System omics to unravel the gut-kidney axis in Chronic Kidney Disease.

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Publicaciones

Microbiome in Chronic Kidney Disease (CKD): An Omics Perspective

Autores: Sonnal Lohia, Antonia Vlahou, Jerome Zoidakis
Publicado en: Toxins, 2022, ISSN 2072-6651
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/toxins14030176

Integration of Urinary Peptidome and Fecal Microbiome to Explore Patient Clustering in Chronic Kidney Disease

Autores: Mavrogeorgis E, Valkenburg S, Siwy J, Latosinska A, Glorieux G, Mischak H, Jankowski J
Publicado en: Proteomes, 2024, ISSN 2227-7382
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/proteomes12020011

Food-Derived Uremic Toxins in Chronic Kidney Disease

Autores: Mara Lauriola; Ricard Farré; Pieter Evenepoel; Saskia Adriana Overbeek; Björn Meijers
Publicado en: Toxins, 2023, ISSN 2072-6651
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/toxins15020116

Glycosylation Analysis of Urinary Peptidome Highlights IGF2 Glycopeptides in Association with CKD

Autores: Sonnal Lohia; Agnieszka Latosinska; Jerome Zoidakis; Manousos Makridakis; Harald Mischak; Griet Glorieux; Antonia Vlahou; Vera Jankowski
Publicado en: International Journal of Molecular Sciences, 2023, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms24065402

Gut–Kidney Axis Investigations in Animal Models of Chronic Kidney Disease

Autores: Piotr Bartochowski; Nathalie Gayrard; Stéphanie Bornes; Céline Druart; Angel Argilés; Magali Cordaillat-Simmons; Flore Duranton
Publicado en: Toxins, 2022, ISSN 2072-6651
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/toxins14090626

Alterations of the peptidomic composition of peripheral plasma after portal hypertension correction by transjugular intrahepatic portosystemic shunt

Autores: Giulia Ilaria Bagarolo, Shruti Bhargava, Robert Schierwagen, Wenyi Gu, Vera Jankowski, Josefin Soppert, Emona Barzakova, Federica Cascone, Olaf Tyc, Christiane Kuhl, Heidi Noels, Jonel Trebicka, Joachim Jankowski
Publicado en: npj Gut and Liver, Edición 1, 2024, ISSN 3004-9806
Editor: Springer Nature
DOI: 10.1038/s44355-024-00001-z

Impact of Uremic Toxins on Endothelial Dysfunction in Chronic Kidney Disease: A Systematic Review

Autores: Harlacher, Eva, Julia Wollenhaupt, Constance C. F. M. J. Baaten, and Heidi Noels
Publicado en: International Journal of Molecular Sciences, 2022, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms23010531

Investigation of the human-gut-kidney axis by fecal proteomics, highlights molecular mechanisms affected in CKD

Autores: Lohia S, Valkenburg S, Stroggilos R, Lygirou V, Makridakis M, Zoidakis J, Verbeke F, Glorieux G, Vlahou A
Publicado en: Heliyon, 2024, ISSN 2405-8440
Editor: Cell Press
DOI: 10.1016/j.heliyon.2024.e32828

Urinary peptide analysis to predict the response to blood pressure medication

Autores: Mayra Alejandra Jaimes Campos; Emmanouil Mavrogeorgis; Agnieszka Latosinska; Susanne Eder; Lukas Buchwinkler; Harald Mischak; Justyna Siwy; Peter Rossing; Gert Mayer; Joachim Jankowski
Publicado en: Nephrology Dialysis Transplantation, 2024, ISSN 0931-0509
Editor: Oxford University Press
DOI: 10.1093/ndt/gfad223

Probiotics for kidney disease

Autores: Chiara Favero, Alberto Ortiz, Maria D Sanchez-Niño
Publicado en: Clinical Kidney Journal, 2022, ISSN 2048-8505
Editor: Oxford University Press
DOI: 10.1093/ckj/sfac056

Gene Expression Monotonicity across Bladder Cancer Stages Informs on the Molecular Pathogenesis and Identifies a Prognostic Eight-Gene Signature

Autores: Rafael Stroggilos; Maria Frantzi; Jerome Zoidakis; Marika Mokou; Napoleon Moulavasilis; Emmanouil Mavrogeorgis; Anna Melidi; Manousos Makridakis; Konstantinos Stravodimos; Maria G. Roubelakis; Harald Mischak; Antonia Vlahou
Publicado en: Cancers, 2022, ISSN 2072-6694
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers14102542

Uremic Toxin Lanthionine Induces Endothelial Cell Mineralization In Vitro

Autores: Annapaola Coppola, Carmela Vigorito, Patrizia Lombari, Yuselys García Martínez, Margherita Borriello, Francesco Trepiccione, Diego Ingrosso, Alessandra F. Perna
Publicado en: Biomedicines, 2022, ISSN 2227-9059
Editor: MDPI
DOI: 10.3390/biomedicines10020444

