Deliverables
D7.1 Ethical and policy issues in microbiome research and symbiosis monitoring (M24)Report on evidence-based tools for microbiome-oriented self-care and medical decisions aids based on international standards on metagenomics data production and validation, resulting in a Mutual learning protocol to empower early-stage researchers to explore and address ethical and policy issues in microbiome research. EUR
White paper and recommendations on the human microbiome addressing gaps, emerging fields and political prioritiesD4.3 White paper and recommendations on the human microbiome addressing gaps, emerging fields and political priorities, UCC (M36)
Recommendations for responsible research and innovation rules in the field of microbiomeD7.3 Recommendations for responsible research and innovation rules in the field of microbiome EUR (M36)
Report proposing initiatives for unified repositories for processed dataD3.2 Report proposing initiatives for unified repositories for processed data, UNITN (M30)
Consensus opinion paper (submission) on new approaches for intervention studiesD5.3 Consensus opinion paper (submission) on new approaches for intervention studies. UP (M30).
Policies and regulations for self-management toolsD7.2 Policies and regulations for self-management tools. PRI (M36)1) Report on the different policies needed in order to ensure appropriate regulation and control of ethical issues surrounding self-management tools, and 2) Report on the adaptation of ICH and EMA guidelines on pharmacogenomic biomarkers to microbiome-specific aspects and recommendation to the EMA
Report on the Delphi consultation: Questionnaire & analysis of the. consultation answersD5.1 Report on the Delphi consultation: Questionnaire & analysis of the. consultation answers
Consensus opinion paper (submission) on preclinical models for microbiome research with focus on causalityD5.2 Consensus opinion paper (submission) on preclinical models for microbiome research with focus on causality
Report on clinical endpoints metadataD1.2 Report on clinical endpoints metadata, EF-CLIF (M36)
Sustainability plan including toolboxD8.2 Sustainability plan including toolbox (EUFIC, M30)
Communication and dissemination planD81 Communication and dissemination plan EUFIC M6
Report on interoperabilityD2.2 Report on interoperability, INRAE (M36)
Report on the highlights of communication and dissemination efforts with KPI indicatorsD8.3 Report on the highlights of communication and dissemination efforts with KPI indicators (EUFIC, M36)
Report on human microbiome dataD2.1 Report on human microbiome data, UCPH (M24)
Report on recommendations for microbiome analysis standardsD3.1 Report on recommendations for microbiome analysis standards, UCPH (M30)
Roadmap proposal for a European Microbiome-Dedicated Surveillance NetworkD7.4 Roadmap proposal for a European Microbiome-Dedicated Surveillance Network EUR (M36)
Position paper (submission) on biomarker identification, preanalytical & analytical validationD6.2 Position paper (submission) on biomarker identification, preanalytical & analytical validation. LNS (M30)
Publications
Author(s):
Tyc O, Shi Y, Fan YC, Trebicka J, Xiang X
Published in:
Frontiers in Immunology, Issue 2023 Aug 15, 2023, ISSN 1664-3224
Publisher:
Frontiers Media
DOI:
10.3389/fimmu.2023.1260749
Author(s):
Alexander Queck, Louise Schwierz, Wenyi Gu, Philip G. Ferstl, Christian Jansen, Frank E. Uschner, Michael Praktiknjo, Johannes Chang, Maximilian J. Brol, Filippo Schepis, Manuela Merli, Christian P. Strassburg, Jennifer Lehmann, Carsten Meyer, Jonel Trebicka
Published in:
Hepatology, 2022, ISSN 0270-9139
Publisher:
John Wiley & Sons Inc.
