Versatile Emerging infectious disease Observatory

Publicaciones

SARS-CoV-2 and Type 1 Diabetes in Finnish Children

Autores: Knip M, Parviainen A, Turtinen M, But A, Härkönen T, Hepojoki J, Sironen T, Iheozor-Ejiofor R, Uğurlu H, Saksela K, Lempainen J, Ilonen J, Vapalahti O, Register FPD
Publicado en: Social Science Research Network, 2022, ISSN 1556-5068
Editor: Elsevier
DOI: 10.2139/ssrn.4237744

SARS-CoV-2 infections among healthcare workers at Helsinki University Hospital, Finland, spring 2020: Serosurvey, symptoms and risk factors

Autores: Anu Kantele, Tinja Lääveri, Lauri Kareinen, Sari H. Pakkanen, Karin Blomgren, Sointu Mero, Anu Patjas, Jenni Virtanen, Ruut Uusitalo, Maija Lappalainen, Asko Järvinen, Satu Kurkela, Anne J. Jääskeläinen, Olli Vapalahti, Tarja Sironen
Publicado en: Travel Medicine and Infectious Disease, Edición 39, 2021, ISSN 1477-8939
Editor: Elsevier BV
DOI: 10.1016/j.tmaid.2020.101949

Canine Saliva as a Possible Source of Antimicrobial Resistance Genes

Autores: Adrienn Gréta Tóth, Imre Tóth, Bernadett Rózsa, Attila Dubecz, Árpád V. Patai, Tibor Németh, Selçuk Kaplan, Eszter Gabriella Kovács, László Makrai, Norbert Solymosi
Publicado en: Antibiotics, Edición 11/11, 2022, ISSN 2078-2489
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/antibiotics11111490

Impact of antigenic evolution and original antigenic sin on SARS-CoV-2 immunity

Autores: Muriel Aguilar-Bretones, Ron Am Fouchier, Marion Pg Koopmans, Gijsbert P van Nierop
Publicado en: The Journal of Clinical Investigation, Edición 133/1, 2023, ISSN 0021-9738
Editor: American Society for Clinical Investigation
DOI: 10.1172/jci162192

Rise and fall of SARS-CoV-2 variants in Rotterdam: Comparison of wastewater and clinical surveillance

Autores: Ray W Izquierdo-Lara, Leo Heijnen, Bas B Oude Munnink, Claudia M E Schapendonk, Goffe Elsinga, Jeroen Langeveld, Johan Post, Divyae K Prasad, Christian Carrizosa, Frederic Been, Janko van Beek, Remy Schilperoort, Rianne Vriend, Ewout Fanoy, Evelien I T de Schepper, Reina S Sikkema, Richard Molenkamp, Frank M Aarestrup, Gertjan Medema, Marion P G Koopmans and Miranda de Graaf
Publicado en: Science of the Total Environment, Edición 873, 2023, ISSN 0048-9697
Editor: Elsevier BV
DOI: 10.1016/j.scitotenv.2023.162209

Temporal Dynamics, Discovery, and Emergence of Human-Transmissible RNA Viruses

Autores: Lu Lu, Feifei Zhang, Liam Brierley, Gail Robertson, Margo Chase-Topping, Samantha Lycett, Mark Woolhouse
Publicado en: Molecular Biology and Evolution, Edición 41, 2024, ISSN 0737-4038
Editor: Oxford University Press
DOI: 10.1093/molbev/msad272

Case Report: The Carotid Body in COVID-19: Histopathological and Virological Analyses of an Autopsy Case Series

Autores: Andrea Porzionato, Aron Emmi, Martina Contran, Elena Stocco, Silvia Riccetti, Alessandro Sinigaglia, Veronica Macchi, Luisa Barzon and Raffaele De Caro
Publicado en: Frontiers in Immunology, Edición 12, 2021, ISSN 1664-3224
Editor: Frontiers Media SA
DOI: 10.3389/fimmu.2021.736529

Has Epizootic Become Enzootic? Evidence for a Fundamental Change in the Infection Dynamics of Highly Pathogenic Avian Influenza in Europe, 2021

Autores: Anne Pohlmann, Jacqueline King, Alice Fusaro, Bianca Zecchin, Ashley C Banyard, Ian H Brown, Alexander M P Byrne, Nancy Beerens, Yuan Liang, Rene Heutink, Frank Harders, Joe James, Scott M Reid, Rowena D E Hansen, Nicola S Lewis, Charlotte Hjulsager, Lars E Larsen, Siamak Zohari, Kristofer Anderson, Caroline Bröjer, Alexander Nagy, Vladimir Savič, Steven van Borm, Mieke Steensels, Francois-Xavie
Publicado en: mBio, Edición 13/4, 2022, ISSN 2161-2129
Editor: American Society for Microbiology
DOI: 10.1128/mbio.00609-22

One Day in Denmark: Nationwide point-prevalence survey of human bacterial isolates and comparison of classical and whole-genome sequence-based species identification methods

Autores: Ana Rita Rebelo,Tobias Ibfelt, Valeria Bortolaia, Pimlapas Leekitcharoenphon, Dennis Schrøder Hansen, Hans Linde Nielsen, Svend Ellermann-Eriksen, Michael Kemp, Bent Løwe Røder, Niels Frimodt-Møller, Turid Snekloth Søndergaard, John Eugenio Coia, Claus Østergaard, Michael Pedersen, Henrik Westh and Frank Møller Aarestrup
Publicado en: PLOS ONE, 2022, ISSN 1932-6203
Editor: Public Library of Science
DOI: 10.1371/journal.pone.0261999

HAVoC, a bioinformatic pipeline for reference-based consensus assembly and lineage assignment for SARS-CoV-2 sequences

Autores: Phuoc Thien Truong Nguyen, Ilya Plyusnin, Tarja Sironen, Olli Vapalahti, Ravi Kant, Teemu Smura
Publicado en: BMC Bioinformatics, Edición 22/1, 2021, ISSN 1471-2105
Editor: BioMed Central
DOI: 10.1186/s12859-021-04294-2

Iceland: an underestimated hub for the spread of high-pathogenicity avian influenza viruses in the North Atlantic

