SCIENTIA-FELLOWS II: International Postdoctoral Fellowship Programme

Deliverables

3rd call: communication link to Euraxess

Information to the Project Officer about the call publication and a screenshot of call announcement

1st call: communication link to Euroaxess

Information to the Project Officer about the call publication and a screenshot of call announcement

2nd call: communication link to Euroaxess

Information to the Project Officer about the call publication and a screenshot of call announcement

Publications

Colorimetric and Electrochemical Screening for Early Detection of Diabetes Mellitus and Diabetic Retinopathy—Application of Sensor Arrays and Machine Learning

Author(s): Georgina Faura; Gerard Boix-Lemonche; Anne Kristin Holmeide; Rasa Verkauskiene; Vallo Volke; Jelizaveta Sokolovska; Goran Petrovski
Published in: Sensors, Issue Vol 22, Iss 718, p 718, 2022, ISSN 1424-8220
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/s22030718

Divalent ligand-monovalent molecule binding.

Author(s): Mathijs Janssen; Harald Stenmark; Andreas Carlson
Published in: Soft Matter, 2021, ISSN 1744-683X
Publisher: Royal Society of Chemistry
DOI: 10.1039/d1sm00070e

Genetic Association Between Schizophrenia and Cortical Brain Surface Area and Thickness

Author(s): Weiqiu Cheng, Oleksandr Frei, Dennis van der Meer, Yunpeng Wang, Kevin S. O’Connell, Yunhan Chu, Shahram Bahrami, Alexey A. Shadrin, Dag Alnæs, Guy F. L. Hindley, Aihua Lin, Naz Karadag, Chun-Chieh Fan, Lars T. Westlye, Tobias Kaufmann, Espen Molden, Anders M. Dale, Srdjan Djurovic, Olav B. Smeland, Ole A. Andreassen
Published in: JAMA Psychiatry, Issue 78/9, 2021, Page(s) 1020, ISSN 2168-622X
Publisher: American Medical Association
DOI: 10.1001/jamapsychiatry.2021.1435

Intracorneal Implantation of 3D Bioprinted Scaffolds Containing Mesenchymal Stromal Cells Using Femtosecond‐Laser‐Assisted Intrastromal Keratoplasty

Author(s): Gerard Boix‐Lemonche; Richard M. Nagymihaly; Essi M. Niemi; Natasha Josifovska; Stian Johansen; Morten C. Moe; Hanne Scholz; Goran Petrovski
Published in: Macromolecular Bioscience, 2023, ISSN 1616-5195
Publisher: Wiley-VCH GmbH
DOI: 10.1002/mabi.202200422

The human lens is capable of trilineage differentiation towards osteo-, chondro-, and adipogenesis—a model for studying cataract pathogenesis

Author(s): Boix-Lemonche, Gerard; Nagymihaly, Richard M.; Lumi, Xhevat; Petrovski, Goran
Published in: Frontiers in Bioengineering and Biotechnology, 2023, ISSN 2296-4185
Publisher: Frontiers Media S.A.
DOI: 10.3389/fbioe.2023.1164795

Determination of CAR T cell metabolism in an optimized protocol

Author(s): Sandy Joaquina; Christopher Forcados; Benjamin Caulier; Benjamin Caulier; Benjamin Caulier; Else Marit Inderberg; Sébastien Wälchli
Published in: Frontiers in Bioengineering and Biotechnology, Vol 11 (2023), Issue 2, 2023, ISSN 2296-4185
Publisher: Frontiers Media SA
DOI: 10.3389/fbioe.2023.1207576

Thermoplastic Elastomer (TPE)–Poly(Methyl Methacrylate) (PMMA) Hybrid Devices for Active Pumping PDMS-Free Organ-on-a-Chip Systems

Author(s): Mathias Busek, Steffen Nøvik, Aleksandra Aizenshtadt, Mikel Amirola-Martinez, Thomas Combriat, Stefan Grünzner, Stefan Krauss
Published in: Biosensors, Issue 11/5, 2021, Page(s) 162, ISSN 2079-6374
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/bios11050162

Pump-less, recirculating organ-on-a-chip (rOoC) platform

Author(s): M. Busek; A. Aizenshtadt; T. Koch; A. Frank; L. Delon; M. Amirola Martinez; A. Golovin; C. Dumas; J. Stokowiec; S. Gruenzner; E. Melum; S. Krauss
Published in: Lab on a Chip, 2023, ISSN 1473-0197
Publisher: Royal Society of Chemistry
DOI: 10.1039/d2lc00919f

