SCIENTIA-FELLOWS II: International Postdoctoral Fellowship Programme

Risultati finali

3rd call: communication link to Euraxess

Information to the Project Officer about the call publication and a screenshot of call announcement

1st call: communication link to Euroaxess

Information to the Project Officer about the call publication and a screenshot of call announcement

2nd call: communication link to Euroaxess

Information to the Project Officer about the call publication and a screenshot of call announcement

Pubblicazioni

Colorimetric and Electrochemical Screening for Early Detection of Diabetes Mellitus and Diabetic Retinopathy—Application of Sensor Arrays and Machine Learning

Autori: Georgina Faura; Gerard Boix-Lemonche; Anne Kristin Holmeide; Rasa Verkauskiene; Vallo Volke; Jelizaveta Sokolovska; Goran Petrovski
Pubblicato in: Sensors, Numero Vol 22, Iss 718, p 718, 2022, ISSN 1424-8220
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/s22030718

Divalent ligand-monovalent molecule binding.

Autori: Mathijs Janssen; Harald Stenmark; Andreas Carlson
Pubblicato in: Soft Matter, 2021, ISSN 1744-683X
Editore: Royal Society of Chemistry
DOI: 10.1039/d1sm00070e

Genetic Association Between Schizophrenia and Cortical Brain Surface Area and Thickness

Autori: Weiqiu Cheng, Oleksandr Frei, Dennis van der Meer, Yunpeng Wang, Kevin S. O’Connell, Yunhan Chu, Shahram Bahrami, Alexey A. Shadrin, Dag Alnæs, Guy F. L. Hindley, Aihua Lin, Naz Karadag, Chun-Chieh Fan, Lars T. Westlye, Tobias Kaufmann, Espen Molden, Anders M. Dale, Srdjan Djurovic, Olav B. Smeland, Ole A. Andreassen
Pubblicato in: JAMA Psychiatry, Numero 78/9, 2021, Pagina/e 1020, ISSN 2168-622X
Editore: American Medical Association
DOI: 10.1001/jamapsychiatry.2021.1435

Intracorneal Implantation of 3D Bioprinted Scaffolds Containing Mesenchymal Stromal Cells Using Femtosecond‐Laser‐Assisted Intrastromal Keratoplasty

Autori: Gerard Boix‐Lemonche; Richard M. Nagymihaly; Essi M. Niemi; Natasha Josifovska; Stian Johansen; Morten C. Moe; Hanne Scholz; Goran Petrovski
Pubblicato in: Macromolecular Bioscience, 2023, ISSN 1616-5195
Editore: Wiley-VCH GmbH
DOI: 10.1002/mabi.202200422

The human lens is capable of trilineage differentiation towards osteo-, chondro-, and adipogenesis—a model for studying cataract pathogenesis

Autori: Boix-Lemonche, Gerard; Nagymihaly, Richard M.; Lumi, Xhevat; Petrovski, Goran
Pubblicato in: Frontiers in Bioengineering and Biotechnology, 2023, ISSN 2296-4185
Editore: Frontiers Media S.A.
DOI: 10.3389/fbioe.2023.1164795

Determination of CAR T cell metabolism in an optimized protocol

Autori: Sandy Joaquina; Christopher Forcados; Benjamin Caulier; Benjamin Caulier; Benjamin Caulier; Else Marit Inderberg; Sébastien Wälchli
Pubblicato in: Frontiers in Bioengineering and Biotechnology, Vol 11 (2023), Numero 2, 2023, ISSN 2296-4185
Editore: Frontiers Media SA
DOI: 10.3389/fbioe.2023.1207576

Thermoplastic Elastomer (TPE)–Poly(Methyl Methacrylate) (PMMA) Hybrid Devices for Active Pumping PDMS-Free Organ-on-a-Chip Systems

Autori: Mathias Busek, Steffen Nøvik, Aleksandra Aizenshtadt, Mikel Amirola-Martinez, Thomas Combriat, Stefan Grünzner, Stefan Krauss
Pubblicato in: Biosensors, Numero 11/5, 2021, Pagina/e 162, ISSN 2079-6374
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/bios11050162

Pump-less, recirculating organ-on-a-chip (rOoC) platform

Autori: M. Busek; A. Aizenshtadt; T. Koch; A. Frank; L. Delon; M. Amirola Martinez; A. Golovin; C. Dumas; J. Stokowiec; S. Gruenzner; E. Melum; S. Krauss
Pubblicato in: Lab on a Chip, 2023, ISSN 1473-0197
Editore: Royal Society of Chemistry
DOI: 10.1039/d2lc00919f