Autores: Ann Kathrin Ahrens, Stefán Ragnar Jónsson, Vilhjálmur Svansson, Brigitte Brugger, Martin Beer, Timm C. Harder, Anne Pohlmann
Publicado en: Journal of General Virology, Edición 105, 2024, ISSN 0022-1317
Editor: Society for General Microbiology
DOI: 10.1099/jgv.0.001985

SARS-CoV-2 Infection and Disease Modelling Using Stem Cell Technology and Organoids

Autores: Marta Trevisan, Silvia Riccetti, Alessandro Sinigaglia, Luisa Barzon
Publicado en: International Journal of Molecular Sciences, Edición 22/5, 2021, Página(s) 2356, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms22052356

Apis mellifera filamentous virus from a honey bee gut microbiome survey in Hungary

Autores: Márton Papp, Adrienn Gréta Tóth, László Békési, Róbert Farkas, László Makrai, Gergely Maróti, Norbert Solymosi
Publicado en: Scientific Reports, Edición 14, 2024, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-024-56320-x

Leptospira Status in Sweden during the Past Century, Neglected and Re-Emerging?

Autores: Tanja M. Strand, Eva Olsson Engvall, Elina Lahti, Marika Hjertqvist, Åke Lundkvist
Publicado en: Microorganisms, Edición 11, 2023, Página(s) 1991, ISSN 2076-2607
Editor: MDPI
DOI: 10.3390/microorganisms11081991

Hypopharyngeal Ulcers in COVID-19: Histopathological and Virological Analyses – A Case Report

Autores: Andrea Porzionato, Elena Stocco1, Aron Emmi, Martina Contran, Veronica Macchi, Silvia Riccetti, Alessandro Sinigaglia, Luisa Barzon and Raffaele De Caro
Publicado en: Frontiers in Immunology, Edición 12, 2021, ISSN 1664-3224
Editor: Frontiers Media SA
DOI: 10.3389/fimmu.2021.676828

Sindbis virus neutralising antibodies detected in Swedish horses

Autores: Agnes Björnström, Anne-Lie Blomström, Manish Chandra Singh, Jenny C Hesson
Publicado en: One Health, Edición 12, 2021, ISSN 2352-7714
Editor: Elsevier BV
DOI: 10.1016/j.onehlt.2021.100242

Antigenic evolution of SARS coronavirus 2

Autores: Anna Z Mykytyn, Ron AM Fouchier, Bart L Haagmans
Publicado en: Current Opinion in Virology, Edición 62, 2024, Página(s) 101349, ISSN 1879-6257
Editor: Elsevier BV
DOI: 10.1016/j.coviro.2023.101349

West Nile virus spread in Europe: Phylogeographic pattern analysis and key drivers

Autores: Lu Lu, Feifei Zhang, Bas B. Oude Munnink, Emmanuelle Munger, Reina S. Sikkema, Styliani Pappa, Katerina Tsioka, Alessandro Sinigaglia, Emanuela Dal Molin, Barbara B. Shih, Anne Günther, Anne Pohlmann, Ute Ziegler, Martin Beer, Rachel A. Taylor, Frederic Bartumeus, Mark Woolhouse, Frank M. Aarestrup, Luisa Barzon, Anna Papa, Samantha Lycett, Marion P. G. Koopmans
Publicado en: PLOS Pathogens, Edición 20, 2024, Página(s) e1011880, ISSN 1553-7374
Editor: PLOS
DOI: 10.1371/journal.ppat.1011880

An advanced sequence clustering and designation workflow reveals the enzootic maintenance of a dominant West Nile virus subclade in Germany

Autores: Pauline Dianne Santos, Anne Günther, Markus Keller, Timo Homeier-Bachmann, Martin H. Groschup, Martin Beer, Dirk Höper and Ute Ziegler
Publicado en: BioRxiv, 2022, ISSN 2692-8205
Editor: Cold Spring Harbor Laboratory Press
DOI: 10.1101/2022.10.05.509209

A survey on antimicrobial resistance genes of frequently used probiotic bacteria, 1901 to 2022

Autores: Adrienn Gréta Tóth, Maura Fiona Judge, Sára Ágnes Nagy, Márton Papp, Norbert Solymosi
Publicado en: Eurosurveillance, Edición 28, 2023, ISSN 1560-7917
Editor: European Centre for Disease Prevention and Control (ECDC)
DOI: 10.2807/1560-7917.es.2023.28.14.2200272

Monitoring SARS-CoV-2 Circulation and Diversity through Community Wastewater Sequencing, the Netherlands and Belgium

Autores: Ray Izquierdo-Lara, Goffe Elsinga, Leo Heijnen, Bas B. Oude Munnink, Claudia M.E. Schapendonk, David Nieuwenhuijse, Matthijs Kon, Lu Lu, Frank M. Aarestrup, Samantha Lycett, Gertjan Medema, Marion P.G. Koopmans, Miranda de Graaf
Publicado en: Emerging Infectious Diseases, Edición 27/5, 2021, Página(s) 1405-1415, ISSN 1080-6040
Editor: US National Center for Infectious Diseases
DOI: 10.3201/eid2705.204410

Prevalence, Infectious Characteristics and Genetic Diversity of Staphylococcus aureus and Methicillin-Resistant Staphylococcus aureus (MRSA) in Two Raw-Meat Processing Establishments in Northern Greece

Autores: Dimitrios Komodromos, Charalampos Kotzamanidis, Virginia Giantzi, Styliani Pappa, Anna Papa, Antonios Zdragas, Apostolos Angelidis, Daniel Sergelidis
Publicado en: Pathogens, Edición 11/11, 2022, ISSN 2076-0817
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pathogens11111370

Influenza-A mediated pre-existing immunity levels to SARS-CoV-2 could predict early COVID-19 outbreak dynamics