DOI:
10.1002/hep.32676
Author(s):
Dore J & Ortega-Ugalde S
Published in:
Frontiers in Astronomy and Space Sciences, Issue 2023 Sept, 2023, ISSN 2296-987X
Publisher:
Frontiers Media
DOI:
10.3389/fspas.2023.1180522
Author(s):
Chandana B. Herath, Peter W. Angus, and Jonel Trebicka
Published in:
Frontiers in Physiology, 2022, ISSN 1664-042X
Publisher:
Frontiers Research Foundation
DOI:
10.3389/fphys.2022.864083
Author(s):
Brol MJ, Drebber U, Yu X, Schierwagen R, Gu W, Plamper A, Klein S, Odenthal M, Uschner FE, Praktiknjo M, Trebicka J, Rheinwalt KP
Published in:
Surgery for Obesity and Related Diseases, Issue 2024, 2024, ISSN 1550-7289
Publisher:
Elsevier BV
DOI:
10.1016/j.soard.2024.02.006
Author(s):
Trebicka J, Hernaez R, Shawcross DL, Gerbes AL
Published in:
Gut, Issue 2024 Mar 25, 2024, ISSN 0017-5749
Publisher:
BMJ Publishing Group
DOI:
10.1136/gutjnl-2023-330584
Author(s):
Soppert, Josefin; Brandt, Elisa Fabiana; Heussen, Nicole Maria; Barzakova, Emona; Blank, Lars M.; Küpfer, Lars; Hornef, Mathias; Trebicka, Jonel; Jankowski, Joachim; Berres, Marie-Luise; Noels, Heidi
Published in:
Clinical Gastroenterology and Hepatology, Issue 7, 2023, Page(s) 2746-2758, ISSN 1542-3565
Publisher:
W. B. Saunders Co., Ltd.
DOI:
10.1016/j.cgh.2022.11.030
Author(s):
Schierwagen, Robert; Gu, Wenyi; Brieger, Angela; Brüne, Bernhard; Ciesek, Sandra; Đikić, Ivan; Dimmeler, Stefanie; Geisslinger, Gerd; Greten, Florian R.; Hermann, Eva; Hildt, Eberhard; Kempf, Volkhard A. J.; Klein, Sabine; Koch, Ina; Mühl, Heiko; Müller, Volker; Peiffer, Kai-Henrik; Kestner, Roxane-Isabelle; Piiper, Albrecht; Rohde, Gernot; Scholich, Klaus; Schulz, Marcel H.; Storf, Holger; T
Published in:
American journal of physiology. Cell physiology, Issue 8, 2023, ISSN 0363-6143
Publisher:
American Physiological Society
DOI:
10.1152/ajpcell.00101.2023
Author(s):
Kronborg TM, Schierwagen R, Trošt K, Gao Q, Moritz T, Bendtsen F, Gantzel RH, Andersen ML, Teisner AS, Grønbæk H, Hobolth L, Møller S, Trebicka J, Kimer N
Published in:
Hepatology Communications, Issue 2023 Dec 1, 2023, ISSN 2471-254x
Publisher:
Wolters Kluwer Health
DOI:
10.1097/hc9.0000000000000332
Author(s):
Mücke MM, El Bali N, Schwarzkopf KM, Uschner FE, Kraus N, Eberle L, Mücke VT, Bein J, Beyer S, Wild PJ, Schierwagen R, Klein S, Zeuzem S, Welsch C, Trebicka J, Brieger A
Published in:
International Journal of Molecular Sciences, Issue 2024 Jan 26, 2024, ISSN 1422-0067
Publisher:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/ijms25031542
Author(s):
Reiberger, Thomas; Berzigotti, Annalisa; Trebicka, Jonel; Ertle, Judith; Gashaw, Isabella; Swallow, Ros; Tomisser, Andrea
Published in:
Trials, Issue 10, 2023, ISSN 1745-6215
Publisher:
BioMed Central
DOI:
10.1186/s13063-023-07291-3
Author(s):
Markus Kimmann; Jonel Trebicka
Published in:
Journal of Personalized Medicine, Vol 13, Iss 7, p 1052 (2023), Issue 11, 2023, ISSN 2075-4426
Publisher:
MDPI
DOI:
10.3390/jpm13071052
Author(s):
Gu W, Zeleke Y, Hortlik H, Schaaf L, Uschner FE, Schulz M, Tischendorf M, Peiffer KH, Brol MJ, Kimmann M, Vogl T, Köhler M, Meyer C, Gerbes A, Rössle M, Laleman W, Zipprich A, Steib C, Praktiknjo M, Trebicka J; German TIPS Working Group.
Published in:
Hepatology Communications, Issue 2023 Sep 15, 2023, ISSN 2471-254x
Publisher:
Wolters Kluwer Health
DOI:
10.1097/hc9.0000000000000237
Author(s):
Lisa Derosa, Valerio Iebba, Carolina Alves Costa Silva, Gianmarco Piccinno, Guojun Wu, Leonardo Lordello, Bertrand Routy, Naisi Zhao, Cassandra Thelemaque, Marine Fidelle, Meriem Messaoudene, Andrew Maltez Thomas, Gerard Zalcman, Sylvie Friard, Julien Mazieres, Clarisse Audigier-Valette, Denis Moro-Sibilot, François Goldwasser, Arnaud Scherpereel, Hervé Pegliasco, François Ghiringhelli, Nicol
Published in:
Cell, 2024, ISSN 0092-8674
Publisher:
Cell Press
DOI:
10.1016/j.cell.2024.05.029
Author(s):
Carolina Alves Costa Silva, Marine Fidelle, Andrew A. Almonte, Lisa Derosa, Laurence Zitvogel
Published in:
Ann. Rev. Pharmacol, 2024, ISSN 0362-1642
Publisher:
Annual Reviews, Inc.