Evolutionary and functional history of the Escherichia coli K1 capsule

Autori: Sergio Arredondo-Alonso, George Blundell-Hunter, Zuyi Fu, Rebecca A. Gladstone, Alfred Fillol-Salom, Jessica Loraine, Elaine Cloutman-Green, Pål J. Johnsen, Ørjan Samuelsen, Anna K. Pöntinen, François Cléon, Susana Chavez-Bueno, Miguel A. De la Cruz, Miguel A. Ares, Manivanh Vongsouvath, Agnieszka Chmielarczyk, Carolyne Horner, Nigel Klein, Alan McNally, Joice N. Reis, José R. Penadés, Nich
Pubblicato in: nature communications, 2023, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-023-39052-w

GAK and PRKCD are positive regulators of PRKN-independent mitophagy

Autori: Michael J. Munson, Benan J. Mathai, Matthew Yoke Wui Ng, Laura Trachsel-Moncho, Laura R. de la Ballina, Sebastian W. Schultz, Yahyah Aman, Alf H. Lystad, Sakshi Singh, Sachin Singh, Jørgen Wesche, Evandro F. Fang, Anne Simonsen
Pubblicato in: Nature Communications, Numero 12/1, 2021, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-021-26331-7

Estimating the Logarithm of Characteristic Function and Stability Parameter for Symmetric Stable Laws

Autori: Jüri Lember; Annika Krutto
Pubblicato in: Methodology and Computing in Applied Probability, 2021, ISSN 1387-5841
Editore: Kluwer Academic Publishers
DOI: 10.1007/s11009-021-09908-z

Pharmacologic Control of CAR T Cells.

Autori: Benjamin Caulier; Jorrit M. Enserink; Sébastien Wälchli
Pubblicato in: International Journal of Molecular Sciences, 2021, ISSN 1422-0067
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms22094320

Robust monolithic solvers for the Stokes-Darcy problem with the Darcy equation in primal form

Autori: Wietse M. Boon; Timo Koch; Miroslav Kuchta; Kent-André Mardal
Pubblicato in: SIAM Journal on Scientific Computing, 2022, ISSN 1064-8275
Editore: Society for Industrial and Applied Mathematics
DOI: 10.1137/21m1452974

Mge-cluster: a reference-free approach for typing bacterial plasmids

Autori: Sergio Arredondo-Alonso, Rebecca A Gladstone, Anna K Pöntinen, João A Gama, Anita C Schürch, Val F Lanza, Pål Jarle Johnsen, Ørjan Samuelsen, Gerry Tonkin-Hill, Jukka Corander
Pubblicato in: NAR Genomics and Bioinformatics, 2023, ISSN 2631-9268
Editore: Oxford University Press
DOI: 10.1093/nargab/lqad066

Recovering Escherichia coli Plasmids in the Absence of Long-Read Sequencing Data

Autori: Julian A. Paganini, Nienke L. Plantinga, Sergio Arredondo-Alonso, Rob J. L. Willems, Anita C. Schürch
Pubblicato in: Microorganisms, Numero 9/8, 2021, Pagina/e 1613, ISSN 2076-2607
Editore: MDPI
DOI: 10.3390/microorganisms9081613

Mixed fatty acid-phospholipid protocell networks.

Autori: Inga Põldsalu; Elif Senem Köksal; Irep Gözen
Pubblicato in: Physical Chemistry Chemical Physics, 2021, ISSN 1463-9076
Editore: Royal Society of Chemistry
DOI: 10.1039/d1cp03832j

Lithium increases mitochondrial respiration in iPSC-derived neural precursor cells from lithium responders

Autori: Jordi Requena Osete, Ibrahim A. Akkouh, Denis Reis de Assis, Attila Szabo, Evgeniia Frei, Timothy Hughes, Olav B. Smeland, Nils Eiel Steen, Ole A. Andreassen, Srdjan Djurovic
Pubblicato in: Molecular Psychiatry, 2021, ISSN 1359-4184
Editore: Nature Publishing Group
DOI: 10.1038/s41380-021-01164-4

A (Dual) Network Model for Heat Transfer in Porous Media

Autori: Timo Koch, Kilian Weishaupt, Johannes Müller, Bernhard Weigand, Rainer Helmig
Pubblicato in: Transport in Porous Media, Numero 140/1, 2021, Pagina/e 107-141, ISSN 0169-3913
Editore: Kluwer Academic Publishers
DOI: 10.1007/s11242-021-01602-5

A high-throughput multiplexing and selection strategy to complete bacterial genomes