Autores: Nerea Martín Almazán, Afsar Rahbar, Marcus Carlsson, Tove Hoffman, Linda Kolstad, Bengt Rönnberg, Mattia Russel Pantalone, Ilona Lewensohn Fuchs, Anna Nauclér, Mats Ohlin, Mariusz Sacharczuk, Piotr Religa, Stefan Amér, Christian Molnár, Åke Lundkvist, Andres Susrud, Birger Sörensen, Cecilia Söderberg-Nauclér
Publicado en: iScience, Edición 26, 2024, Página(s) 108441, ISSN 2589-0042
Editor: Cell Press
DOI: 10.1016/j.isci.2023.108441

Integrating Global Citizen Science Platforms to Enable Next-Generation Surveillance of Invasive and Vector Mosquitoes

Autores: Ryan M. Carney, Connor Mapes, Russanne D. Low, Alex Long, Anne Bowser, David Durieux, Karlene Rivera, Berj Dekramanjian, Frederic Bartumeus, Daniel Guerrero, Carrie E. Seltzer, Farhat Azam, Sriram Chellappan and John R. B. Palmer
Publicado en: Insects, Edición 13/8, 2022, ISSN 2075-4450
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/insects13080675

Time-series sewage metagenomics distinguishes seasonal, human-derived and environmental microbial communities potentially allowing source-attributed surveillance

Autores: Ágnes Becsei, Alessandro Fuschi, Saria Otani, Ravi Kant, Ilja Weinstein, Patricia Alba, József Stéger, Dávid Visontai, Christian Brinch, Miranda de Graaf, Claudia M. E. Schapendonk, Antonio Battisti, Alessandra De Cesare, Chiara Oliveri, Fulvia Troja, Tarja Sironen, Olli Vapalahti, Frédérique Pasquali, Krisztián Bányai, Magdolna Makó, Péter Pollner, Alessandra Merlotti, Marion Koopmans,
Publicado en: Nature Communications, Edición 15, 2024, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-024-51957-8

Normalisation of SARS-CoV-2 concentrations in wastewater: The use of flow, electrical conductivity and crAssphage

Autores: Jeroen Langeveld, Remy Schilperoort, Leo Heijnen, Goffe Elsinga, Claudia E.M. Schapendonk, Ewout Fanoy, Evelien I.T. de Schepper, Marion P.G. Koopmans, Miranda de Graaf and Gertjan Medema
Publicado en: Science of the Total Environment, Edición 865, 2022, ISSN 0048-9697
Editor: Elsevier BV
DOI: 10.1016/j.scitotenv.2022.161196

Timeliness of online COVID-19 reports from official sources

Autores: Laura Espinosa, Olesia Altunina, and Marcel Salathé
Publicado en: Frontiers in Public Health, Edición 10, 2023, ISSN 2296-2565
Editor: Future Biologics
DOI: 10.3389/fpubh.2022.1027812

Kinetics of Neutralizing Antibodies of COVID-19 Patients Tested Using Clinical D614G, B.1.1.7, and B 1.351 Isolates in Microneutralization Assays

Autores: Jenni Virtanen, Ruut Uusitalo, Essi M. Korhonen, Kirsi Aaltonen, Teemu Smura, Suvi Kuivanen, Sari H. Pakkanen, Sointu Mero, Anu Patjas, Marianna Riekkinen, Anu Kantele, Visa Nurmi, Klaus Hedman, Jussi Hepojoki,Tarja Sironen, Eili Huhtamo and Olli Vapalahti
Publicado en: Viruses, Edición 13/6, 2021, ISSN 1999-4915
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13060996

ClusTRace, a bioinformatic pipeline for analyzing clusters in virus phylogenies

Autores: Ilya Plyusnin1, Phuoc Thien Truong Nguyen, Tarja Sironen, Olli Vapalahti, Teemu Smura and Ravi Kant
Publicado en: BMC Bioinformatics, Edición 23/196, 2022, ISSN 1471-2105
Editor: BioMed Central
DOI: 10.1186/s12859-022-04709-8

Nanobody engineering for SARS-CoV-2 neutralization and detection

Autores: Liina Hannula, Suvi Kuivanen, Jonathan Lasham, Ravi Kant, Lauri Kareinen, Mariia Bogacheva, Tomas Strandin, Tarja Sironen, Vivek Sharma, Petri Saviranta, Anja Kipar, Olli Vapalahti, Juha T. Huiskonen, Ilona Rissanen
Publicado en: BioRxiv, 2022, ISSN 2692-8205
Editor: Cold Spring Harbor Laboratory Press
DOI: 10.1101/2022.09.14.507920

Association of health, nutrition, and socioeconomic variables with global antimicrobial resistance: a modelling study

Autores: Patrick Murigu Kamau Njage, Bram van Bunnik, Patrick Munk, Ana Rita Pinheiro Marques, Frank M Aarestrup
Publicado en: The Lancet Planetary Health, Edición 7, 2023, Página(s) e888-e899, ISSN 2542-5196
Editor: The Lancet
DOI: 10.1016/s2542-5196(23)00213-9

Experimental Infection and Genetic Characterization of Two Different Capripox Virus Isolates in Small Ruminants

Autores: Janika Wolff, Jacqueline King, Tom Moritz, Anne Pohlmann, Donata Hoffmann, Martin Beer, Bernd Hoffmann
Publicado en: Viruses, Edición 12/10, 2020, Página(s) 1098, ISSN 1999-4915
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v12101098

Systematic detection of co-infection and intra-host recombination in more than 2 million global SARS-CoV-2 samples

Autores: Orsolya Anna Pipek, Anna Medgyes-Horváth, József Stéger, Krisztián Papp, Dávid Visontai, Marion Koopmans, David Nieuwenhuijse, Bas B. Oude Munnink, null null, Guy Cochrane, Nadim Rahman, Carla Cummins, David Yu Yuan, Sandeep Selvakumar, Milena Mansurova, Colman O’Cathail, Alexey Sokolov, Ross Thorne, Nathalie Worp, Clara Amid, István Csabai
Publicado en: Nature Communications, Edición 15, 2024, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-023-43391-z

Experimental SARS-CoV-2 Infection of Bank Voles

Autores: Lorenz Ulrich, Anna Michelitsch, Nico Halwe, Kerstin Wernike, Donata Hoffmann, Martin Beer
Publicado en: Emerging Infectious Diseases, Edición 27/4, 2021, Página(s) 1193-1195, ISSN 1080-6040
Editor: US National Center for Infectious Diseases
DOI: 10.3201/eid2704.204945

