The origin and evolution of Life in the universe

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Pubblicazioni

An X-ray spectroscopy study of structural stability of superhydrogenated pyrene derivatives

Autori: Yining Huo, Mónica K Espinoza Cangahuala, Vicente Zamudio-Bayer, Marcelo Goulart, Markus Kubin, Martin Timm, J Tobias Lau, Bernd von Issendorff, Ronnie Hoekstra, Shirin Faraji, Thomas Schlathölter
Pubblicato in: Monthly Notices of the Royal Astronomical Society, Numero 523, 2023, Pagina/e 865-875, ISSN 0035-8711
Editore: Blackwell Publishing Inc.
DOI: 10.1093/mnras/stad1341

Enantioselective Self-Replicators

Autori: Shuo Yang, Yannick Geiger, Marc Geerts, Marcel J. Eleveld, Armin Kiani, Sijbren Otto
Pubblicato in: Journal of the American Chemical Society, Numero 145, 2023, Pagina/e 16889-16898, ISSN 0002-7863
Editore: American Chemical Society
DOI: 10.1021/jacs.3c05472

Impact of ancestral sequence reconstruction on mechanistic and structural enzymology

Autori: Callum R. Nicoll, Marta Massari, Marco W. Fraaije, Maria Laura Mascotti, Andrea Mattevi
Pubblicato in: Current Opinion in Structural Biology, Numero 82, 2024, Pagina/e 102669, ISSN 0959-440X
Editore: Elsevier BV
DOI: 10.1016/j.sbi.2023.102669

Achieving Control in Micro-/Nanomotor Mobility

Autori: Alexander D. Fusi, Yudong Li, Dr. A. Llopis-Lorente, Dr. Tania Patiño, Prof. Dr. Jan C. M. van Hest, Dr. Loai K. E. A. Abdelmohsen
Pubblicato in: Angewandte ChemieBron:Wiley Online Library: Complete Journals, Numero volume 135, issue 5, 2023, ISSN 0044-8249
Editore: John Wiley and Sons,
DOI: 10.1002/ange.202214754

Exploring Intra- and Inter-Regional Interactions in the IDP α-Synuclein Using smFRET and MD Simulations

Autori: Gobert Heesink, Mirjam J. Marseille, Mohammad A. A. Fakhree, Mark D. Driver, Kirsten A. van Leijenhorst-Groener, Patrick R. Onck, Christian Blum, Mireille M.A.E. Claessens
Pubblicato in: Biomacromolecules, Numero 24, 2023, Pagina/e 3680-3688, ISSN 1525-7797
Editore: American Chemical Society
DOI: 10.1021/acs.biomac.3c00404

Temporal segregation of biosynthetic processes is responsible for metabolic oscillations during the budding yeast cell cycle

Autori: Vakil Takhaveev, Serdar Özsezen, Edward N. Smith, Andre Zylstra, Marten L. Chaillet, Haoqi Chen, Alexandros Papagiannakis, Andreas Milias-Argeitis, Matthias Heinemann
Pubblicato in: Nature Metabolism, Numero 5, 2023, Pagina/e 294-313, ISSN 2522-5812
Editore: Springer
DOI: 10.1038/s42255-023-00741-x

Vanillyl alcohol oxidase from Diplodia corticola: Residues Ala420 and Glu466 allow for efficient catalysis of syringyl derivatives

Autori: Daniel Eggerichs, Nils Weindorf, Maria Laura Mascotti, Natalie Welzel, Marco W. Fraaije, Dirk Tischler
Pubblicato in: Journal of Biological Chemistry, Numero 299, 2024, Pagina/e 104898, ISSN 0021-9258
Editore: American Society for Biochemistry and Molecular Biology Inc.
DOI: 10.1016/j.jbc.2023.104898

Asymmetric Synthesis of Chiral‐at‐P Alkenylphosphonamidates through Nickel‐Catalyzed C−P Coupling of Phosphoramidites and Alkenyl Halides

Autori: Xiao‐Bing Chen, Damián Padín, Charlotte N. Stindt, Ben L. Feringa
Pubblicato in: Angewandte Chemie International Edition, Numero 62, 2023, ISSN 1433-7851
Editore: John Wiley & Sons Ltd.
DOI: 10.1002/anie.202307450

Bacterial multi‐solute transporters

Autori: Dirk J. Slotboom, Thijs W. Ettema, Mark Nijland, Chancievan Thangaratnarajah
Pubblicato in: FEBS Letters, Numero 594, 2023, Pagina/e 3898-3907, ISSN 0014-5793
Editore: Elsevier BV
DOI: 10.1002/1873-3468.13912

Author Correction: CRISPR-based transcriptional activation tool for silent genes in filamentous fungi

Autori: László Mózsik, Mirthe Hoekzema, Niels A.W. de Kok, Roel A.L. Bovenberg, Yvonne Nygård, Arnold J.M. Driessen
Pubblicato in: Scientific Reports, Numero vol 11, issue 1, 2021, ISSN 2045-2322
Editore: Nature Publishing Group
DOI: 10.1038/s41598-021-99654-6

