Real-time analysis of ribosomal frameshifting and its impact on immunity and disease

Publicaciones

Mouse Liver-Expressed Shiftless Is an Evolutionarily Conserved Antiviral Effector Restricting Human and Murine Hepaciviruses

Autores: Yudi Zhang, Volker Kinast, Julie Sheldon, Nicola Frericks, Daniel Todt, Matthias Zimmer, Neva Caliskan, Richard J. P. Brown, Eike Steinmann, Thomas Pietschmann
Publicado en: Microbiology Spectrum, 2023, ISSN 2165-0497
Editor: ASM Journal
DOI: 10.1128/spectrum.01284-23

Structural and molecular basis for Cardiovirus 2A protein as a viral gene expression switch

Autores: Hill, C. H.; Pekarek, L.; Napthine, S.; Kibe, A.; Firth, A. E.; Graham, S. C.; Caliskan, N.; Brierley, I.
Publicado en: Nature Communications, Edición 20411723, 2021, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-021-27400-7

Thinking Outside the Frame: Impacting Genomes Capacity by Programmed Ribosomal Frameshifting

Autores: Riegger, R. J.; Caliskan, N.
Publicado en: Frontiers in Molecular Biosciences, Edición 2296889X, 2022, ISSN 2296-889X
Editor: Frontiers Media S.A.
DOI: 10.3389/fmolb.2022.84226

The short isoform of the host antiviral protein ZAP acts as an inhibitor of SARS-CoV-2 programmed ribosomal frameshifting

Autores: Zimmer, M. M.; Kibe, A.; Rand, U.; Pekarek, L.; Ye, L.; Buck, S.; Smyth, R. P.; Cicin-Sain, L.; Caliskan N.
Publicado en: Nature Communications, Edición 20411723, 2021, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-021-27431-0

Insights from structural studies of the cardiovirus 2A protein

Autores: Caliskan, N.; Hill, C. H.
Publicado en: Bioscience Reports, Edición 01448463, 2022, ISSN 0144-8463
Editor: Kluwer Academic Publishers
DOI: 10.1042/bsr20210406

Short- and long-range interactions in the HIV-1 5′ UTR regulate genome dimerization and packaging

Autores: Liqing Ye, Anne-Sophie Gribling-Burrer, Patrick Bohn, Anuja Kibe, Charlene Börtlein, Uddhav B. Ambi, Shazeb Ahmad, Marco Olguin-Nava, Maureen Smith, Neva Caliskan, Max von Kleist & Redmond P. Smyth
Publicado en: Nature Structural and Molecular Biology, 2022, ISSN 1545-9985
Editor: Nature
DOI: 10.1038/s41594-022-00746-2

Investigating molecular mechanisms of 2A-stimulated ribosomal pausing and frameshifting in Theilovirus

Autores: Chris H. Hill; Georgia M. Cook; Sawsan Napthine; Anuja Kibe; Katherine A. Brown; Neva Caliskan; Andrew E. Firth; Stephen C. Graham; Ian Brierley
Publicado en: Nucleic Acid Research, Edición 03051048, 2021, ISSN 0305-1048
Editor: Oxford University Press
DOI: 10.1101/2020.08.11.245068

Cis-mediated interactions of the SARS-CoV-2 frameshift RNA alter its conformations and affect function

Autores: Lukas Pekarek, Matthias M Zimmer, Anne-Sophie Gribling-Burrer, Stefan Buck, Redmond Smyth, Neva Caliskan
Publicado en: Nucleic Acids Research, 2023, Página(s) 728-743, ISSN 0305-1048
Editor: Oxford University Press
DOI: 10.1093/nar/gkac1184

Optical Tweezers to Study RNA-Protein Interactions in Translation Regulation

Autores: Pekarek, L.; Buck, S.; Caliskan, N.
Publicado en: Journal of Visualized Experiments, Edición 1940087X, 2022, ISSN 1940-087X
Editor: MYJoVE Corporation
DOI: 10.3791/62589

POTATO: Automated pipeline for batch analysis of optical tweezers data

Autores: Stefan Buck, Lukas Pekarek, Neva Caliskan
Publicado en: Biophysical Journal, 2022, ISSN 0006-3495
Editor: Biophysical Society
DOI: 10.1016/j.bpj.2022.06.030

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