Phylogenetic Investigation of Norovirus Transmission between Humans and Animals

Autores: Nele Villabruna, Ray W. Izquierdo Lara, Judit Szarvas, Marion P. G. Koopmans, Miranda de Graaf
Publicado en: Viruses, Edición 12/11, 2020, Página(s) 1287, ISSN 1999-4915
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v12111287

Pathogens Detected in Questing Ixodes ricinus Ticks in a Mountainous Area in Greece

Autores: Katerina Tsioka, Anastasios Saratsis, Styliani Pappa, Anna Papa
Publicado en: Pathogens, Edición 13, 2024, Página(s) 449, ISSN 2076-0817
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pathogens13060449

COVID-19 in health-care workers in three hospitals in the south of the Netherlands: a cross-sectional study

Autores: Reina S Sikkema, Suzan D Pas, David F Nieuwenhuijse, Áine O'Toole, Jaco Verweij, Anne van der Linden, Irina Chestakova, Claudia Schapendonk, Mark Pronk, Pascal Lexmond, Theo Bestebroer, Ronald J Overmars, Stefan van Nieuwkoop, Wouter van den Bijllaardt, Robbert G Bentvelsen, Miranda M L van Rijen, Anton G M Buiting, Anne J G van Oudheusden, Bram M Diederen, Anneke M C Bergmans, Annemiek van der E
Publicado en: The Lancet Infectious Diseases, Edición 20/11, 2020, Página(s) 1273-1280, ISSN 1473-3099
Editor: The Lancet Publishing Group
DOI: 10.1016/s1473-3099(20)30527-2

Diagnostic Potential of a Luminex-Based Coronavirus Disease 2019 Suspension Immunoassay (COVID-19 SIA) for the Detection of Antibodies against SARS-CoV-2

Autores: Tove Hoffman, Linda Kolstad, Johanna F. Lindahl, Bo Albinsson, Anders Bergqvist, Bengt Rönnberg and Åke Lundkvist
Publicado en: Viruses, Edición 13/993, 2021, ISSN 1999-4915
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13060993

Red knots in Europe: a dead end host species or a new niche for highly pathogenic avian influenza?

Autores: Jacqueline King, Anne Pohlmann, Andreas Bange, Elisabeth Horn, Bernd Hälterlein, Angele Breithaupt, Anja Globig, Anne Günther, Angie Kelm, Christian Wiedemann, Christian Grund, Karena Haecker, Stefan Garthe, Timm Harder, Martin Beer, Philipp Schwemmer
Publicado en: Journal of General Virology, Edición 105, 2024, ISSN 0022-1317
Editor: Society for General Microbiology
DOI: 10.1099/jgv.0.002003

The genetics of highly pathogenic avian influenza viruses of subtype H5 in Germany, 2006–2020

Autores: Jacqueline King, Timm Harder, Franz J. Conraths, Martin Beer, Anne Pohlmann
Publicado en: Transboundary and Emerging Diseases, Edición 68/3, 2021, Página(s) 1136-1150, ISSN 1865-1674
Editor: Blackwell-Wiss.-Verl
DOI: 10.1111/tbed.13843

Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance

Autores: Patrick Munk, Christian Brinch, Frederik Duus Møller, Thomas N. Petersen, Rene S. Hendriksen, Anne Mette Seyfarth, Jette S. Kjeldgaard, Christina Aaby Svendsen, Bram van Bunnik, Fanny Berglund, null null, Artan Bego, Pablo Power, Catherine Rees, Dionisia Lambrinidis, Elizabeth Heather Jakobsen Neilson, Karen Gibb, Kris Coventry, Peter Collignon, Susan Cassar, Franz Allerberger, Anowara Begum, Zen
Publicado en: Nature Communications, Edición 13, 2023, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-022-34312-7

Human Virus Genomes Are Enriched in Conserved Adenine/Thymine/Uracil Multiple Tracts That Pause Polymerase Progression

Autores: Emanuela Ruggiero, Enrico Lavezzo, Marco Grazioli, Irene Zanin, Maja Marušič, Janez Plavec, Sara N. Richter and Stefano Toppo
Publicado en: Frontiers in Microbiology, Edición 13, 2022, ISSN 1664-302X
Editor: Frontiers Media
DOI: 10.3389/fmicb.2022.915069

Human West Nile Virus Lineage 2 Infection: Epidemiological, Clinical, and Virological Findings

Autores: Monia Pacenti, Alessandro Sinigaglia, Elisa Franchin, Silvana Pagni, Enrico Lavezzo, Fabrizio Montarsi, Gioia Capelli, Luisa Barzon
Publicado en: Viruses, Edición 12/4, 2020, Página(s) 458, ISSN 1999-4915
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v12040458

Suppression of a SARS-CoV-2 outbreak in the Italian municipality of Vo’

Autores: Enrico Lavezzo, Elisa Franchin, Constanze Ciavarella, Gina Cuomo-Dannenburg, Luisa Barzon, Claudia Del Vecchio, Lucia Rossi, Riccardo Manganelli, Arianna Loregian, Nicolò Navarin, Davide Abate, Manuela Sciro, Stefano Merigliano, Ettore De Canale, Maria Cristina Vanuzzo, Valeria Besutti, Francesca Saluzzo, Francesco Onelia, Monia Pacenti, Saverio G. Parisi, Giovanni Carretta, Daniele Donato, Lucia
Publicado en: Nature, Edición 584/7821, 2020, Página(s) 425-429, ISSN 0028-0836
Editor: Nature Publishing Group
DOI: 10.1038/s41586-020-2488-1

Filling the gaps in the global prevalence map of clinical antimicrobial resistance

Autores: Rik Oldenkamp, Constance Schultsz, Emiliano Mancini, Antonio Cappuccio
Publicado en: Proceedings of the National Academy of Sciences, Edición 118/1, 2020, Página(s) e2013515118, ISSN 0027-8424
Editor: National Academy of Sciences
DOI: 10.1073/pnas.2013515118