Evolutionary and functional history of the Escherichia coli K1 capsule

Author(s): Sergio Arredondo-Alonso, George Blundell-Hunter, Zuyi Fu, Rebecca A. Gladstone, Alfred Fillol-Salom, Jessica Loraine, Elaine Cloutman-Green, Pål J. Johnsen, Ørjan Samuelsen, Anna K. Pöntinen, François Cléon, Susana Chavez-Bueno, Miguel A. De la Cruz, Miguel A. Ares, Manivanh Vongsouvath, Agnieszka Chmielarczyk, Carolyne Horner, Nigel Klein, Alan McNally, Joice N. Reis, José R. Penadés, Nich
Published in: nature communications, 2023, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-023-39052-w

GAK and PRKCD are positive regulators of PRKN-independent mitophagy

Author(s): Michael J. Munson, Benan J. Mathai, Matthew Yoke Wui Ng, Laura Trachsel-Moncho, Laura R. de la Ballina, Sebastian W. Schultz, Yahyah Aman, Alf H. Lystad, Sakshi Singh, Sachin Singh, Jørgen Wesche, Evandro F. Fang, Anne Simonsen
Published in: Nature Communications, Issue 12/1, 2021, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-021-26331-7

Estimating the Logarithm of Characteristic Function and Stability Parameter for Symmetric Stable Laws

Author(s): Jüri Lember; Annika Krutto
Published in: Methodology and Computing in Applied Probability, 2021, ISSN 1387-5841
Publisher: Kluwer Academic Publishers
DOI: 10.1007/s11009-021-09908-z

Pharmacologic Control of CAR T Cells.

Author(s): Benjamin Caulier; Jorrit M. Enserink; Sébastien Wälchli
Published in: International Journal of Molecular Sciences, 2021, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms22094320

Robust monolithic solvers for the Stokes-Darcy problem with the Darcy equation in primal form

Author(s): Wietse M. Boon; Timo Koch; Miroslav Kuchta; Kent-André Mardal
Published in: SIAM Journal on Scientific Computing, 2022, ISSN 1064-8275
Publisher: Society for Industrial and Applied Mathematics
DOI: 10.1137/21m1452974

Mge-cluster: a reference-free approach for typing bacterial plasmids

Author(s): Sergio Arredondo-Alonso, Rebecca A Gladstone, Anna K Pöntinen, João A Gama, Anita C Schürch, Val F Lanza, Pål Jarle Johnsen, Ørjan Samuelsen, Gerry Tonkin-Hill, Jukka Corander
Published in: NAR Genomics and Bioinformatics, 2023, ISSN 2631-9268
Publisher: Oxford University Press
DOI: 10.1093/nargab/lqad066

Recovering Escherichia coli Plasmids in the Absence of Long-Read Sequencing Data

Author(s): Julian A. Paganini, Nienke L. Plantinga, Sergio Arredondo-Alonso, Rob J. L. Willems, Anita C. Schürch
Published in: Microorganisms, Issue 9/8, 2021, Page(s) 1613, ISSN 2076-2607
Publisher: MDPI
DOI: 10.3390/microorganisms9081613

Mixed fatty acid-phospholipid protocell networks.

Author(s): Inga Põldsalu; Elif Senem Köksal; Irep Gözen
Published in: Physical Chemistry Chemical Physics, 2021, ISSN 1463-9076
Publisher: Royal Society of Chemistry
DOI: 10.1039/d1cp03832j

Lithium increases mitochondrial respiration in iPSC-derived neural precursor cells from lithium responders

Author(s): Jordi Requena Osete, Ibrahim A. Akkouh, Denis Reis de Assis, Attila Szabo, Evgeniia Frei, Timothy Hughes, Olav B. Smeland, Nils Eiel Steen, Ole A. Andreassen, Srdjan Djurovic
Published in: Molecular Psychiatry, 2021, ISSN 1359-4184
Publisher: Nature Publishing Group
DOI: 10.1038/s41380-021-01164-4

A (Dual) Network Model for Heat Transfer in Porous Media

Author(s): Timo Koch, Kilian Weishaupt, Johannes Müller, Bernhard Weigand, Rainer Helmig
Published in: Transport in Porous Media, Issue 140/1, 2021, Page(s) 107-141, ISSN 0169-3913
Publisher: Kluwer Academic Publishers
DOI: 10.1007/s11242-021-01602-5

A high-throughput multiplexing and selection strategy to complete bacterial genomes

