Deliverables
A unified approach to modelling population structures
Completion of the research programme for Work Package 2The research in this work package will lead to one deliverable, which we break down into four components (labelled D2.1-D2.4 below): D2.1: Two-strategy symmetric games D2.2: Multi-strategy symmetric games D2.3: Asymmetric time constraints in symmetric games D2.4: Time constraints in complex ecosystems
4th annual workshop and annual reportThe year 4 annual workshop, associated training activities and annual report(workshop in month 43*/ report completed by month 46).
Completion of the research programme for Work Package 3The research in this work package will lead to one deliverable, which we break down into three components (labelled D3.1-D3.3 below): D3.1 Algorithms for the extraction of salient features in networks-of-traces, data segmentation for data reduction and visualization and alignment of epidemic traces for discovering relationships. D3.2.Analytical methods to identify unknown dependencies across the input parameters and output variables spanning the different layers of the data. D3.3. Visualization tool-enabling analysis, exploration, and visualization of large epidemic simulations
Integrated interactionsA unified approach to modelling interaction mechanisms
3rd annual workshop and annual reportThe year 3 annual workshop, associated training activities and annual report(workshop in month 31*/report completed by Month 34).
Completion of the research programme for Work Package 4The research in this work package will lead to one deliverable, which we break down into four components (labelled D4.1-D4.6 below): D4.1: Group effects model with optimal control extension for therapy D4.2: Model of tumour heterogeneity, diversification of cancer cells, and therapy in response to spatial heterogeneity in distance to blood vessels D4.3: Modelling multiple treatments within heterogeneous tumours D4.4: Adaptive therapy by treating communities of tumour cells D4.5: Integration with other work plan D4.6: Model validation
1st annual workshop and annual reportThe year 1 annual workshop, associated training activities and annual report (workshop in month 7*/report completed by month 10).
2nd annual workshop and annual reportThe year 2 annual workshop, associated training activities and annual report (workshop in month 19*/report completed by month 22).
Completion of the research programme for Work Package 1The research in this work package will lead to one deliverable, which we break down into six components (labelled D1.1-D1.6 below): D1.1: Independence properties of the framework D1.2: Classification and study of the evolutionary dynamics D1.3: Developing approximation methods for large complex structures D1.4: Incorporating strategic movements D1.5: Analysing framework applicability and robustness D1.6: Incorporating realistic models
Publications
Author(s):
D. Timothy Bishop, Mark Broom, Richard Southwell
Published in:
Dynamic Games and Applications, Issue 10/3, 2020, Page(s) 591-617, ISSN 2153-0785
Publisher:
Springer Science + Business Media
DOI:
10.1007/s13235-019-00343-x
Author(s):
Tamás Varga, József Garay, Jan Rychtář, Mark Broom
Published in:
Theoretical Population Biology, Issue 134, 2020, Page(s) 15-35, ISSN 0040-5809
Publisher:
Academic Press
DOI:
10.1016/j.tpb.2020.03.005
Author(s):
Mark Broom, Igor V. Erovenko, Jan Rychtář
Published in:
Dynamic Games and Applications, 2020, ISSN 2153-0785
Publisher:
Springer Science + Business Media
DOI:
10.1007/s13235-020-00358-9
Author(s):
Garay,J; Cressman,R; Xu,F; Broom,M; Csiszár,V, Móri,TF.