Cryo-EM studies of membrane proteins at 200 keV

Autori: Chancievan Thangaratnarajah, Jan Rheinberger, Cristina Paulino
Pubblicato in: Current Opinion in Structural Biology, Numero 76, 2024, Pagina/e 102440, ISSN 0959-440X
Editore: Elsevier BV
DOI: 10.1016/j.sbi.2022.102440

All-Photochemical Rotation of Molecular Motors with a Phosphorus Stereoelement

Autori: Gregory B. Boursalian, Eise R. Nijboer, Ruth Dorel, Lukas Pfeifer, Omer Markovitch, Alex Blokhuis, Ben L. Feringa
Pubblicato in: Journal of the American Chemical Society, Numero 142, 2023, Pagina/e 16868-16876, ISSN 0002-7863
Editore: American Chemical Society
DOI: 10.1021/jacs.0c08249

Role of Curvature‐Sensing Proteins in the Uptake of Nanoparticles with Different Mechanical Properties

Autori: Daphne Montizaan, Catherine Saunders, Keni Yang, Sajitha Sasidharan, Sourav Maity, Catharina Reker‐Smit, Marc C. A. Stuart, Costanza Montis, Debora Berti, Wouter H. Roos, Anna Salvati
Pubblicato in: Small, Numero 19, 2023, ISSN 1613-6810
Editore: Wiley - V C H Verlag GmbbH & Co.
DOI: 10.1002/smll.202303267

Quorum sensing communication between lipid-based artificial cells

Autori: Antoni Llopis-Lorente, Bastiaan C. Buddingh', R. Martínez-Máñez, Jan C. M. van Hest, Loai K. E. Abdelmohsen
Pubblicato in: Chemical Communications, Numero 59, 2024, Pagina/e 579-582, ISSN 1359-7345
Editore: Royal Society of Chemistry
DOI: 10.1039/d2cc05367e

Water content of rocky exoplanets in the habitable zone

Autori: Ádám Boldog, Vera Dobos, László L. Kiss, Marijn van der Perk, Amy C. Barr
Pubblicato in: Astronomy & Astrophysics, Numero 681, 2024, Pagina/e A109, ISSN 0004-6361
Editore: Springer Verlag
DOI: 10.1051/0004-6361/202346988

A comparative laboratory study of soft X-ray-induced ionization and fragmentation of five small PAH cations

Autori: Yining Huo, Mónica K. Espinoza Cangahuala, Vicente Zamudio-Bayer, Marcelo Goulart, Markus Kubin, Martin Timm, J. Tobias Lau, Bernd von Issendorff, Ronnie Hoekstra, Shirin Faraji, Thomas Schlathölter
Pubblicato in: The European Physical Journal D, Numero 77, 2023, ISSN 1434-6060
Editore: Springer Verlag
DOI: 10.1140/epjd/s10053-023-00763-w

Key features of inhibitor binding to the human mitochondrial pyruvate carrier hetero-dimer

Autori: Sotiria Tavoulari, Tom J.J. Schirris, Vasiliki Mavridou, Chancievan Thangaratnarajah, Martin S. King, Daniel T.D. Jones, Shujing Ding, Ian M. Fearnley, Edmund R.S. Kunji
Pubblicato in: Molecular Metabolism, Numero 60, 2022, Pagina/e 101469, ISSN 2212-8778
Editore: Elsevier GmbH
DOI: 10.1016/j.molmet.2022.101469

Lipid-Based Nanoparticle Functionalization with Coiled-Coil Peptides for <i>In Vitro</i> and <i>In Vivo</i> Drug Delivery

Autori: Dennis Aschmann; Renzo A. Knol; Alexander Kros
Pubblicato in: Accounts of Chemical Research, Numero 57, 8,, 2024, Pagina/e 1098–1110, ISSN 0001-4842
Editore: American Chemical Society
DOI: 10.1021/acs.accounts.3c00769

Structural consequences of BMPR2 kinase domain mutations causing pulmonary arterial hypertension

Autori: Apirat Chaikuad, Chancievan Thangaratnarajah, Frank von Delft, Alex N. Bullock
Pubblicato in: Scientific Reports, Numero 9, 2022, ISSN 2045-2322
Editore: Nature Publishing Group
DOI: 10.1038/s41598-019-54830-7

Ancestral-sequence reconstruction unveils the structural basis of function in mammalian FMOs

Autori: Callum R Nicoll, Gautier Bailleul, Filippo Fiorentini, María Laura Mascotti, Marco W Fraaije*, Andrea Mattevi
Pubblicato in: Nature Structural & Molecular Biology, Numero vol 27, 2019, Pagina/e 14-24, ISSN 1545-9985
Editore: Nature Publishing Group
DOI: 10.1038/s41594-019-0347-2