Author(s): Alonso, Sergio Arredondo; Pöntinen, Anna K.; Cleon, Francois Pierre Alexandre; Gladstone, Rebecca Ashley; Schürch, Anita C.; Johnsen, Pål Jarle; Samuelsen, Ørjan; Corander, Jukka
Published in: GigaScience, 2021, ISSN 2047-217X
Publisher: Oxford University Press
DOI: 10.1093/gigascience/giab079

Nonlinear mixed-dimension model for embedded tubular networks with application to root water uptake

Author(s): Timo Koch; Hanchuan Wu; Martin Schneider
Published in: Journal of Computational Physics, 2022, ISSN 0021-9991
Publisher: Academic Press
DOI: 10.1016/j.jcp.2021.110823

Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe

Author(s): Gerry Tonkin-Hill; Rebecca A Gladstone; Anna K Pöntinen; Sergio Arredondo-Alonso; Stephen D Bentley; Jukka Corander
Published in: Genome Research, 2023, ISSN 1088-9051
Publisher: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gr.277340.122

Mutational analysis and protein profiling predict drug sensitivity in multiple myeloma cell lines

Author(s): Mariaserena Giliberto; Leonardo Miranda Santana; Toril Holien; Kristine Misund; Sigve Nakken; Daniel Vodak; Eivind Hovig; Leonardo A. Meza-Zepeda; Eivind Coward; Anders Waage; Kjetil Taskén; Sigrid S. Skånland
Published in: Frontiers in Oncology, 2022, ISSN 2234-943X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fonc.2022.1040730

Shared genetic architecture between schizophrenia and subcortical brain volumes implicates early neurodevelopmental processes and brain development in childhood

Author(s): Cheng, Weiqiu; van der Meer, Dennis; Parker, Nadine; Hindley, Guy Frederick Lanyon; O'Connell, Kevin Sean; Wang, Yunpeng; Shadrin, Alexey; Alnæs, Dag; Bahrami, Shahram; Lin, Aihua; Karadag, Naz; Holen, Børge; Fernández-Cabello, Sara; Fan, Chun-Chieh; Dale, Anders; Djurovic, Srdjan; Westlye, Lars Tjelta; Frei, Oleksandr; Smeland, Olav Bjerkehagen; Andreassen, Ole
Published in: molecular psychiatry, 2022, ISSN 1359-4184
Publisher: Nature Publishing Group
DOI: 10.1038/s41380-022-01751-z

Charting the Landscape of Genetic Overlap Between Mental Disorders and Related Traits Beyond Genetic Correlation

Author(s): Guy Hindley, Oleksandr Frei, Alexey A Shadrin, Weiqiu Cheng, Kevin S O'Connell, Romain Icick, Nadine Parker, Shahram Bahrami, Naz Karadag, Daniel Roelfs, Børge Holen, Aihua Lin, Chun C Fan, Srdjan Djurovic, Anders M Dale, Olav B Smeland, Ole A Andreassen
Published in: American Journal of Psychiatry, 2022, ISSN 0002-953X
Publisher: American Psychiatric Publishing, Inc.
DOI: 10.1176/appi.ajp.21101051

Reversible heat production during electric double layer buildup depends sensitively on the electrolyte and its reservoir

Author(s): Fabian Glatzel, Mathijs Janssen, Andreas Härtel
Published in: The Journal of Chemical Physics, Issue 154/6, 2021, Page(s) 064901, ISSN 0021-9606
Publisher: American Institute of Physics
DOI: 10.1063/5.0037218

Bacterial Toxin-Triggered Release of Antibiotics from Capsosomes Protects a Fly Model from Lethal Methicillin-Resistant Staphylococcus aureus (MRSA) Infection

Author(s): Renée L. Tonkin, Anna Klöckner, Adrian Najer, Carolina J. Simoes da Silva, Cécile Echalier, Marc S. Dionne, Andrew M. Edwards, Molly M. Stevens
Published in: Advanced Healthcare Materials, 2022, ISSN 2192-2659
Publisher: World Scientific
DOI: 10.1002/adhm.202200036

Seizing the moment: Zebrafish epilepsy models

Author(s): Kinga Gawel, Melanie Langlois, Teresa Martins, Wietske van der Ent, Ettore Tiraboschi, Maxime Jacmin, Alexander D. Crawford, Camila V. Esguerra
Published in: Neuroscience & Biobehavioral Reviews, Issue 116, 2020, Page(s) 1-20, ISSN 0149-7634
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.neubiorev.2020.06.010

Retinal Pigment Epithelium Cell Development: Extrapolating Basic Biology to Stem Cell Research

