Unified computational solutions to disentangle biological interactions in multi-omics data

Project Information

FindingPheno

Grant agreement ID: 952914

DOI 10.3030/952914

EC signature date 2 December 2020

Start date 1 March 2021

End date 28 February 2025

Funded under

• INDUSTRIAL LEADERSHIP - Leadership in enabling and industrial technologies – Biotechnology

Total cost € 5 793 085,00

EU contribution € 5 793 085,00

Coordinated by

KOBENHAVNS UNIVERSITET
Denmark

Deliverables

Documents, reports (8)

Analysis of host-microbiome dynamics in gut microenvironment
Second Report on dissemination, training and networking activities in FindingPheno

Report on dissemination, training and networking activities in FindingPheno

Report on dissemination, training and networking activities in FindingPheno

Report on dissemination training and networking activities in FindingPheno

Plenary kick-off meeting, including minutes

Plenary kickoff meeting including minutes

PDER agreed (updated annually or when needed)

PDER agreed updated annually or when needed

Summary on challenges in curating public data to apply FindingPheno's solutions

Summary on challenges in curating public data to apply FindingPheno’s solutions

Knowledge resources for chicken, salmon and maize

Knowledge resources for chicken salmon and maize

Stakeholder Synergy Meeting

Websites, patent fillings, videos etc. (2)

Visual identity and project website for FindingPheno released
Dynamic model for multi-omic host-microbiome interactions

Publications

Peer reviewed articles (5)

A strategic model of a host–microbe–microbe system reveals the importance of a joint host–microbe immune response to combat stress-induced gut dysbiosis

Author(s): István Scheuring, Jacob A, Rasmussen, Davide Bozzi, Morten T Limborg
Published in: Frontiers in Microbiology, Issue 1664302X, 2022, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2022.912806

The Evolution of Microbial Facilitation: Sociogenesis, Symbiogenesis, and Transition in Individuality

Author(s): István Zachár, Gergely Boza
Published in: Frontiers in Ecology and Evolution, Issue 2296701X, 2022, ISSN 2296-701X
Publisher: Frontiers Media
DOI: 10.3389/fevo.2022.798045

Dealing with dimensionality: the application of machine learning to multi-omics data

Author(s): Dylan Feldner-Busztin ,Panos Firbas Nisantzis,Shelley Jane Edmunds ,Gergely Boza ,Fernando Racimo,Shyam Gopalakrishnan,Morten Tønsberg Limborg,Leo Lahti,Gonzalo G. de Polavieja
Published in: Bioinformatics, Issue Volume 39, Issue 2, February 2023, 2023, ISSN 1367-4811
Publisher: Oxford Press
DOI: 10.1093/bioinformatics/btad021

Quantifying the impact of ecological memory on the dynamics of interacting communities

Author(s): Moein Khalighi; Didier Gonze; Karoline Faust; Guilhem Sommeria-Klein; Leo Lahti
Published in: PLOS Computational Biology, Issue 1553734X, 2022, Page(s) e1009396, ISSN 1553-734X
Publisher: Public Library of Science
DOI: 10.1371/journal.pcbi.1009396

Eco-evolutionary modelling of microbial syntrophy indicates the robustness of cross-feeding over cross-facilitation

Author(s): Gergely Boza, György Barabás, István Scheuring, István Zachar
Published in: Scientific Reports, Issue 2022 January 17. Volume 13, 2022, Page(s) 1-15, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-023-27421-w