Resultado final
Midterm report on the success of the vMTB in referring patients to one of the clinical trials. Report with an overview of recruited subjects and on potential recruiting problems or delays and measures to rectify them
Project Office and Knowledge Management System up and runningProject Office and Knowledge Management System up and running Operational Project manager allocated for the project and external and internal websites done Members of Exploitation and Dissemination panels assigned Materials for project presentation produced
Completion of UH retrospective HGSOC cohortCompletion of UH retrospective HGSOC cohort.
First study subject approvals packageFirst study subject approvals package Final version of observational study protocol approved by the local Ethics committee and the study protocol of the first observational part will be submitted to ClinicalTrialscov for registration
Midterm recruitment reportMidterm recruitment report. At the time point when 50% of the study population is expected to have been recruited.
Bayesian network method ready for dynamic multi-omics integrationBayesian network method ready for dynamic multi-omics integration.
Set up of single-cell RNA-seq and cell hashing for HGSOCSet up of singlecell RNAseq and cell hashing for HGSOC
First study subject approvals package: Final version of clinical trial protocolFirst study subject approvals package. Final version of clinical trial protocol: Study protocol approved by local Ethics committee, TUCH and FIMEA. Clinical trial protocol submitted to ClinicalTrials.cov for registration.
Preliminary report on regulatory issues in personalised medicinePreliminary report on regulatory issues in personalised medicine.
Performance evaluation of the Predictor ToolPerformance evaluation of the Predictor Tool. The tool has been validated in independent HGSOC datasets.
Full design documentation for the eXplAIner softwareData Management Plan A detailed and updated Data Management Plan available on the project website where the latest updated version will be available
Fully functional, documented, and publicly available open-source eXplAIner software.
Publicaciones
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Miguel M. Álvarez, Josep Biayna & Fran Supek
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Nature Communications, Edición 13(4520), 2022, ISSN 2041-1723
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Nature Publishing Group
DOI:
10.1038/s41467-022-32285-1
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Aikaterini Skorda, Anna Røssberg Lauridsen, Chengnan Wu, Jinrong Huang, Monika Mrackova, Nuggi Ingholt Winther, Vanessa Jank , Zsofia Sztupinszki, Robert Strauss , Mesut Bilgin, Kenji Maeda, Bin Liu, Yonglun Luo, Marja Jäättelä,Tuula Kallunki
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Oncogene, 2023, ISSN 1476-5594
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Anna Perkiö, Barun Pradhan, Fatih Genc, Anna Pirttikoski, Sanna Pikkusaari, Erdogan Pekcan Erkan, Matias Marin Falco, Kaisa Huhtinen, Sara Narva, Johanna Hynninen, Liisa Kauppi, Anna Vähärautio
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Scientific Reports, Edición 14, 2024, ISSN 2045-2322
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Nature Publishing Group
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Susanna Holmström, Sampsa Hautaniemi, Antti Häkkinen
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Bioinformatics, 2022, ISSN 1460-2059
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Oxford University Press
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Farzaneh Firoozbakht, Behnam Yousefi, Benno Schwikowski
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Briefings in Bioinformatics, Edición 23:1, 2022, ISSN 1477-4054
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Oxford, United Kingdom
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Molecular Systems Biology, Edición 18, 2022, ISSN 1744-4292
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Nature Publishing Group
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Cancer Immunol Res, Edición 12(1), 2024, Página(s) 48-59, ISSN 2326-6074
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Laboratory Investigation, 2022, ISSN 1530-0307
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Nature Publishing Group
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10.1038/s41374-022-00743-5
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Mischan Vali-Pour, Ben Lehner, Fran Supek
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Nature Communications, Edición 13, 2022, Página(s) 3724, ISSN 2041-1723
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Nature Publishing Group
DOI:
10.1038/s41467-022-31483-1
Autores:
Mai T.N. Nguyen, Anna Rajavuori, Kaisa Huhtinen, Sakari Hietanen, Johanna Hynninen, Jaana Oikkonen, Sampsa Hautaniemi
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Biomedicine & Pharmacotherapy, Edición 168, 2023, ISSN 1950-6007
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Elsevier B.V
DOI:
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Neurocomputing, Edición 488, 2022, Página(s) 494-508, ISSN 0925-2312
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Elsevier BV
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10.1016/j.neucom.2021.11.094
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Cancers, Edición 14(17), 2022, ISSN 2072-6694
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Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
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PLOS ONE, Edición 19, 2024, Página(s) e0289699, ISSN 1932-6203
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Public Library of Science
DOI:
10.1371/journal.pone.0289699
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Tiffany M. Delhomme, Maia Munteanu, Manuela Buonanno, Veljko Grilj, Josep Biayna & Fran Supek
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Scientific Reports, Edición 13(9791), 2023, ISSN 2045-2322
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Nature Publishing Group
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10.1038/s41598-023-36845-3
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Gianpaolo Bontempo; Federico Bolelli; Angelo Porrello; Simone Calderara; Elisa Ficarra
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IEEE Transaction on medical imging, 2023, ISSN 0278-0062
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DOI:
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BMC Cancer, Edición 24:173, 2024, ISSN 1471-2407
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Publicado en:
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Publicado en:
STAR Protocols, Edición 4(4), 2023, ISSN 2666-1667
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BMC Biology, Edición 21(92), 2023, ISSN 1741-7007
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BMC Bioinformatics, Edición 24, 2023, ISSN 1471-2105
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BMC Bioinformatics, Edición 23(295), 2022, ISSN 1471-2105
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Editor:
Springer Publishing Company
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Autores:
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Editor:
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DOI:
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Autores:
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Lecture Notes in Computer Science, Edición 14220, 2023, Página(s) 248-258, ISSN 1611-3349
Editor:
Springer
DOI:
10.1007/978-3-031-43907-0_24
Autores:
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Publicado en:
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Editor:
Springer
DOI:
10.1007/978-3-031-43153-1_1
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