Multiple urinary peptides display distinct sex-specific distribution

Autores: Mina IK, Mavrogeorgis E, Siwy J, Stojanov R, Mischak H, Latosinska A, Jankowski V
Publicado en: Proteomics, 2024, ISSN 1613-6810
Editor: Wiley - V C H Verlag GmbbH & Co.
DOI: 10.1002/pmic.202300227

Exploratory Study Analyzing the Urinary Peptidome of T2DM Patients Suggests Changes in ECM but Also Inflammatory and Metabolic Pathways Following GLP-1R Agonist Treatment

Autores: Sonnal Lohia; Justyna Siwy; Emmanouil Mavrogeorgis; Susanne Eder; Stefanie Thöni; Gert Mayer; Harald Mischak; Antonia Vlahou; Vera Jankowski
Publicado en: International Journal of Molecular Sciences, 2023, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms241713540

The Gut Microbiota in Kidney Transplantation: A Target for Personalized Therapy?

Autores: García-Martínez, Yuselys; Borriello, Margherita; Capolongo, Giovanna; Ingrosso, Diego; Perna, Alessandra
Publicado en: Biology, 2023, ISSN 2079-7737
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/biology12020163

Gut-Derived Metabolites and Their Role in Immune Dysfunction in Chronic Kidney Disease.

Autores: Griet Glorieux; Tessa Gryp; Alessandra F. Perna
Publicado en: Toxins, Edición 1, 2020, ISSN 2072-6651
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/toxins12040245

Microbial-Derived Tryptophan Catabolites, Kidney Disease and Gut Inflammation

Autores: Madella, Avra Melina, Jeroen Van Bergenhenegouwen, Johan Garssen, Rosalinde Masereeuw, and Saskia Adriana Overbeek
Publicado en: Toxins, 2022, ISSN 2072-6651
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/toxins14090645

Microphysiological Systems to Recapitulate the Gut–Kidney Axis

Autores: Laura Giordano, Silvia Maria Mihaila, Hossein Eslami Amirabadi, Rosalinde Masereeuw
Publicado en: Trends in Biotechnology, 2021, ISSN 0167-7799
Editor: Elsevier BV
DOI: 10.1016/j.tibtech.2020.12.001

Integrating single-cell multi-omics and prior biological knowledge for a functional characterization of the immune system

Autores: Schäfer, Philipp Sven Lars; Dimitrov, Daniel; Villablanca, Eduardo; Saez-Rodriguez, Julio
Publicado en: Nat Immunol, 2023, ISSN 1529-2908
Editor: Nature Publishing Group
DOI: 10.1038/s41590-024-01768-2

Postbiotics and Kidney Disease

Autores: Favero, Chiara; Giordano, Laura; Mihaila, Silvia Maria; Masereeuw, Rosalinde; Ortiz, Alberto; Sanchez-Niño, Maria Dolores; Afd Pharmacology; Pharmacology
Publicado en: Toxins, 2022, ISSN 2072-6651
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/toxins14090623

Homeostasis in the Gut Microbiota in Chronic Kidney Disease

Autores: Shruti Bhargava; Erik Merckelbach; Heidi Noels; Ashima Vohra; Joachim Jankowski
Publicado en: Toxins, 2022, ISSN 2072-6651
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/toxins14100648

Reproducibility Evaluation of Urinary Peptide Detection Using CE-MS

Autores: Emmanouil Mavrogeorgis; Harald Mischak; Agnieszka Latosinska; Justyna Siwy; Vera Jankowski; Joachim Jankowski
Publicado en: Molecules, Edición 2, 2021, ISSN 1420-3049
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/molecules26237260

Combining LIANA and Tensor-cell2cell to decipher cell-cell communication across multiple samples

Autores: Hratch Baghdassarian; Daniel Dimitrov; Erick Armingol; Julio Saez-Rodriguez; Nathan E. Lewis
Publicado en: Cell Rep Methods, 2024, ISSN 2667-2375
Editor: Elsevier BV
DOI: 10.1016/j.crmeth.2024.100758

Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data

Autores: Daniel Dimitrov; Dénes Türei; Martin Garrido-Rodriguez; Paul L. Burmedi; James S. Nagai; Charlotte Boys; Ricardo O. Ramirez Flores; Hyojin Kim; Bence Szalai; Ivan G. Costa; Alberto Valdeolivas; Aurélien Dugourd; Julio Saez-Rodriguez
Publicado en: Nature Communications, 2022, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-022-30755-0

Multicellular factor analysis of single-cell data for a tissue-centric understanding of disease

Autores: Ricardo O. Ramirez Flores; Jan D. Lanzer; Daniel Dimitrov; Britta Velten; Julio Saez-Rodriguez
Publicado en: eLife, 2023, ISSN 2050-084X
Editor: eLife Sciences Publications
DOI: 10.7554/elife.93161

Gut Microbiota and Their Derived Metabolites, a Search for Potential Targets to Limit Accumulation of Protein-Bound Uremic Toxins in Chronic Kidney Disease

Autores: Mieke Steenbeke, Sophie Valkenburg, Tessa Gryp, Wim Van Biesen, Joris R. Delanghe, Marijn M. Speeckaert, Griet Glorieux
Publicado en: Toxins, 2021, ISSN 2072-6651
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/toxins13110809

