Function and Evolution of Attack and Response Strategies during Allelopathy in Plants

Publications

Transposon dynamics in the emerging oilseed crop Thlaspi arvense

Auteurs: Adrián Contreras-Garrido, Dario Galanti, Andrea Movilli, Claude Becker, Oliver Bossdorf, Hajk-Georg Drost, Detlef Weigel
Publié dans: PLOS Genetics, Numéro 20, 2024, Page(s) e1011141, ISSN 1553-7404
Éditeur: PLoS
DOI: 10.1371/journal.pgen.1011141

ARADEEPOPSIS, an Automated Workflow for Top-View Plant Phenomics using Semantic Segmentation of Leaf States

Auteurs: Patrick Huether, Niklas Schandry, Katharina Jandrasits, Ilja Bezrukov, Claude Becker
Publié dans: The Plant Cell, Numéro 32, 2020, Page(s) 3674-3688, ISSN 1532-298X
Éditeur: Oxford University Press
DOI: 10.1105/tpc.20.00318

Genetic and environmental drivers of large-scale epigenetic variation in Thlaspi arvense

Auteurs: Dario Galanti; Daniela Ramos-Cruz; Adam Nunn; Isaac Rodríguez-Arévalo; J.F. Scheepens; Claude Becker; Oliver Bossdorf
Publié dans: PLoS Genetics, Numéro 2, 2022, ISSN 1553-7404
Éditeur: PLOS
DOI: 10.1371/journal.pgen.1010452

The lactonase BxdA mediates metabolic specialisation of maize root bacteria to benzoxazinoids

Auteurs: Lisa Thoenen, Marco Kreuzer, Christine Pestalozzi, Matilde Florean, Pierre Mateo, Tobias Züst, Anlun Wei, Caitlin Giroud, Liza Rouyer, Valentin Gfeller, Matheus D. Notter, Eva Knoch, Siegfried Hapfelmeier, Claude Becker, Niklas Schandry, Christelle A. M. Robert, Tobias G. Köllner, Rémy Bruggmann, Matthias Erb, Klaus Schlaeppi
Publié dans: Nature Communications, Numéro 15, 2024, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-024-49643-w

Chromosome-level Thlaspi arvense genome provides new tools for translational research and for a newly domesticated cash cover crop of the cooler climates

Auteurs: Adam Nunn, Isaac Rodríguez-Arévalo, Zenith Tandukar, Katherine Frels, Adrián Contreras-Garrido, Pablo Carbonell-Bejerano, Panpan Zhang, Daniela Ramos Cruz, Katharina Jandrasits, Christa Lanz, Anthony Brusa, Marie Mirouze, Kevin Dorn, David W Galbraith, Brice A. Jarvis, John C. Sedbrook, Donald L. Wyse, Christian Otto, David Langenberger, Peter F. Stadler, Detlef Weigel, M. David Marks, James A.
Publié dans: Plant Biotechnology Journal, 2022, ISSN 1467-7652
Éditeur: John Wiley & Sons Ltd
DOI: 10.1111/pbi.13775

The role of plant epigenetics in biotic interactions

Auteurs: Conchita Alonso, Daniela Ramos-Cruz, Claude Becker
Publié dans: New Phytologist, Numéro 221/2, 2019, Page(s) 731-737, ISSN 0028-646X
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/nph.15408

Allelopathic Plants: Models for Studying Plant–Interkingdom Interactions

Auteurs: Niklas Schandry, Claude Becker
Publié dans: Trends in Plant Science, Numéro 25/2, 2020, Page(s) 176-185, ISSN 1360-1385
Éditeur: Elsevier BV
DOI: 10.1016/j.tplants.2019.11.004

Transcriptional response of a target plant to benzoxazinoid and diterpene allelochemicals highlights commonalities in detoxification

Auteurs: Eva Knoch; Judit Kovács; Sebastian Deiber; Keisuke Tomita; Reshi Shanmuganathan; Núria Serra Serra; Kazunori Okada; Claude Becker; Niklas Schandry
Publié dans: BMC Plant Biology, Numéro 2, 2022, ISSN 1471-2229
Éditeur: BioMed Central
DOI: 10.1186/s12870-022-03780-w

MethylScore, a pipeline for accurate and context-aware identification of differentially methylated regions from population-scale plant whole-genome bisulfite sequencing data

Auteurs: Patrick Hüther; Jörg Hagmann; Adam Nunn; Ioanna Kakoulidou; Rahul Pisupati; David Langenberger; Detlef Weigel; Frank Johannes; Sebastian J. Schultheiss; Claude Becker
Publié dans: Quantitative Plant Biology, Numéro 3, 2022, ISSN 2632-8828
Éditeur: Cambridge University Press
DOI: 10.1017/qpb.2022.14

Plant-derived benzoxazinoids act as antibiotics and shape bacterial communities

Auteurs: Niklas Schandry, Katharaina Jandrasits, Ruben Garrido-Oter Claude Becker
Publié dans: bioRxiv, 2019
Éditeur: Cold Spring Harbor Laboratory Press
DOI: 10.1101/2021.01.12.425818

aradeepopsis: From images to phenotypic traits using deep transfer learning

Auteurs: Patrick Hüther, Niklas Schandry, Katharina Jandrasits, Ilja Bezrukov, Claude Becker
Publié dans: bioRxiv, 2020
Éditeur: Cold Spring Harbor Laboratory
DOI: 10.1101/2020.04.01.018192

MethylScore, a pipeline for accurate and context-aware identification of differentially methylated regions from population-scale plant WGBS data

Auteurs: Patrick Hüther, Jörg Hagmann, Adam Nunn, Ioanna Kakoulidou, Rahul Pisupati, David Langenberger, Detlef Weigel, Frank Johannes, Sebastian J. Schultheiss, Claude Becker
Publié dans: bioRxiv, 2022
Éditeur: Cold Spring Harbor Laboratory Press
DOI: 10.1101/2022.01.06.475031

Transcriptional response of a target plant to benzoxazinoid and diterpene allelochemicals highlights commonalities in detoxification

Auteurs: Eva Knoch, Judit Kovács, Sebastian Deiber, Reshi Shanmuganathan, Núria Serra Serra, Claude Becker, Niklas Schandry
Publié dans: bioRxiv, 2022
Éditeur: Cold Spring Harbor Laboratory Press
DOI: 10.1101/2022.02.21.480921

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