Author(s): Santosh Gupta; Lyubomyr Lytvynchuk; Taras Ardan; Hana Studenovska; Georgina Faura; Lars Eide; Ljubo Znaor; Slaven Erceg; Knut Stieger; Jan Motlik; Kapil Bharti; Goran Petrovski
Published in: Biomedicines, Vol 11, Iss 2, p 310 (2023), Issue 1, 2023, ISSN 2227-9059
Publisher: MDPI
DOI: 10.3390/biomedicines11020310

Spontaneous Formation of Prebiotic Compartment Colonies on Hadean Earth and Pre-Noachian Mars

Author(s): Köksal, Elif; Põldsalu, Inga; Friis, Henrik; Mojzsis, Stephen J; Bizzarro, Martin; Gözen, Irep
Published in: chemsystemschem, 2022, ISSN 2570-4206
Publisher: Wiley-VCH GmbH
DOI: 10.1002/syst.202200012

Quantitative analysis of neuronal mitochondrial movement reveals patterns resulting from neurotoxicity of rotenone and 6-hydroxydopamine

Author(s): Rui F. Simões; Rute Pino; Maurício Moreira-Soares; Jaromira Kovarova; Jiri Neuzil; Jiri Neuzil; Rui D. M. Travasso; Paulo J. Oliveira; Teresa Cunha-Oliveira; Francisco B. Pereira
Published in: The FASEB Journal, 2021, ISSN 0892-6638
Publisher: Federation of American Societies for Experimental Biology
DOI: 10.1096/fj.202100899r

Transmission Line Circuit and Equation for an Electrolyte-Filled Pore of Finite Length

Author(s): Mathijs Janssen
Published in: PHYSICAL REVIEW LETTERS, 2021, ISSN 0031-9007
Publisher: American Physical Society
DOI: 10.1103/physrevlett.126.136002

Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era

Author(s): Anna K. Pöntinen, Janetta Top, Sergio Arredondo-Alonso, Gerry Tonkin-Hill, Ana R. Freitas, Carla Novais, Rebecca A. Gladstone, Maiju Pesonen, Rodrigo Meneses, Henri Pesonen, John A. Lees, Dorota Jamrozy, Stephen D. Bentley, Val F. Lanza, Carmen Torres, Luisa Peixe, Teresa M. Coque, Julian Parkhill, Anita C. Schürch, Rob J. L. Willems, Jukka Corander
Published in: Nature Communications, Issue 12/1, 2021, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-021-21749-5

Cryo-EM structure of Helicobacter pylori urease with an inhibitor in the active site at 2.0 Å resolution

Author(s): Eva S. Cunha, Xiaorui Chen, Marta Sanz-Gaitero, Deryck J. Mills, Hartmut Luecke
Published in: Nature Communications, Issue 12/1, 2021, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-020-20485-6

Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections in Norway in 2002–17: a nationwide, longitudinal, microbial population genomic study

Author(s): Gladstone, Rebecca Ashley; McNally, Alan; Pöntinen, Anna Kaarina; Tonkin-Hill, Gerry; Lees, John A.; Skytén, Kusti Onni; Cléon, Francois Pierre Alexandre; Christensen, Martin Owczarek Korsner; Haldorsen, Bjørg; Bye, Kristina K.; Gammelsrud, Karianne Wiger; Hjetland, Reidar; Kümmel, Angela; Larsen, Hege; Lindemann, Paul Christoffer; Löhr, Iren Høyland; Marvik, Åshild; Nilsen, Einar; Noer, M
Published in: The Lancet Microbe, 2021, ISSN 2666-5247
Publisher: Elsevier Ltd.
DOI: 10.1016/s2666-5247(21)00031-8

Regulatory Network of PD1 Signaling Is Associated with Prognosis in Glioblastoma Multiforme

Author(s): Camila M. Lopes-Ramos; Tatiana Belova; Tess H. Brunner; Marouen Ben Guebila; Daniel Osorio; John Quackenbush; Marieke L. Kuijjer; Marieke L. Kuijjer
Published in: Cancer Research, 2021, ISSN 0008-5472
Publisher: American Association for Cancer Research
DOI: 10.1158/0008-5472.can-21-0730

Using iPSC Models to Understand the Role of Estrogen in Neuron-Glia Interactions in Schizophrenia and Bipolar Disorder.