Next-generation diagnostics: virus capture facilitates a sensitive viral diagnosis for epizootic and zoonotic pathogens including SARS-CoV-2

Autores: Claudia Wylezich, Sten Calvelage, Kore Schlottau, Ute Ziegler, Anne Pohlmann, Dirk Höper, Martin Beer
Publicado en: Microbiome, Edición 9/1, 2021, ISSN 2049-2618
Editor: BMC
DOI: 10.1186/s40168-020-00973-z

Targeting the NS2B-NS3 protease of tick-borne encephalitis virus withpan-flaviviral protease inhibitors

Autores: Dario Akaberi, Amanda Båhlström, Praveen K. Chinthakindi, Tomas Nyman, Anja Sandström, Josef D. Järhult, Navaneethan Palanisamy, Åke Lundkvist and Johan Lennerstrand
Publicado en: Antiviral Research, Edición 190, 2021, ISSN 0166-3542
Editor: Elsevier BV
DOI: 10.1016/j.antiviral.2021.105074

SARS-CoV-2 spike D614G change enhances replication and transmission

Autores: Bin Zhou, Tran Thi Nhu Thao, Donata Hoffmann, Adriano Taddeo, Nadine Ebert, Fabien Labroussaa, Anne Pohlmann, Jacqueline King, Silvio Steiner, Jenna N. Kelly, Jasmine Portmann, Nico Joel Halwe, Lorenz Ulrich, Bettina Salome Trüeb, Xiaoyu Fan, Bernd Hoffmann, Li Wang, Lisa Thomann, Xudong Lin, Hanspeter Stalder, Berta Pozzi, Simone de Brot, Nannan Jiang, Dan Cui, Jaber Hossain, Malania M. Wilson,
Publicado en: Nature, Edición 592/7852, 2021, Página(s) 122-127, ISSN 0028-0836
Editor: Nature Publishing Group
DOI: 10.1038/s41586-021-03361-1

Co‐infections: Simultaneous detections of West Nile virus and Usutu virus in birds from Germany

Autores: Pauline Dianne Santos, Friederike Michel, Claudia Wylezich, Dirk Höper, Markus Keller, Cora M. Holicki, Claudia A. Szentiks, Martin Eiden, Aemero Muluneh, Antonie Neubauer‐Juric, Sabine Thalheim, Anja Globig, Martin Beer, Martin H. Groschup, Ute Ziegler
Publicado en: Transboundary and Emerging Diseases, 2021, ISSN 1865-1674
Editor: Blackwell-Wiss.-Verl
DOI: 10.1111/tbed.14050

Neutralising reactivity against SARS-CoV-2 Delta and Omicron variants by vaccination and infection history

Autores: Enrico Lavezzo, Monia Pacenti, Laura Manuto, Caterina Boldrin, Margherita Cattai, Marco Grazioli, Federico Bianca, Margherita Sartori, Federico Caldart, Gioele Castelli, Michele Nicoletti, Eleonora Nieddu, Elisa Salvadoretti, Beatrice Labella, Ludovico Fava, Maria Cristina Vanuzzo, Vittoria Lisi, Maria Antonello, Carmela Ileana Grimaldi, Chiara Zulian, Claudia Del Vecchio, Mario Plebani, Andrea Pa
Publicado en: Genome Medicine, Edición 14/61, 2022, ISSN 1756-994X
Editor: BioMed Central
DOI: 10.1186/s13073-022-01066-2

Highly pathogenic avian influenza virus incursions of subtype H5N8, H5N5, H5N1, H5N4, and H5N3 in Germany during 2020-21

Autores: Jacqueline King, Timm Harder, Anja Globig, Lina Stacker, Anne Günther, Christian Grund, Martin Beer, Anne Pohlmann
Publicado en: Virus Evolution, Edición 8/1, 2022, ISSN 2057-1577
Editor: Oxford University Press
DOI: 10.1093/ve/veac035

The next phase of SARS-CoV-2 surveillance: real-time molecular epidemiology

Autores: Bas B Oude Munnink, Nathalie Worp, David F Nieuwenhuijse, Reina S Sikkema, Bart Haagmans, Ron A M Fouchier, Marion Koopmans
Publicado en: Nature Medicine, Edición 27/9, 2021, ISSN 1078-8956
Editor: Nature Publishing Group
DOI: 10.1038/s41591-021-01472-w

Nephropathia Epidemica Caused by Puumala Virus in Bank Voles, Scania, Southern Sweden

Autores: Jiaxin Ling, Elin Economou Lundeberg, Anishia Wasberg, Inês R. Faria, Sanja Vucicevic, Bo Settergren, Åke Lundkvist
Publicado en: Emerging Infectious Diseases, Edición 30, 2024, ISSN 1080-6040
Editor: US National Center for Infectious Diseases
DOI: 10.3201/eid3004.231414

Deep learning identification for citizen science surveillance of tiger mosquitoes

Autores: Balint Armin Pataki, Joan Garriga, Roger Eritja, John R. B. Palmer, Frederic Bartumeus, Istvan Csabai
Publicado en: Scientific Reports, Edición 11/1, 2021, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-021-83657-4

West Nile fever upsurge in a Greek regional unit, 2020

Autores: Anna Papa, Katerina Tsioka, Sandra Gewehr, Stella Kalaitzopouou, Danai Pervanidou, Anna Vakali, Chrysovalantou Kefaloudi, Styliani Pappa, Xanthoula Louka, Spiros Mourelatos
Publicado en: Acta Tropica, Edición 221, 2021, Página(s) 106010, ISSN 0001-706X
Editor: Elsevier BV
DOI: 10.1016/j.actatropica.2021.106010

Vector competence of Swedish Culex pipiens mosquitoes for Japanese encephalitis virus

Autores: Janina Krambrich, Dario Akaberi, Johanna F. Lindahl, Åke Lundkvist, Jenny C. Hesson
Publicado en: Parasites & Vectors, Edición 17, 2024, ISSN 1756-3305
Editor: BioMed Central
DOI: 10.1186/s13071-024-06269-7