DOI:
10.1146/annurev-pharmtox-061124-102218
Author(s):
Sandra Torres; Cristina Ortiz; Nadine Bachtler; Wenyi Gu; Leon D. Grünewald; Nico Kraus; Robert Schierwagen; Christoph Hieber; Caroline Meier; Olaf Tyc; Maximilian Joseph Brol; Frank Erhard Uschner; Bart Nijmeijer; Christoph Welsch; Marie‐Luise Berres; Carmen Garcia‐Ruiz; Jose Carlos Fernandez‐Checa; Christian Trautwein; Thomas J. Vogl; Stefan Zeuzem; Jonel Trebicka; Sabine Klein
Published in:
Hepatology, 2022, ISSN 0270-9139
Publisher:
John Wiley & Sons Inc.
DOI:
10.1002/hep.32746
Author(s):
Emmanuel Weiss; Carlos de la Peña-Ramirez; Ferran Aguilar; Juan-Jose Lozano; Cristina Sánchez-Garrido; Patricia Sierra; Pedro Izquierdo-Bueno Martin; Juan Manuel Diaz; François Fenaille; Florence A Castelli; Thierry Gustot; Wim Laleman; Agustín Albillos; Carlo Alessandria; Marco Domenicali; Paolo Caraceni; Salvatore Piano; Faouzi Saliba; Stefan Zeuzem; Alexander L Gerbes; Julia A Wendon; Chris
Published in:
Gut, Issue 6, 2023, Page(s) 1581-1591, ISSN 0017-5749
Publisher:
BMJ Publishing Group
DOI:
10.1136/gutjnl-2022-328708
Author(s):
Gu W, Schaaf L, Hortlik H, Zeleke Y, Brol MJ, Schnitzbauer AA, Bechstein WO, Zeuzem S, Queck A, Peiffer KH, Tischendorf M, Pascher A, Laleman W, Praktiknjo M, Schulz MS, Uschner FE, Rennebaum F, Trebicka J
Published in:
European Journal of Gastroenterology & Hepatology, Issue 2023 Nov 1, 2023, Page(s) 1289-1297, ISSN 0954-691X
Publisher:
Lippincott Williams & Wilkins Ltd.
DOI:
10.1097/meg.0000000000002640
Author(s):
Hub Zwart
Published in:
Endeavour, Issue 46, 2022, Page(s) 100816, ISSN 0160-9327
Publisher:
Elsevier BV
DOI:
10.1016/j.endeavour.2022.100816
Author(s):
Kriaa A, Mariaule V, De Rudder C, Jablaoui A, Sokol H, Wilmes P, Maguin E, Rhimi M.