Urinary peptidomic liquid biopsy for non-invasive differential diagnosis of chronic kidney disease

Autores: Emmanouil Mavrogeorgis; Tianlin He; Harald Mischak; Agnieszka Latosinska; Antonia Vlahou; Joost P Schanstra; Lorenzo Catanese; Kerstin Amann; Tobias B Huber; Joachim Beige; Harald D Rupprecht; Justyna Siwy
Publicado en: Nephrology Dialysis Transplantation, 2024, ISSN 0931-0509
Editor: Oxford University Press
DOI: 10.1093/ndt/gfad200

Phosphate, Microbiota and CKD

Autores: Chiara Favero; Sol Carriazo; Leticia Cuarental; Raul Fernandez-Prado; Elena Gomá-Garcés; Maria Vanessa Perez-Gomez; Alberto Ortiz; Beatriz Fernandez-Fernandez; Maria Dolores Sanchez-Niño
Publicado en: Nutrients, Edición 2, 2021, ISSN 2072-6643
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/nu13041273

decoupleR: ensemble of computational methods to infer biological activities from omics data

Autores: Pau Badia-i-Mompel, Jesús Vélez Santiago, Jana Braunger, Celina Geiss, Daniel Dimitrov, Sophia Müller-Dott, Petr Taus, Aurelien Dugourd, Christian H Holland, Ricardo O Ramirez Flores, Julio Saez-Rodriguez
Publicado en: Bioinformatics Advances, 2022, ISSN 2635-0041
Editor: Oxford University Press
DOI: 10.1093/bioadv/vbac016

Blood Endotoxin Levels as Biomarker of Nonalcoholic Fatty Liver Disease: A Systematic Review and Meta-analysis

Autores: Josefin Soppert, Elisa Fabiana Brandt, Nicole Maria Heussen, Emona Barzakova, Lars Mathias Blank, Lars Kuepfer, Mathias Walter Hornef, Jonel Trebicka, Joachim Jankowski, Marie-Luise Berres, Heidi Noels
Publicado en: Clinical Gastroenterology and Hepatology, Edición 21, 2023, Página(s) 2746-2758, ISSN 1542-3565
Editor: W. B. Saunders Co., Ltd.
DOI: 10.1016/j.cgh.2022.11.030

How will artificial intelligence and bioinformatics change our understanding of IgA Nephropathy in the next decade

Autores: Roman D. Bülow; Daniel Dimitrov; Peter Boor; Julio Saez-Rodriguez
Publicado en: Seminars in Immunopathology, Edición 1, 2021, ISSN 1863-2300
Editor: Springer
DOI: 10.1007/s00281-021-00847-y

Butyrate promotes kidney resilience through a coordinated kidney protective response in tubular cells

Autores: Favero C, Pintor-Chocano A, Sanz A, Ortiz A, Sanchez-Niño MD
Publicado en: Biochemical Pharmacology, 2024, ISSN 0006-2952
Editor: Elsevier BV
DOI: 10.1016/j.bcp.2024.116203

Prognosis and Personalized In Silico Prediction of Treatment Efficacy in Cardiovascular and Chronic Kidney Disease: A Proof-of-Concept Study

Autores: Jaimes Campos MA, Andújar I, Keller F, Mayer G, Rossing P, Staessen JA, Delles C, Beige J, Glorieux G, Clark AL, et al.
Publicado en: Pharmaceuticals, 2023, ISSN 1424-8247
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ph16091298

Urine Peptidome Analysis Identifies Common and Stage-Specific Markers in Early Versus Advanced CKD

Autores: Sam Hobson; Emmanouil Mavrogeorgis; Tianlin He; Justyna Siwy; Thomas Ebert; Karolina Kublickiene; Peter Stenvinkel; Harald Mischak
Publicado en: Proteomes, 2023, ISSN 2227-7382
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/proteomes11030025

Uremic Toxins and Cardiovascular System

Autores: Sophie Valkenburg, Griet Glorieux, Raymond Vanholder
Publicado en: Cardiology Clinics, 2021, ISSN 0733-8651
Editor: W. B. Saunders Co., Ltd.
DOI: 10.1016/j.ccl.2021.04.002

Collagen-Derived Peptides in CKD: A Link to Fibrosis

Autores: Emmanouil Mavrogeorgis; Harald Mischak; Agnieszka Latosinska; Antonia Vlahou; Joost P. Schanstra; Justyna Siwy; Vera Jankowski; Joachim Beige; Joachim Jankowski
Publicado en: Toxins; Volume 14; Edición 1; Pages: 10, Edición 2, 2021, ISSN 2072-6651
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/toxins14010010

What If Not All Metabolites from the Uremic Toxin Generating Pathways Are Toxic? A Hypothesis

Autores: Raymond Vanholder; Sanjay K. Nigam; Stéphane Burtey; Griet Glorieux
Publicado en: Toxins, 2022, ISSN 2072-6651
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/toxins14030221

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