Published in:
Journal of Theoretical Biology, 2020, ISSN 0022-5193
Publisher:
Academic Press
DOI:
10.1016/j.jtbi.2020.110306
Author(s):
Chris Cannings, Mark Broom
Published in:
Journal of Dynamics & Games, Issue 7/1, 2020, Page(s) 37-64, ISSN 2164-6074
Publisher:
American Institute of Mathematical Sciences
DOI:
10.3934/jdg.2020003
Author(s):
Křivan, Vlastimil
Published in:
Pokroky matematiky, fyziky a astronomie, Issue 62/3, 2017, Page(s) 185-201, ISSN 0032-2423
Publisher:
Jednota českých matematiků a fyziků
Author(s):
Li You, Joel S. Brown, Frank Thuijsman, Jessica J. Cunningham, Robert A. Gatenby, Jingsong Zhang, Kateřina Staňková
Published in:
Journal of Theoretical Biology, Issue 435, 2017, Page(s) 78-97, ISSN 0022-5193
Publisher:
Academic Press
DOI:
10.1016/j.jtbi.2017.08.022
Author(s):
Joel S Brown, Kateřina Staňková
Published in:
Current Opinion in Insect Science, Issue 21, 2017, Page(s) 26-32, ISSN 2214-5745
Publisher:
Elsevier BV
DOI:
10.1016/j.cois.2017.05.007
Author(s):
Tomás A. Revilla, Vlastimil Křivan
Published in:
Journal of Theoretical Biology, Issue 440, 2018, Page(s) 42-57, ISSN 0022-5193
Publisher:
Academic Press
DOI:
10.1016/j.jtbi.2017.12.019
Author(s):
Ross Cressman, Abdel Halloway, Gordon G. McNickle, Joe Apaloo, Joel S. Brown, Thomas L. Vincent
Published in:
Theoretical Population Biology, Issue 116, 2017, Page(s) 1-17, ISSN 0040-5809
Publisher:
Academic Press
DOI:
10.1016/j.tpb.2017.04.003
Author(s):
Christoforos Hadjichrysanthou, Mark Broom, Jan Rychtář
Published in:
Journal of Mathematical Biology, 2017, ISSN 0303-6812
Publisher:
Springer Verlag
DOI:
10.1007/s00285-017-1177-7
Author(s):
Chris Cannings, Mark Broom
Published in:
Journal of Dynamics and Games, Issue 4/4, 2017, Page(s) 285-318, ISSN 2164-6066
Publisher:
American Institute of Mathematical Sciences
DOI:
10.3934/jdg.2017016
Author(s):
Robert Spencer, Mark Broom
Published in:
Behavioral Ecology, Issue 29/1, 2017, Page(s) 60-78, ISSN 1045-2249
Publisher:
Oxford University Press
DOI:
10.1093/beheco/arx125
Author(s):
Sicong Liu, Silvestro Poccia, K. Selçuk Candan, Gerardo Chowell, Maria Luisa Sapino
Published in:
Journal of Infectious Diseases, Issue 214/suppl 4, 2016, Page(s) S427-S432, ISSN 0022-1899
Publisher:
University of Chicago Press
DOI:
10.1093/infdis/jiw305
Author(s):
Jingsong Zhang, Jessica J. Cunningham, Joel S. Brown, Robert A. Gatenby
Published in:
Nature Communications, Issue 8/1, 2017, ISSN 2041-1723
Publisher:
Nature Publishing Group
DOI:
10.1038/s41467-017-01968-5
Author(s):
Tomás A. Revilla, Vlastimil Křivan
Published in:
PLOS ONE, Issue 11/8, 2016, Page(s) e0160076, ISSN 1932-6203
Publisher:
Public Library of Science
DOI:
10.1371/journal.pone.0160076
Author(s):
József Garay, Ross Cressman, Tamás F. Móri, Tamás Varga
Published in:
Journal of Mathematical Biology, 2018, ISSN 0303-6812
Publisher:
Springer Verlag
DOI:
10.1007/s00285-018-1207-0
Author(s):
Mark Broom, Jan Rychtář
Published in:
Dynamic Games and Applications, Issue 27 Sep 2016, 2016, ISSN 2153-0785
Publisher:
Springer Science + Business Media
DOI:
10.1007/s13235-016-0204-4
Author(s):
Péter Bayer, Joel S. Brown, Kateřina Staňková
Published in:
Journal of Theoretical Biology, Issue 455, 2018, Page(s) 191-204, ISSN 0022-5193
Publisher:
Academic Press
DOI:
10.1016/j.jtbi.2018.07.014
Author(s):
Jessica J. Cunningham, Joel S. Brown, Robert A. Gatenby, Kateřina Staňková
Published in:
Journal of Theoretical Biology, Issue 459, 2018, Page(s) 67-78, ISSN 0022-5193
Publisher:
Academic Press
DOI:
10.1016/j.jtbi.2018.09.022
Author(s):
Karan Pattni, Mark Broom, Jan Rychtář
Published in:
