Function and Evolution of Attack and Response Strategies during Allelopathy in Plants

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Pubblicazioni

Transposon dynamics in the emerging oilseed crop Thlaspi arvense

Autori: Adrián Contreras-Garrido, Dario Galanti, Andrea Movilli, Claude Becker, Oliver Bossdorf, Hajk-Georg Drost, Detlef Weigel
Pubblicato in: PLOS Genetics, Numero 20, 2024, Pagina/e e1011141, ISSN 1553-7404
Editore: PLoS
DOI: 10.1371/journal.pgen.1011141

ARADEEPOPSIS, an Automated Workflow for Top-View Plant Phenomics using Semantic Segmentation of Leaf States

Autori: Patrick Huether, Niklas Schandry, Katharina Jandrasits, Ilja Bezrukov, Claude Becker
Pubblicato in: The Plant Cell, Numero 32, 2020, Pagina/e 3674-3688, ISSN 1532-298X
Editore: Oxford University Press
DOI: 10.1105/tpc.20.00318

Genetic and environmental drivers of large-scale epigenetic variation in Thlaspi arvense

Autori: Dario Galanti; Daniela Ramos-Cruz; Adam Nunn; Isaac Rodríguez-Arévalo; J.F. Scheepens; Claude Becker; Oliver Bossdorf
Pubblicato in: PLoS Genetics, Numero 2, 2022, ISSN 1553-7404
Editore: PLOS
DOI: 10.1371/journal.pgen.1010452

The lactonase BxdA mediates metabolic specialisation of maize root bacteria to benzoxazinoids

Autori: Lisa Thoenen, Marco Kreuzer, Christine Pestalozzi, Matilde Florean, Pierre Mateo, Tobias Züst, Anlun Wei, Caitlin Giroud, Liza Rouyer, Valentin Gfeller, Matheus D. Notter, Eva Knoch, Siegfried Hapfelmeier, Claude Becker, Niklas Schandry, Christelle A. M. Robert, Tobias G. Köllner, Rémy Bruggmann, Matthias Erb, Klaus Schlaeppi
Pubblicato in: Nature Communications, Numero 15, 2024, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-024-49643-w

Chromosome-level Thlaspi arvense genome provides new tools for translational research and for a newly domesticated cash cover crop of the cooler climates

Autori: Adam Nunn, Isaac Rodríguez-Arévalo, Zenith Tandukar, Katherine Frels, Adrián Contreras-Garrido, Pablo Carbonell-Bejerano, Panpan Zhang, Daniela Ramos Cruz, Katharina Jandrasits, Christa Lanz, Anthony Brusa, Marie Mirouze, Kevin Dorn, David W Galbraith, Brice A. Jarvis, John C. Sedbrook, Donald L. Wyse, Christian Otto, David Langenberger, Peter F. Stadler, Detlef Weigel, M. David Marks, James A.
Pubblicato in: Plant Biotechnology Journal, 2022, ISSN 1467-7652
Editore: John Wiley & Sons Ltd
DOI: 10.1111/pbi.13775

The role of plant epigenetics in biotic interactions

Autori: Conchita Alonso, Daniela Ramos-Cruz, Claude Becker
Pubblicato in: New Phytologist, Numero 221/2, 2019, Pagina/e 731-737, ISSN 0028-646X
Editore: Blackwell Publishing Inc.
DOI: 10.1111/nph.15408

Allelopathic Plants: Models for Studying Plant–Interkingdom Interactions

Autori: Niklas Schandry, Claude Becker
Pubblicato in: Trends in Plant Science, Numero 25/2, 2020, Pagina/e 176-185, ISSN 1360-1385
Editore: Elsevier BV
DOI: 10.1016/j.tplants.2019.11.004

Transcriptional response of a target plant to benzoxazinoid and diterpene allelochemicals highlights commonalities in detoxification

Autori: Eva Knoch; Judit Kovács; Sebastian Deiber; Keisuke Tomita; Reshi Shanmuganathan; Núria Serra Serra; Kazunori Okada; Claude Becker; Niklas Schandry
Pubblicato in: BMC Plant Biology, Numero 2, 2022, ISSN 1471-2229
Editore: BioMed Central
DOI: 10.1186/s12870-022-03780-w

MethylScore, a pipeline for accurate and context-aware identification of differentially methylated regions from population-scale plant whole-genome bisulfite sequencing data

Autori: Patrick Hüther; Jörg Hagmann; Adam Nunn; Ioanna Kakoulidou; Rahul Pisupati; David Langenberger; Detlef Weigel; Frank Johannes; Sebastian J. Schultheiss; Claude Becker
Pubblicato in: Quantitative Plant Biology, Numero 3, 2022, ISSN 2632-8828
Editore: Cambridge University Press
DOI: 10.1017/qpb.2022.14

Plant-derived benzoxazinoids act as antibiotics and shape bacterial communities

Autori: Niklas Schandry, Katharaina Jandrasits, Ruben Garrido-Oter Claude Becker
Pubblicato in: bioRxiv, 2019
Editore: Cold Spring Harbor Laboratory Press
DOI: 10.1101/2021.01.12.425818

aradeepopsis: From images to phenotypic traits using deep transfer learning

Autori: Patrick Hüther, Niklas Schandry, Katharina Jandrasits, Ilja Bezrukov, Claude Becker
Pubblicato in: bioRxiv, 2020
Editore: Cold Spring Harbor Laboratory
DOI: 10.1101/2020.04.01.018192

MethylScore, a pipeline for accurate and context-aware identification of differentially methylated regions from population-scale plant WGBS data

Autori: Patrick Hüther, Jörg Hagmann, Adam Nunn, Ioanna Kakoulidou, Rahul Pisupati, David Langenberger, Detlef Weigel, Frank Johannes, Sebastian J. Schultheiss, Claude Becker
Pubblicato in: bioRxiv, 2022
Editore: Cold Spring Harbor Laboratory Press
DOI: 10.1101/2022.01.06.475031

Sub-functionalization and epigenetic regulation of a biosynthetic gene cluster in<i>Solanaceae</i>

Autori: Santiago Priego-Cubero, Eva Knoch, Zhidan Wang, Saleh Alseekh, Karl-Heinz Braun, Philipp Chapman, Alisdair Fernie, Chang Liu, Claude Becker
Pubblicato in: bioRxiv, 2024
Editore: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.10.02.615186

Transcriptional response of a target plant to benzoxazinoid and diterpene allelochemicals highlights commonalities in detoxification

Autori: Eva Knoch, Judit Kovács, Sebastian Deiber, Reshi Shanmuganathan, Núria Serra Serra, Claude Becker, Niklas Schandry
Pubblicato in: bioRxiv, 2022
Editore: Cold Spring Harbor Laboratory Press
DOI: 10.1101/2022.02.21.480921

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