Autori: Alonso, Sergio Arredondo; Pöntinen, Anna K.; Cleon, Francois Pierre Alexandre; Gladstone, Rebecca Ashley; Schürch, Anita C.; Johnsen, Pål Jarle; Samuelsen, Ørjan; Corander, Jukka
Pubblicato in: GigaScience, 2021, ISSN 2047-217X
Editore: Oxford University Press
DOI: 10.1093/gigascience/giab079

Nonlinear mixed-dimension model for embedded tubular networks with application to root water uptake

Autori: Timo Koch; Hanchuan Wu; Martin Schneider
Pubblicato in: Journal of Computational Physics, 2022, ISSN 0021-9991
Editore: Academic Press
DOI: 10.1016/j.jcp.2021.110823

Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe

Autori: Gerry Tonkin-Hill; Rebecca A Gladstone; Anna K Pöntinen; Sergio Arredondo-Alonso; Stephen D Bentley; Jukka Corander
Pubblicato in: Genome Research, 2023, ISSN 1088-9051
Editore: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gr.277340.122

Mutational analysis and protein profiling predict drug sensitivity in multiple myeloma cell lines

Autori: Mariaserena Giliberto; Leonardo Miranda Santana; Toril Holien; Kristine Misund; Sigve Nakken; Daniel Vodak; Eivind Hovig; Leonardo A. Meza-Zepeda; Eivind Coward; Anders Waage; Kjetil Taskén; Sigrid S. Skånland
Pubblicato in: Frontiers in Oncology, 2022, ISSN 2234-943X
Editore: Frontiers Media S. A.
DOI: 10.3389/fonc.2022.1040730

Shared genetic architecture between schizophrenia and subcortical brain volumes implicates early neurodevelopmental processes and brain development in childhood

Autori: Cheng, Weiqiu; van der Meer, Dennis; Parker, Nadine; Hindley, Guy Frederick Lanyon; O'Connell, Kevin Sean; Wang, Yunpeng; Shadrin, Alexey; Alnæs, Dag; Bahrami, Shahram; Lin, Aihua; Karadag, Naz; Holen, Børge; Fernández-Cabello, Sara; Fan, Chun-Chieh; Dale, Anders; Djurovic, Srdjan; Westlye, Lars Tjelta; Frei, Oleksandr; Smeland, Olav Bjerkehagen; Andreassen, Ole
Pubblicato in: molecular psychiatry, 2022, ISSN 1359-4184
Editore: Nature Publishing Group
DOI: 10.1038/s41380-022-01751-z

Charting the Landscape of Genetic Overlap Between Mental Disorders and Related Traits Beyond Genetic Correlation

Autori: Guy Hindley, Oleksandr Frei, Alexey A Shadrin, Weiqiu Cheng, Kevin S O'Connell, Romain Icick, Nadine Parker, Shahram Bahrami, Naz Karadag, Daniel Roelfs, Børge Holen, Aihua Lin, Chun C Fan, Srdjan Djurovic, Anders M Dale, Olav B Smeland, Ole A Andreassen
Pubblicato in: American Journal of Psychiatry, 2022, ISSN 0002-953X
Editore: American Psychiatric Publishing, Inc.
DOI: 10.1176/appi.ajp.21101051

Reversible heat production during electric double layer buildup depends sensitively on the electrolyte and its reservoir

Autori: Fabian Glatzel, Mathijs Janssen, Andreas Härtel
Pubblicato in: The Journal of Chemical Physics, Numero 154/6, 2021, Pagina/e 064901, ISSN 0021-9606
Editore: American Institute of Physics
DOI: 10.1063/5.0037218

Bacterial Toxin-Triggered Release of Antibiotics from Capsosomes Protects a Fly Model from Lethal Methicillin-Resistant Staphylococcus aureus (MRSA) Infection

Autori: Renée L. Tonkin, Anna Klöckner, Adrian Najer, Carolina J. Simoes da Silva, Cécile Echalier, Marc S. Dionne, Andrew M. Edwards, Molly M. Stevens
Pubblicato in: Advanced Healthcare Materials, 2022, ISSN 2192-2659
Editore: World Scientific
DOI: 10.1002/adhm.202200036

Seizing the moment: Zebrafish epilepsy models

Autori: Kinga Gawel, Melanie Langlois, Teresa Martins, Wietske van der Ent, Ettore Tiraboschi, Maxime Jacmin, Alexander D. Crawford, Camila V. Esguerra
Pubblicato in: Neuroscience & Biobehavioral Reviews, Numero 116, 2020, Pagina/e 1-20, ISSN 0149-7634
Editore: Pergamon Press Ltd.
DOI: 10.1016/j.neubiorev.2020.06.010