Discrete & Continuous Dynamical Systems - B, Issue 23/5, 2018, Page(s) 1997-2026, ISSN 1553-524X
Publisher:
American Institute of Mathematical Sciences
DOI:
10.3934/dcdsb.2018191
Author(s):
Karan Pattni, Mark Broom, Jan Rychtář
Published in:
Journal of Theoretical Biology, Issue 429, 2017, Page(s) 105-115, ISSN 0022-5193
Publisher:
Academic Press
DOI:
10.1016/j.jtbi.2017.06.034
Author(s):
Vlastimil Křivan, Theodore E. Galanthay, Ross Cressman
Published in:
Journal of Theoretical Biology, Issue 455, 2018, Page(s) 232-248, ISSN 0022-5193
Publisher:
Academic Press
DOI:
10.1016/j.jtbi.2018.07.003
Author(s):
Vlastimil Křivan, Ross Cressman
Published in:
Journal of Theoretical Biology, Issue 416, 2017, Page(s) 199-207, ISSN 0022-5193
Publisher:
Academic Press
DOI:
10.1016/j.jtbi.2017.01.010
Author(s):
Jozsef Garay, Villo Csiszar, Tamas Mori
Published in:
Journal of Theoretical Biology, Issue Volume 415, 21 February 2017, Pages 1–12, 2017, ISSN 0022-5193
Publisher:
Academic Press
DOI:
10.1016/j.jtbi.2016.11.029
Author(s):
Christopher E. Overton, Mark Broom, Christoforos Hadjichrysanthou, Kieran J. Sharkey
Published in:
Journal of Theoretical Biology, Issue 468, 2019, Page(s) 45-59, ISSN 0022-5193
Publisher:
Academic Press
DOI:
10.1016/j.jtbi.2019.02.009
Author(s):
Mark Broom, Karan Pattni, Jan Rychtář
Published in:
Bulletin of Mathematical Biology, 2018, ISSN 0092-8240
Publisher:
Academic Press
DOI:
10.1007/s11538-018-00545-1
Author(s):
Pedro H. T. Schimit, Karan Pattni, Mark Broom
Published in:
Physical Review E, Issue 99/3, 2019, ISSN 2470-0045
Publisher:
Physical Review
DOI:
10.1103/physreve.99.032306
Author(s):
Mark Broom, Jan Rychtář
Published in:
Dynamic Games and Applications, Issue 26 Dec 2016, 2016, ISSN 2153-0785
Publisher:
Springer Science + Business Media
DOI:
10.1007/s13235-016-0212-4
Author(s):
Joel S. Brown, Jessica J. Cunningham, Robert A. Gatenby
Published in:
IEEE Transactions on Biomedical Engineering, Issue 64/3, 2017, Page(s) 512-518, ISSN 0018-9294
Publisher:
Institute of Electrical and Electronics Engineers
DOI:
10.1109/TBME.2016.2623564
Author(s):
Joel S. Brown
Published in:
Proceedings of the Royal Society B: Biological Sciences, Issue 283/1838, 2016, Page(s) 20160847, ISSN 0962-8452
Publisher:
Royal Society of London
DOI:
10.1098/rspb.2016.0847
Author(s):
Robert A. Gatenby, Jingsong Zhang, Joel S. Brown
Published in:
Cancer Research, Issue 79/13, 2019, Page(s) 3174-3177, ISSN 0008-5472
Publisher:
American Association for Cancer Research
DOI:
10.1158/0008-5472.can-19-0807
Author(s):
Ross Cressman, Vlastimil Křivan
Published in:
Journal of Theoretical Biology, Issue 460, 2019, Page(s) 262-273, ISSN 0022-5193
Publisher:
Academic Press
DOI:
10.1016/j.jtbi.2018.10.033
Author(s):
Li You, Maximilian Knobloch, Teresa Lopez, Vanessa Peschen, Sidney Radcliffe, Praveen Koshy Sam, Frank Thuijsman, Kateřina Staňková, Joel Brown
Published in:
Games, Issue 10/1, 2019, Page(s) 13, ISSN 2073-4336
Publisher:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/g10010013
Author(s):
G. Chowell, K. Mizumoto, J. M. Banda, S. Poccia, C. Perrings
Published in:
Philosophical Transactions of the Royal Society B: Biological Sciences, Issue 374/1775, 2019, Page(s) 20180272, ISSN 0962-8436
Publisher:
Royal Society of London
DOI:
10.1098/rstb.2018.0272
Author(s):
Sicong Liu, Silvestro Roberto Poccia, K. Selçuk Candan, Maria Luisa Sapino, Xiaolan Wang
Published in:
ACM Transactions on Multimedia Computing, Communications, and Applications, Issue 14/1, 2018, Page(s) 1-24, ISSN 1551-6857
Publisher:
Association for Computing Machinary, Inc.