Transatlantic spread of highly pathogenic avian influenza H5N1 by wild birds from Europe to North America in 2021

Autores: V. Caliendo; N. S. Lewis; A. Pohlmann; S.R. Baillie; A.C. Banyard; M. Beer; I.H. Brown; R.A.M. Fouchier; R.D.E. Hansen; T.K. Lameris; A.S. Lang; S. Laurendeau; O. Lung; G. Robertson; H. van der Jeugd; T.N. Alkie; K. Thorup; M.L. van Toor; J. Waldenström; C. Yason; T. Kuiken; Y. Berhane
Publicado en: Scientific Reports, Edición 45, 2022, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1101/2022.01.13.476155

A 10-Minute “Mix and Read” Antibody Assay for SARS-CoV-2

Autores: Juuso Rusanen, Lauri Kareinen, Lev Levanov, Sointu Mero, Sari H. Pakkanen, Anu Kantele, Fatima Amanat, Florian Krammer, Klaus Hedman, Olli Vapalahti and Jussi Hepojoki
Publicado en: Viruses, Edición 13/2, 2021, ISSN 1999-4915
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13020143

Introduction and Rapid Spread of SARS-CoV-2 Omicron Variant and Dynamics of BA.1 and BA.1.1 Sublineages, Finland, December 2021

Autores: Hanna Vauhkonen, Phuoc Truong Nguyen, Ravi Kant, Ilja Plyusnin, Mert Erdin, Satu Kurkela, Hanna Liimatainen, Niina Ikonen, Soile Blomqvist, Kirsi Liitsola, Erika Lindh, Otto Helve, Hanna Jarva, Raisa Loginov, Aino Palva, Tiina Hannunen, Sari Hannula, Mikko Parry, Paula Kauppi, Antti Vaheri, Tarja Sironen, Maija Lappalainen, Carita Savolainen-Kopra, Teemu Smura, Olli Vapalahti
Publicado en: Emerging Infectious Diseases, Edición 28/6, 2022, ISSN 1080-6040
Editor: US National Center for Infectious Diseases
DOI: 10.3201/eid2806.220515

Common Laboratory Mice Are Susceptible to Infection with the SARS-CoV-2 Beta Variant

Autores: Ravi Kant, Lauri Kareinen, Teemu Smura, Tobias L. Freitag, Sawan Kumar Jha, Kari Alitalo, Seppo Meri, Tarja Sironen, Kalle Saksela, Tomas Strandin, Anja Kipar and Olli Vapalahti
Publicado en: Viruses, Edición 13/11, 2021, ISSN 1999-4915
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13112263

Evaluation of Production Lots of a Rapid Point-of-Care Lateral Flow Serological Test Intended for Identification of IgM and IgG against the N-Terminal Part of the Spike Protein (S1) of SARS-CoV-2

Autores: Tove Hoffman, Linda Kolstad, Bengt Rönnberg and Åke Lundkvist
Publicado en: Viruses, Edición 13/6, 2021, ISSN 1999-4915
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13061043

Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands

Autores: Bas B. Oude Munnink, David F. Nieuwenhuijse, Mart Stein, Áine O’Toole, Manon Haverkate, Madelief Mollers, Sandra K. Kamga, Claudia Schapendonk, Mark Pronk, Pascal Lexmond, Anne van der Linden, Theo Bestebroer, Irina Chestakova, Ronald J. Overmars, Stefan van Nieuwkoop, Richard Molenkamp, Annemiek A. van der Eijk, Corine GeurtsvanKessel, Harry Vennema, Adam Meijer, Andrew Rambaut, Jaap van Disse
Publicado en: Nature Medicine, Edición 26/9, 2020, Página(s) 1405-1410, ISSN 1078-8956
Editor: Nature Publishing Group
DOI: 10.1038/s41591-020-0997-y

Emergence and potential transmission route of avian influenza A (H5N1) virus in domestic cats in Poland, June 2023

Autores: Lukasz Rabalski, Aleksandra Milewska, Anne Pohlmann, Karolina Gackowska, Tomasz Lepionka, Klaudiusz Szczepaniak, Agnieszka Swiatalska, Izabela Sieminska, Zbigniew Arent, Martin Beer, Marion Koopmans, Maciej Grzybek, Krzysztof Pyrc
Publicado en: Eurosurveillance, Edición 28, 2024, ISSN 1560-7917
Editor: European Centre for Disease Prevention and Control
DOI: 10.2807/1560-7917.es.2023.28.31.2300390

Temporal Dynamics of Influenza A(H5N1) Subtype before and after the Emergence of H5N8.

Autores: Amer F, Li R, Rabie N, El-Husseiny MH, Yehia N, Hagag NM, Samy M, Selim A, Hassan MK, Hassan WMM, Arafa AS, Lundkvist Å, Shahein MA, Naguib MM.
Publicado en: Viruses, Edición 13/8, 2021, ISSN 1999-4915
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13081565

SARS-CoV-2 receptor-binding domain deep mutational AlphaFold2 structures

Autores: Oz Kilim, Anikó Mentes, Balázs Pál, István Csabai, Ákos Gellért
Publicado en: Scientific Data, Edición 10, 2023, ISSN 2052-4463
Editor: Nature Publishing Group
DOI: 10.1038/s41597-023-02035-z

Multi‐species ELISA for the detection of antibodies against SARS‐CoV‐2 in animals

Autores: Kerstin Wernike, Andrea Aebischer, Anna Michelitsch, Donata Hoffmann, Conrad Freuling, Anne Balkema‐Buschmann, Annika Graaf, Thomas Müller, Nikolaus Osterrieder, Melanie Rissmann, Dennis Rubbenstroth, Jacob Schön, Claudia Schulz, Jakob Trimpert, Lorenz Ulrich, Asisa Volz, Thomas Mettenleiter, Martin Beer
Publicado en: Transboundary and Emerging Diseases, Edición 68/4, 2021, Página(s) 1779-1785, ISSN 1865-1674
Editor: Blackwell-Wiss.-Verl
DOI: 10.1111/tbed.13926