Author(s): Denis Reis de Assis; Attila Szabo; Jordi Requena Osete; Francesca Puppo; Kevin S. O’Connell; Ibrahim A. Akkouh; Timothy P. Hughes; Evgeniia Frei; Ole A. Andreassen; Srdjan Djurovic
Published in: 10, Issue 1, 2021, ISSN 2073-4409
Publisher: MDPI
DOI: 10.3390/cells10020209

Academic User View: Organ-on-a-Chip Technology

Author(s): Mathias Busek; Aleksandra Aizenshtadt; Mikel Amirola-Martinez; Ludivine Delon; Stefan Krauss
Published in: biosensors, 2022, ISSN 2079-6374
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/bios12020126

Estimates for the astrocyte endfoot sheath permeability of the extra-cellular pathway

Author(s): Timo Koch; Vegard Vinje; Kent-André Mardal
Published in: Fluids and Barriers of the CNS, 2023, ISSN 2045-8118
Publisher: BioMed Central
DOI: 10.1186/s12987-023-00421-8

Dynamic density functional theory for the charging of electric double layer capacitors

Author(s): Ma, Ke Janssen, Mathijs Adriaan Lian, Cheng Van Roij, René
Published in: Journal of Chemical Physics, 2022, ISSN 0021-9606
Publisher: American Institute of Physics
DOI: 10.1063/5.0081827

Protocells: Milestones and Recent Advances

Author(s): Irep Gözen; Elif Senem Köksal; Inga Põldsalu; Lin Xue; Karolina Spustova; Esteban Pedrueza‐Villalmanzo; Ruslan Ryskulov; Fanda Meng; Aldo Jesorka
Published in: Small, 2022, ISSN 1613-6829
Publisher: Wiley-VCH GmbH
DOI: 10.1002/smll.202106624

fieldcompare: A Python package for regression testing simulation results

Author(s): Dennis Gläser; Timo Koch; Sören Peters; Sven Marcus; Bernd Flemisch
Published in: Journal of Open Source Software, 2023, ISSN 2475-9066
Publisher: Journal of Open Source Software
DOI: 10.21105/joss.04905

SCN1A overexpression, associated with a genomic region marked by a risk variant for a common epilepsy, raises seizure susceptibility

Author(s): Katri Silvennoinen, Kinga Gawel, Despina Tsortouktzidis, Julika Pitsch, Saud Alhusaini, Karen M. J. van Loo, Richard Picardo, Zuzanna Michalak, Susanna Pagni, Helena Martins Custodio, James Mills, Christopher D. Whelan, Greig I. de Zubicaray, Katie L. McMahon, Wietske van der Ent, Karolina J. Kirstein-Smardzewska, Ettore Tiraboschi, Jonathan M. Mudge, Adam Frankish, Maria Thom, Margaret J. Wright,
Published in: Acta Neuropathologica, 2022, ISSN 0001-6322
Publisher: Springer Verlag
DOI: 10.1007/s00401-022-02429-0

Knockdown of sarcolipin (SLN) impairs substrate utilization in human skeletal muscle cells

Author(s): Abel M. Mengeste; Parmeshwar Katare; Andrea Dalmao Fernandez; Jenny Lund; Hege G. Bakke; David Baker; Stefano Bartesaghi; Xiao-Rong Peng; Arild C. Rustan; G. Hege Thoresen; Eili Tranheim Kase
Published in: Molecular Biology Reports, 2022, ISSN 0301-4851
Publisher: Kluwer Academic Publishers
DOI: 10.1007/s11033-022-07387-0

Design and clinical application of injectable hydrogels for musculoskeletal therapy

Author(s): Øystein Øvrebø; Giuseppe Perale; Jonathan P. Wojciechowski; Cécile Echalier; Jonathan R. T. Jeffers; Molly M. Stevens; Håvard J. Haugen; Filippo Rossi
Published in: Bioengineering & Translational Medicine, 2022, ISSN 2380-6761
Publisher: American Institute of Chemical Engineers
DOI: 10.1002/btm2.10295

The cholesterol transport protein GRAMD1C regulates autophagy initiation and mitochondrial bioenergetics

Author(s): Matthew Yoke Wui Ng, Chara Charsou, Ana Lapao, Sakshi Singh, Laura Trachsel-Moncho, Sebastian W. Schultz, Sigve Nakken, Michael J. Munson & Anne Simonsen
Published in: nature communications, 2022, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-022-3

Projection-based resolved interface 1D-3D mixed-dimension method for embedded tubular network systems

Author(s): Timo Koch
Published in: Computers & Mathematics with Applications, 2022, ISSN 0898-1221
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.camwa.2022.01.021

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