DOI:
10.1145/3152123
Author(s):
Katerina Stanková, Joel S. Brown, William S. Dalton, Robert A. Gatenby
Published in:
JAMA Oncology, Issue 5/1, 2019, Page(s) 96, ISSN 2374-2437
Publisher:
JAMA
DOI:
10.1001/jamaoncol.2018.3395
Author(s):
Mark Broom, Ross Cressman, Vlastimil Křivan
Published in:
Journal of Theoretical Biology, Issue 483, 2019, Page(s) 109993, ISSN 0022-5193
Publisher:
Academic Press
DOI:
10.1016/j.jtbi.2019.109993
Author(s):
Tamás Varga, Tamás F. Móri, József Garay
Published in:
Journal of Mathematical Biology, 2019, ISSN 1432-1416
Publisher:
Springer
DOI:
10.1007/s00285-019-01440-6
Author(s):
Igor V. Erovenko, Johann Bauer, Mark Broom, Karan Pattni, Jan Rychtář
Published in:
Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, Issue 475/2230, 2019, Page(s) 20190399, ISSN 1364-5021
Publisher:
Royal Society of London
DOI:
10.1098/rspa.2019.0399
Author(s):
Mark Broom, Igor V. Erovenko, Jonathan T. Rowell, Jan Rychtář
Published in:
Journal of Theoretical Biology, Issue 484, 2020, Page(s) 110002, ISSN 0022-5193
Publisher:
Academic Press
DOI:
10.1016/j.jtbi.2019.110002
Author(s):
Johann Bauer, Mark Broom, Eduardo Alonso
Published in:
Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, Issue 475/2231, 2019, Page(s) 20190355, ISSN 1364-5021
Publisher:
Royal Society of London
DOI:
10.1098/rspa.2019.0355
Author(s):
Vlastimil Křivan, Tomás A. Revilla
Published in:
Journal of Theoretical Biology, Issue 480, 2019, Page(s) 112-128, ISSN 0022-5193
Publisher:
Academic Press
DOI:
10.1016/j.jtbi.2019.08.003
Author(s):
Giacomo Cavallo, Francesco Di Mauro, Paolo Pasteris, Maria Luisa Sapino, K. Selcuk Candan
Published in:
Journal of Intelligent Information Systems, Issue 53/3, 2019, Page(s) 453-480, ISSN 0925-9902
Publisher:
Kluwer Academic Publishers
DOI:
10.1007/s10844-019-00559-8
Author(s):
Sarah R. Amend, Robert A. Gatenby, Kenneth J. Pienta, Joel S. Brown
Published in:
Current Pathobiology Reports, Issue 6/4, 2018, Page(s) 209-218, ISSN 2167-485X
Publisher:
Springer Nature
DOI:
10.1007/s40139-018-0185-7
Author(s):
Robert A. Gatenby, Yael Artzy-Randrup, Tamir Epstein, Damon R. Reed, Joel S. Brown
Published in:
Cancer Research, Issue 80/3, 2020, Page(s) 613-623, ISSN 0008-5472
Publisher:
American Association for Cancer Research
DOI:
10.1158/0008-5472.can-19-1941
Author(s):
Jeffrey B. West, Mina N. Dinh, Joel S. Brown, Jingsong Zhang, Alexander R. Anderson, Robert A. Gatenby
Published in:
Clinical Cancer Research, Issue 25/14, 2019, Page(s) 4413-4421, ISSN 1078-0432
Publisher:
American Association for Cancer Research
DOI:
10.1158/1078-0432.ccr-19-0006
Author(s):
Ross Cressman, Miklós Koller, M. Barnabás Garay, József Garay
Published in:
Dynamic Games and Applications, 2019, ISSN 2153-0785
Publisher:
Springer Science + Business Media
DOI:
10.1007/s13235-019-00324-0
Author(s):
Kateřina Staňková
Published in:
Nature Ecology & Evolution, Issue 3/3, 2019, Page(s) 336-337, ISSN 2397-334X
Publisher:
Nature
DOI:
10.1038/s41559-018-0785-y
Author(s):
József Garay, Villő Csiszár, Tamás F. Móri
Published in:
Journal of Theoretical Biology, Issue 430, 2017, Page(s) 86-91, ISSN 0022-5193
Publisher:
Academic Press
DOI:
10.1016/j.jtbi.2017.06.031
Author(s):
Aming Li, Mark Broom, Jinming Du, Long Wang
Published in:
Physical Review E, Issue 93/2, 2016, ISSN 2470-0045
Publisher:
American Physical Society
DOI:
10.1103/PhysRevE.93.022407
Author(s):
Ross Cressman, Vlastimil Křivan