Published in:
Gut Microbes, Issue 2024 Jan-Dec;16(1):2333434, 2024, ISSN 1949-0984
Publisher:
Taylor and Francis
DOI:
10.1080/19490976.2024.2333434
Author(s):
Paulay A, Grimaud GM, Caballero R, Laroche B, Leclerc M, Labarthe S, Maguin E
Published in:
mSystems, Issue 2024 Apr 16;9(4):e0015324, 2024, ISSN 0021-9193
Publisher:
American Society for Microbiology
DOI:
10.1128/msystems.00153-24
Author(s):
Bachtler, Nadine; Torres, Sandra; Ortiz, Cristina; Schierwagen, Robert; Tyc, Olaf; Hieber, Christoph; Berres, Marie-Luise; Meier, Caroline; Kraus, Nico; Zeuzem, Stefan; Nijmeijer, Bart; Pronk, Sebas; Trebicka, Jonel; Klein, Sabine
Published in:
PLoS ONE, Vol 18, Iss 1, p e0270288 (2023), Issue 7, 2023, ISSN 1932-6203
Publisher:
Public Library of Science
DOI:
10.1371/journal.pone.0270288
Author(s):
Thiele M, Villesen IF, Niu L, Johansen S, Sulek K, Nishijima S, Van Espen L, Keller M, Israelsen M, Suvitaival T, de Zawadzki A, Juel HB, Brol MJ, Stinson SE, Huang Y, Alvarez Silva MC, Kuhn M, Anastasiadou E, Leeming DJ, Karsdal M, Matthijnssens J, Arumugam M, Dalgaard LT, Legido-Quigley C, Mann M, Trebicka J, Bork P, Jensen LJ, Hansen T, Krag A; MicrobLiver and GALAXY consortia; GALAXY consortiu
Published in:
Journal of Hepatology, Issue 2024 Mar 27, 2024, ISSN 0168-8278
Publisher:
Elsevier BV
DOI:
10.1016/j.jhep.2024.03.035
Author(s):
Sauerbruch T, Hennenberg M, Trebicka J, Schierwagen R
Published in:
Frontiers in Medicine, Issue 2023 Jan 9, 2023, ISSN 2296-858X
Publisher:
Frontiers Media
DOI:
10.3389/fmed.2022.1100966
Author(s):
Buch, Stephan; Innes, Hamish; Lutz, Philipp Ludwig; Nischalke, Hans Dieter; Marquardt, Jens U; Fischer, Janett; Weiss, Karl Heinz; Rosendahl, Jonas; Marot, Astrid; Krawczyk, Marcin; Casper, Markus; Lammert, Frank; Eyer, Florian; Vogel, Arndt; Marhenke, Silke; von Felden, Johann; Sharma, Rohini; Atkinson, Stephen Rahul; McQuillin, Andrew; Nattermann, Jacob; Schafmayer, Clemens; Franke, Andre; Stras
Published in:
Gut, Issue 8, 2023, ISSN 0017-5749
Publisher:
BMJ Publishing Group
DOI:
10.1136/gutjnl-2022-327196
Author(s):
Torp N, Israelsen M, Coenraad M, Papp M, Shawcross D, Korenjak M, Angeli P, Laleman W, Juanola A, Gines P, Trebicka J, Krag A; MICROB-PREDICT Consortium.
Published in:
BMJ Open, Issue 2024 Feb 14, 2024, ISSN 2044-6055
Publisher:
BMJ Publishing Group
DOI:
10.1136/bmjopen-2023-079309
Author(s):
Doriane Aguanno, Amira Metwaly, Olivia I. Coleman, Dirk Haller
Published in:
Microbiome Research Reports, 2022, ISSN 2771-5965
Publisher:
OAE Publishing Inc.
DOI:
10.20517/mrr.2022.01
Author(s):
Kennedy KM, de Goffau MC, Perez-Muñoz ME, Arrieta M-C, Bäckhed F, Bork P, Braun T, Bushman FD, Dore J, de Vos WM, Earl AM, Eisen JA, Elovitz MA, Ganal-Vonarburg SC, Gänzle MG, Garrett WS, Hall LJ, Hornef MW, Huttenhower C, Konnikova L, Lebeer S, Macpherson AJ, Massey RC, McHardy AC, Koren O, Lawley TD, Ley RE, O’Mahony L, O’Toole PW, Pamer EG, Parkhill J, Raes J, Rattei T, Salonen A, Segal
Published in:
Nature, Issue 2023 Jan, 2023, Page(s) 639-649, ISSN 0028-0836
Publisher:
Nature Publishing Group
DOI:
10.1038/s41586-022-05546-8
Author(s):
Praktiknjo M, Trebicka J.
Published in:
JHEP Reports, Issue 2024 Feb 9, 2024, ISSN 2589-5559
Publisher:
Elsevier B.V.
DOI:
10.1016/j.jhepr.2024.101034
Author(s):
Ruiz-Margáin A, Pohlmann A, Lanzerath S, Langheinrich M, Campos-Murguía A, Román-Calleja BM, Schierwagen R, Klein S, Uschner FE, Brol MJ, Torre-Delgadillo A, Flores-García NC, Praktiknjo M, Macías Rodríguez RU, Trebicka J
Published in:
JHEP Reports, Issue 2023 Apr 14, 2023, ISSN 2589-5559
Publisher:
Elsevier BV
DOI:
10.1016/j.jhepr.2023.100761
Author(s):
Amira Metwaly, Sandra Reitmeier, Dirk Haller
Published in:
Nature Reviews Gastroentrology & Hepatology, 2022, ISSN 1759-5045
Publisher:
Nature Publishing Group
DOI:
10.1038/s41575-022-00581-2
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