Genetic data in the fight against pandemics

Autores: Ágnes Becsei, Orsolya Anna Pipek, Péter Pollner, István Csabai
Publicado en: AK Journals, Edición 2/1, 2021, Página(s) 12-16, ISSN 2732-2688
Editor: Scientia et Securitas
DOI: 10.1556/112.2021.00006

One Day in Denmark: Comparison of Phenotypic and Genotypic Antimicrobial Susceptibility Testing in Bacterial Isolates From Clinical Settings

Autores: Ana Rita Rebelo, Valeria Bortolaia, Pimlapas Leekitcharoenphon, Dennis Schrøder Hansen, Hans Linde Nielsen, Svend Ellermann-Eriksen, Michael Kemp, Bent Løwe Røder, Niels Frimodt-Møller, Turid Snekloth Søndergaard, John Eugenio Coia, Claus Østergaard, Henrik Westh and Frank M. Aarestrup
Publicado en: Frontiers in Microbiology, Edición 13, 2022, ISSN 1664-302X
Editor: Frontiers Media
DOI: 10.3389/fmicb.2022.804627

CRHP Finder, a webtool for the detection of clarithromycin resistance in Helicobacter pylori from whole‐genome sequencing data

Autores: Melodi Yusibova, Henrik Hasman, Philip Thomas Lanken Conradsen Clausen, Frank Imkamp, Karoline Wagner, Leif Percival Andersen
Publicado en: Helicobacter, Edición 25/6, 2020, ISSN 1083-4389
Editor: Blackwell Publishing Inc.
DOI: 10.1111/hel.12752

Clusters of science and health related Twitter users become more isolated during the COVID-19 pandemic

Autores: Francesco Durazzi, Martin Müller, Marcel Salathé & Daniel Remondini
Publicado en: Scientific Reports volume, Edición 11/19655, 2021, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-021-99301-0

Wolbachia prevalence in the vector species Culex pipiens and Culex torrentium in a Sindbis virus-endemic region of Sweden

Autores: Alexander Bergman; Jenny C. Hesson
Publicado en: Parasites & Vectors, 2021, ISSN 1756-3305
Editor: BioMed Central
DOI: 10.1186/s13071-021-04937-6

Study on the temporal and spatial distribution of Culex mosquitoes in Hanoi, Vietnam

Autores: Janina Krambrich, Thang Nguyen-Tien, Long Pham-Thanh, Sinh Dang-Xuan, Ella Andersson, Patrick Höller, Duoc Trong Vu, Son Hai Tran, Lieu Thi Vu, Dario Akaberi, Jiaxin Ling, John H.-O. Pettersson, Jenny C. Hesson, Johanna F. Lindahl, Åke Lundkvist
Publicado en: Scientific Reports, Edición 14, 2024, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-024-67438-3

Sindbis Virus Infection in Non-Blood-Fed Hibernating Culex pipiens Mosquitoes in Sweden

Autores: Alexander Bergman, Emma Dahl, Åke Lundkvist and Jenny C. Hesson
Publicado en: Viruses, Edición 12/12, 2020, ISSN 1999-4915
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v12121441

Rapid multiplex MinION nanopore sequencing workflow for Influenza A viruses

Autores: Jacqueline King, Timm Harder, Martin Beer, Anne Pohlmann
Publicado en: BMC Infectious Diseases, Edición 20/1, 2020, ISSN 1471-2334
Editor: BioMed Central
DOI: 10.1186/s12879-020-05367-y

Assessing the quality of data for drivers of disease emergence

Autores: L. KELLY, M.P.G. KOOPMANS, V. HORIGAN, A. PAPA, R.S. SIKKEMA, L.G.H. KOREN, E.L. SNARY
Publicado en: Revue Scientifique et Technique de l'OIE, Edición 42, 2023, Página(s) 90-102, ISSN 0253-1933
Editor: Office International des Epizooties (OIE)
DOI: 10.20506/rst.42.3352

Novel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types

Autores: Ilya Plyusnin, Ravi Kant, Anne J Jääskeläinen, Tarja Sironen, Liisa Holm, Olli Vapalahti, Teemu Smura
Publicado en: Virus Evolution, Edición 6/2, 2020, ISSN 2057-1577
Editor: Oxford Academic
DOI: 10.1093/ve/veaa091

Modeling the impact of surveillance activities combined with physical distancing interventions on COVID-19 epidemics at a local level

Autores: Guan-Jhou Chen, John R B Palmer, Frederic Bartumeus and Ana Alba-Casals
Publicado en: Infectious Disease Modelling, Edición 7, 2022, ISSN 2468-0427
Editor: Elsevier
DOI: 10.1016/j.idm.2022.11.001

Circulating microRNA signatures associated with disease severity and outcome in COVID-19 patients

Autores: Alessandra Giannella, Silvia Riccetti, Alessandro Sinigaglia, Chiara Piubelli, Elisa Razzaboni, Piero Di Battista, Matteo Agostini, Emanuela Dal Molin, Riccardo Manganelli, Federico Gobbi, Giulio Ceolotto, Luisa Barzon
Publicado en: Frontiers in Immunology, 2022, ISSN 1664-3224
Editor: Frontiers Media SA
DOI: 10.3389/fimmu.2022.968991

The potential of Hungarian bauxite residue isolates for biotechnological applications

Autores: Viktória Feigl, Anna Medgyes-Horváth, András Kari, Ádám Török, Nelli Bombolya, Zsófia Berkl, Éva Farkas, Ildikó Fekete-Kertész
Publicado en: Biotechnology Reports, Edición 41, 2024, Página(s) e00825, ISSN 2215-017X
Editor: Elsevier BV
DOI: 10.1016/j.btre.2023.e00825

First detection of Ixodiphagus hookeri (Hymenoptera: Encyrtidae) in Ixodes ricinus ticks (Acari: Ixodidae) from multiple locations in Hungary

Autores: Adrienn Gréta Tóth, Róbert Farkas, Mónika Gyurkovszky, Eszter Krikó, Norbert Solymosi
Publicado en: Scientific Reports, Edición 13, 2023, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-023-28969-3