Published in:
Journal of Theoretical Biology, Issue 503, 2020, Page(s) 110382, ISSN 0022-5193
Publisher:
Academic Press
DOI:
10.1016/j.jtbi.2020.110382
Author(s):
Mark Broom, Vlastimil Křivan
Published in:
Journal of Theoretical Biology, Issue 506, 2020, Page(s) 110426, ISSN 0022-5193
Publisher:
Academic Press
DOI:
10.1016/j.jtbi.2020.110426
Author(s):
Jung Hyun Kim, Mao-Lin Li, K. Selçuk Candan, Maria Luisa Sapino
Published in:
Proceedings of the 40th International ACM SIGIR Conference on Research and Development in Information Retrieval - SIGIR '17, 2017, Page(s) 525-534, ISBN 9781-450350228
Publisher:
ACM Press
DOI:
10.1145/3077136.3080794
Author(s):
Silvestro Roberto Poccia, Maria Luisa Sapino, Sicong Liu, Xilun Chen, Yash Garg, Shengyu Huang, Jung Hyun Kim, Xinsheng Li, Parth Nagarkar, K. Selcuk Candan
Published in:
Proceedings of the 20th International Conference on Extending Database Technology, {EDBT} 2017, Issue yearly event, 2017, Page(s) 582--585, ISBN 978-3-89318-073-8
Publisher:
OpenProceedings.org
DOI:
10.5441/002/edbt.2017.75
Author(s):
Xinsheng Li, K. Selçuk Candan, Maria Luisa Sapino
Published in:
Proceedings of the 26th International Conference on World Wide Web - WWW '17, Issue yearly publication, 2017, Page(s) 243-252, ISBN 9781-450349130
Publisher:
ACM Press
DOI:
10.1145/3038912.3052641
Author(s):
Yash Garg, Silvestro Roberto Poccia
Published in:
Proceedings of the 2017 ACM on International Conference on Multimedia Retrieval - ICMR '17, 2017, Page(s) 489-493, ISBN 9781-450347013
Publisher:
ACM Press
DOI:
10.1145/3078971.3079009
Author(s):
F. J. Muros, J. M. Maestre, L. You, K. Stankova
Published in:
2017 IEEE 56th Annual Conference on Decision and Control (CDC), 2017, Page(s) 5539-5544, ISBN 978-1-5090-2873-3
Publisher:
IEEE
DOI:
10.1109/CDC.2017.8264481
Author(s):
Ruocheng Guo, Paulo Shakarian
Published in:
2016 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM), Issue 18 Aug 2016, 2016, Page(s) 591-598, ISBN 978-1-5090-2846-7
Publisher:
IEEE
DOI:
10.1109/ASONAM.2016.7752296
Author(s):
Nikhil Kumar, Ruocheng Guo, Ashkan Aleali, Paulo Shakarian
Published in:
2016 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM), Issue 18 Aug 2016, 2016, Page(s) 1329-1336, ISBN 978-1-5090-2846-7
Publisher:
IEEE
DOI:
10.1109/ASONAM.2016.7752408
Author(s):
Rosaria Rossini, Silvestro Poccia, K. Selcuk Candan, Maria Luisa Sapino
Published in:
Proceedings of the 11th International Conference on Management of Digital EcoSystems, 2019, Page(s) 36-43, ISBN 9781-450362382
Publisher:
ACM
DOI:
10.1145/3297662.3365830
Author(s):
Xilun Chen,
K. Selcuk Candan,
Maria Luisa Sapino
Published in:
Proceedings of the Thirty-Second {AAAI} Conference on Artificial Intelligence, 2018, Page(s) 5078--5085
Publisher:
AAAI.org
Author(s):
Xinsheng Li,
Kasim Selcuk Candan,
Maria Luisa Sapino
Published in:
34th {IEEE} International Conference on Data Engineering, {ICDE} 2018, 2018, Page(s) 1144-1155
Publisher:
IEEE
Author(s):
Ross Cressman, Joe Apaloo
Published in:
Handbook of Dynamic Game Theory, 2016, Page(s) 1-50, ISBN 978-3-319-27335-8
Publisher:
Springer International Publishing
DOI:
10.1007/978-3-319-27335-8_6-1
Author(s):
Mark Broom, Vlastimil Křivan
Published in:
Handbook of Dynamic Game Theory, 2016, Page(s) 1-39, ISBN 978-3-319-27335-8
Publisher:
Springer International Publishing
DOI:
10.1007/978-3-319-27335-8_31-1
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