Retinal Pigment Epithelium Cell Development: Extrapolating Basic Biology to Stem Cell Research

Autori: Santosh Gupta; Lyubomyr Lytvynchuk; Taras Ardan; Hana Studenovska; Georgina Faura; Lars Eide; Ljubo Znaor; Slaven Erceg; Knut Stieger; Jan Motlik; Kapil Bharti; Goran Petrovski
Pubblicato in: Biomedicines, Vol 11, Iss 2, p 310 (2023), Numero 1, 2023, ISSN 2227-9059
Editore: MDPI
DOI: 10.3390/biomedicines11020310

Spontaneous Formation of Prebiotic Compartment Colonies on Hadean Earth and Pre-Noachian Mars

Autori: Köksal, Elif; Põldsalu, Inga; Friis, Henrik; Mojzsis, Stephen J; Bizzarro, Martin; Gözen, Irep
Pubblicato in: chemsystemschem, 2022, ISSN 2570-4206
Editore: Wiley-VCH GmbH
DOI: 10.1002/syst.202200012

Quantitative analysis of neuronal mitochondrial movement reveals patterns resulting from neurotoxicity of rotenone and 6-hydroxydopamine

Autori: Rui F. Simões; Rute Pino; Maurício Moreira-Soares; Jaromira Kovarova; Jiri Neuzil; Jiri Neuzil; Rui D. M. Travasso; Paulo J. Oliveira; Teresa Cunha-Oliveira; Francisco B. Pereira
Pubblicato in: The FASEB Journal, 2021, ISSN 0892-6638
Editore: Federation of American Societies for Experimental Biology
DOI: 10.1096/fj.202100899r

Transmission Line Circuit and Equation for an Electrolyte-Filled Pore of Finite Length

Autori: Mathijs Janssen
Pubblicato in: PHYSICAL REVIEW LETTERS, 2021, ISSN 0031-9007
Editore: American Physical Society
DOI: 10.1103/physrevlett.126.136002

Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era

Autori: Anna K. Pöntinen, Janetta Top, Sergio Arredondo-Alonso, Gerry Tonkin-Hill, Ana R. Freitas, Carla Novais, Rebecca A. Gladstone, Maiju Pesonen, Rodrigo Meneses, Henri Pesonen, John A. Lees, Dorota Jamrozy, Stephen D. Bentley, Val F. Lanza, Carmen Torres, Luisa Peixe, Teresa M. Coque, Julian Parkhill, Anita C. Schürch, Rob J. L. Willems, Jukka Corander
Pubblicato in: Nature Communications, Numero 12/1, 2021, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-021-21749-5

Cryo-EM structure of Helicobacter pylori urease with an inhibitor in the active site at 2.0 Å resolution

Autori: Eva S. Cunha, Xiaorui Chen, Marta Sanz-Gaitero, Deryck J. Mills, Hartmut Luecke
Pubblicato in: Nature Communications, Numero 12/1, 2021, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-020-20485-6

Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections in Norway in 2002–17: a nationwide, longitudinal, microbial population genomic study

Autori: Gladstone, Rebecca Ashley; McNally, Alan; Pöntinen, Anna Kaarina; Tonkin-Hill, Gerry; Lees, John A.; Skytén, Kusti Onni; Cléon, Francois Pierre Alexandre; Christensen, Martin Owczarek Korsner; Haldorsen, Bjørg; Bye, Kristina K.; Gammelsrud, Karianne Wiger; Hjetland, Reidar; Kümmel, Angela; Larsen, Hege; Lindemann, Paul Christoffer; Löhr, Iren Høyland; Marvik, Åshild; Nilsen, Einar; Noer, M
Pubblicato in: The Lancet Microbe, 2021, ISSN 2666-5247
Editore: Elsevier Ltd.
DOI: 10.1016/s2666-5247(21)00031-8

Regulatory Network of PD1 Signaling Is Associated with Prognosis in Glioblastoma Multiforme

Autori: Camila M. Lopes-Ramos; Tatiana Belova; Tess H. Brunner; Marouen Ben Guebila; Daniel Osorio; John Quackenbush; Marieke L. Kuijjer; Marieke L. Kuijjer
Pubblicato in: Cancer Research, 2021, ISSN 0008-5472
Editore: American Association for Cancer Research
DOI: 10.1158/0008-5472.can-21-0730

Using iPSC Models to Understand the Role of Estrogen in Neuron-Glia Interactions in Schizophrenia and Bipolar Disorder.