Fitness landscape of substrate-adaptive mutations in evolved amino acid-polyamine-organocation transporters

Autori: Foteini Karapanagioti, Úlfur Águst Atlason, Dirk J Slotboom, Bert Poolman, Sebastian Obermaier
Pubblicato in: eLife, Numero 13, 2024, ISSN 2050-084X
Editore: eLife Sciences Publications
DOI: 10.7554/elife.93971.3

Stoichiometry alone can steer supramolecular systems on complex free energy surfaces with high selectivity

Autori: Dávid Komáromy, Theodora Tiemersma-Wegman, Johan Kemmink, Giuseppe Portale, Paul R. Adamski, Alex Blokhuis, Friso S. Aalbers, Ivana Marić, Guillermo Monreal Santiago, Jim Ottelé, Ankush Sood, Vittorio Saggiomo, Bin Liu, Pieter van der Meulen, Sijbren Otto
Pubblicato in: Chem, Numero 7, 2023, Pagina/e 1933-1951, ISSN 2451-9294
Editore: Elsevier
DOI: 10.1016/j.chempr.2021.05.020

CRISPR-based transcriptional activation tool for silent genes in filamentous fungi

Autori: László Mózsik, Mirthe Hoekzema, Niels A W de Kok, Roel A L Bovenberg, Yvonne Nygård, Arnold J M Driessen
Pubblicato in: Scientific Reports, Numero vol 11, issue 1, 2021, Pagina/e 13 pages, ISSN 2045-2322
Editore: Nature Publishing Group
DOI: 10.1038/s41598-020-80864-3

Natamycin sequesters ergosterol and interferes with substrate transport by the lysine transporter Lyp1 from yeast

Autori: Maria Szomek, Peter Reinholdt, Hanna-Loisa Walther, Holger A. Scheidt, Peter Müller, Sebastian Obermaier, Bert Poolman, Jacob Kongsted, Daniel Wüstner
Pubblicato in: Biochimica et Biophysica Acta (BBA) - Biomembranes, Numero 1864, 2024, Pagina/e 184012, ISSN 0005-2736
Editore: Elsevier BV
DOI: 10.1016/j.bbamem.2022.184012

Bidirectional ATP-driven transport of cobalamin by the mycobacterial ABC transporter BacA

Autori: Mark Nijland; Solène N. Lefebvre; Chancievan Thangaratnarajah; Dirk J. Slotboom
Pubblicato in: Nature Communications, Numero 15 / 1, 2024, Pagina/e 9 pages, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-024-46917-1

Reconstructing the evolutionary history of F420-dependent dehydrogenases

Autori: M. Laura Mascotti, Hemant Kumar, Quoc-Thai Nguyen, Maximiliano Juri Ayub, Marco W. Fraaije
Pubblicato in: Scientific Reports, Numero 8, 2022, ISSN 2045-2322
Editore: Nature Publishing Group
DOI: 10.1038/s41598-018-35590-2

Investigating the biochemical signatures and physiological roles of the FMO family using molecular phylogeny

Autori: C.R. Nicoll, M.L. Mascotti
Pubblicato in: BBA Advances, Numero 4, 2023, Pagina/e 100108, ISSN 2667-1603
Editore: Elsevier
DOI: 10.1016/j.bbadva.2023.100108

One Soai reaction, two mechanisms?

Autori: Yannick Geiger
Pubblicato in: Chemical Society Reviews, Numero 14604744, 2022, ISSN 1460-4744
Editore: Royal Society of Chemistry
DOI: 10.1039/d1cs01038g

Endocytosis-like DNA uptake by cell wall-deficient bacteria

Autori: Renée Kapteijn, Shraddha Shitut, Dennis Aschmann, Le Zhang, Marit de Beer, Deniz Daviran, Rona Roverts, Anat Akiva, Gilles P. van Wezel, Alexander Kros, Dennis Claessen
Pubblicato in: Nature Communications, Numero 13, 2022, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-022-33054-w

The topological shadow of $${{{\mathbb {F}}}_1}$$-geometry: congruence spaces

Autori: Oliver Lorscheid, Samarpita Ray
Pubblicato in: Mathematische Zeitschrift, Numero 306, 2024, ISSN 0025-5874
Editore: Springer Verlag
DOI: 10.1007/s00209-023-03425-0

Hybrid Biodegradable Nanomotors through Compartmentalized Synthesis

Autori: Imke AB Pijpers, Shoupeng Cao, Antoni Llopis-Lorente, Jianzhi Zhu, Shidong Song, Rick RM Joosten, Fenghua Meng, Heiner Friedrich, David S Williams, Samuel Sánchez, Jan CM van Hest, Loai KEA Abdelmohsen
Pubblicato in: Nano Letters, Numero issue 20 / 6, 2020, Pagina/e 4472-4480
Editore: American Chemical Society
DOI: 10.1021/acs.nanolett.0c01268

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