Autori: Denis Reis de Assis; Attila Szabo; Jordi Requena Osete; Francesca Puppo; Kevin S. O’Connell; Ibrahim A. Akkouh; Timothy P. Hughes; Evgeniia Frei; Ole A. Andreassen; Srdjan Djurovic
Pubblicato in: 10, Numero 1, 2021, ISSN 2073-4409
Editore: MDPI
DOI: 10.3390/cells10020209

Academic User View: Organ-on-a-Chip Technology

Autori: Mathias Busek; Aleksandra Aizenshtadt; Mikel Amirola-Martinez; Ludivine Delon; Stefan Krauss
Pubblicato in: biosensors, 2022, ISSN 2079-6374
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/bios12020126

Estimates for the astrocyte endfoot sheath permeability of the extra-cellular pathway

Autori: Timo Koch; Vegard Vinje; Kent-André Mardal
Pubblicato in: Fluids and Barriers of the CNS, 2023, ISSN 2045-8118
Editore: BioMed Central
DOI: 10.1186/s12987-023-00421-8

Dynamic density functional theory for the charging of electric double layer capacitors

Autori: Ma, Ke Janssen, Mathijs Adriaan Lian, Cheng Van Roij, René
Pubblicato in: Journal of Chemical Physics, 2022, ISSN 0021-9606
Editore: American Institute of Physics
DOI: 10.1063/5.0081827

Protocells: Milestones and Recent Advances

Autori: Irep Gözen; Elif Senem Köksal; Inga Põldsalu; Lin Xue; Karolina Spustova; Esteban Pedrueza‐Villalmanzo; Ruslan Ryskulov; Fanda Meng; Aldo Jesorka
Pubblicato in: Small, 2022, ISSN 1613-6829
Editore: Wiley-VCH GmbH
DOI: 10.1002/smll.202106624

fieldcompare: A Python package for regression testing simulation results

Autori: Dennis Gläser; Timo Koch; Sören Peters; Sven Marcus; Bernd Flemisch
Pubblicato in: Journal of Open Source Software, 2023, ISSN 2475-9066
Editore: Journal of Open Source Software
DOI: 10.21105/joss.04905

SCN1A overexpression, associated with a genomic region marked by a risk variant for a common epilepsy, raises seizure susceptibility

Autori: Katri Silvennoinen, Kinga Gawel, Despina Tsortouktzidis, Julika Pitsch, Saud Alhusaini, Karen M. J. van Loo, Richard Picardo, Zuzanna Michalak, Susanna Pagni, Helena Martins Custodio, James Mills, Christopher D. Whelan, Greig I. de Zubicaray, Katie L. McMahon, Wietske van der Ent, Karolina J. Kirstein-Smardzewska, Ettore Tiraboschi, Jonathan M. Mudge, Adam Frankish, Maria Thom, Margaret J. Wright,
Pubblicato in: Acta Neuropathologica, 2022, ISSN 0001-6322
Editore: Springer Verlag
DOI: 10.1007/s00401-022-02429-0

Knockdown of sarcolipin (SLN) impairs substrate utilization in human skeletal muscle cells

Autori: Abel M. Mengeste; Parmeshwar Katare; Andrea Dalmao Fernandez; Jenny Lund; Hege G. Bakke; David Baker; Stefano Bartesaghi; Xiao-Rong Peng; Arild C. Rustan; G. Hege Thoresen; Eili Tranheim Kase
Pubblicato in: Molecular Biology Reports, 2022, ISSN 0301-4851
Editore: Kluwer Academic Publishers
DOI: 10.1007/s11033-022-07387-0

Design and clinical application of injectable hydrogels for musculoskeletal therapy

Autori: Øystein Øvrebø; Giuseppe Perale; Jonathan P. Wojciechowski; Cécile Echalier; Jonathan R. T. Jeffers; Molly M. Stevens; Håvard J. Haugen; Filippo Rossi
Pubblicato in: Bioengineering & Translational Medicine, 2022, ISSN 2380-6761
Editore: American Institute of Chemical Engineers
DOI: 10.1002/btm2.10295

The cholesterol transport protein GRAMD1C regulates autophagy initiation and mitochondrial bioenergetics

Autori: Matthew Yoke Wui Ng, Chara Charsou, Ana Lapao, Sakshi Singh, Laura Trachsel-Moncho, Sebastian W. Schultz, Sigve Nakken, Michael J. Munson & Anne Simonsen
Pubblicato in: nature communications, 2022, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-022-3

Projection-based resolved interface 1D-3D mixed-dimension method for embedded tubular network systems

Autori: Timo Koch
Pubblicato in: Computers & Mathematics with Applications, 2022, ISSN 0898-1221
Editore: Pergamon Press Ltd.
DOI: 10.1016/j.camwa.2022.01.021

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