ResFinder – an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes

Autores: Alfred Ferrer Florensa, Rolf Sommer Kaas, Philip Thomas Lanken Conradsen Clausen, Derya Aytan-Aktug and Frank M. Aarestrup
Publicado en: Microbial Genomics, Edición 8/1, 2022, ISSN 2057-5858
Editor: The Microbiology Society
DOI: 10.1099/mgen.0.000748

Image-based and machine learning-guided multiplexed serology test for SARS-CoV-2

Autores: Vilja Pietiäinen, Minttu Polso, Ede Migh, Christian Guckelsberger, Maria Harmati, Akos Diosdi, Laura Turunen, Antti Hassinen, Swapnil Potdar, Annika Koponen, Edina Gyukity Sebestyen, Ferenc Kovacs, Andras Kriston, Reka Hollandi, Katalin Burian, Gabriella Terhes, Adam Visnyovszki, Eszter Fodor, Zsombor Lacza, Anu Kantele, Pekka Kolehmainen, Laura Kakkola, Tomas Strandin, Lev Levanov, Olli Kallioni
Publicado en: Cell Reports Methods, Edición 3, 2023, Página(s) 100565, ISSN 2667-2375
Editor: Cell Press
DOI: 10.1016/j.crmeth.2023.100565

Incidence Trends for SARS-CoV-2 Alpha and Beta Variants, Finland, Spring 2021

Autores: Ravi Kant, Phuoc Truong Nguyen, Soile Blomqvist, Mert Erdin, Hussein Alburkat, Maija Suvanto, Fathiah Zakham, Veera Salminen, Viktor Olander, Minna Paloniemi, Leena Huhti, Sara Lehtinen, Bruno Luukinen, Hanna Jarva, Hannimari Kallio-Kokko, Satu Kurkela, Maija Lappalainen, Hanna Liimatainen, Sari Hannula, Jani Halkilahti, Jonna Ikonen, Niina Ikonen, Otto Helve, Marianne Gunell, Tytti Vuorinen, Ilya
Publicado en: Emerging Infectious Diseases, Edición 27/12, 2021, ISSN 1080-6040
Editor: US National Center for Infectious Diseases
DOI: 10.3201/eid2712.211631

Mis-tweeting communication: a Vaccine Hesitancy analysis among twitter users in Italy

Autores: Davide Gori, Francesco Durazzi, Marco Montalti, Zeno Di Valerio, Chiara Reno, Maria Pia Fantini, Daniel Remondini
Publicado en: Acta Biomedica, Edición 92/6, 2021, ISSN 0392-4203
Editor: Mattioli 1885 SpA
DOI: 10.23750/abm.v92is6.12251

SARS-CoV-2 in hospital indoor environments is predominantly non-infectious

Autores: Janina Krambrich, Dario Akaberi, Jiaxin Ling, Tove Hofman, Lennart Svensson, Marie Hagbom and Åke Lundkvist
Publicado en: Virology Journal, Edición 18/109, 2021, ISSN 1743-422x
Editor: BioMed Central
DOI: 10.1186/s12985-021-01556-6

Emergence of ST39 carbapenem-resistant Klebsiella pneumoniae producing VIM-1 and KPC-2

Autores: Theodoros Karampatakis, Charalampos Zarras, Styliani Pappa, Eleni Vagdatli, Elias Iosifidis, Emmanuel Roilides, Anna Papa
Publicado en: Microbial Pathofenesis, Edición 162, 2022, ISSN 0882-4010
Editor: Elsevier BV
DOI: 10.1016/j.micpath.2021.105373

Predicting Spatial Patterns of Sindbis Virus (SINV) Infection Risk in Finland Using Vector, Host and Environmental Data

Autores: Ruut Uusitalo, Mika Siljander, C. Lorna Culverwell, Guy Hendrickx, Andreas Lindén, Timothée Dub, Juha Aalto, Jussi Sane, Cedric Marsboom, Maija T. Suvanto, Andrea Vajda, Hilppa Gregow, Essi M. Korhonen, Eili Huhtamo, Petri Pellikka, Olli Vapalahti
Publicado en: International Journal of Environmental Research and Public Health, Edición 18/13, 2021, Página(s) 7064, ISSN 1660-4601
Editor: IJERPH
DOI: 10.3390/ijerph18137064

Transmission of SARS-CoV-2 on mink farms between humans and mink and back to humans

Autores: Bas B. Oude Munnink, Reina S. Sikkema, David F. Nieuwenhuijse, Robert Jan Molenaar, Emmanuelle Munger, Richard Molenkamp, Arco van der Spek, Paulien Tolsma, Ariene Rietveld, Miranda Brouwer, Noortje Bouwmeester-Vincken, Frank Harders, Renate Hakze-van der Honing, Marjolein C. A. Wegdam-Blans, Ruth J. Bouwstra, Corine GeurtsvanKessel, Annemiek A. van der Eijk, Francisca C. Velkers, Lidwien A. M. Sm
Publicado en: Science, Edición 371/6525, 2021, Página(s) 172-177, ISSN 0036-8075
Editor: American Association for the Advancement of Science
DOI: 10.1126/science.abe5901

A curated data resource of 214K metagenomes for characterization of the global antimicrobial resistome

Autores: Hannah-Marie Martiny, Patrick Munk,Christian Brinch, Frank M. Aarestrup and Thomas N. Petersen
Publicado en: PLOS Biology, 2022, ISSN 1544-9173
Editor: Public Library of Science
DOI: 10.1371/journal.pbio.3001792

Mosquito alert: leveraging citizen science to create a GBIF mosquito occurrence dataset

Autores: Živko Južnič-Zonta, Isis Sanpera-Calbet, Roger Eritja, John R.B. Palmer, Agustí Escobar, Joan Garriga, Aitana Oltra, Alex Richter-Boix, Francis Schaffner, Alessandra della Torre, Miguel Ángel Miranda, Marion Koopmans, Luisa Barzon, Frederic Bartumeus Ferre
Publicado en: GigaByte, Edición 1/13, 2022, ISSN 2709-4715
Editor: GigaScience Press
DOI: 10.5281/zenodo.6379002

Differential plasmacytoid dendritic cell phenotype and type I Interferon response in asymptomatic and severe COVID-19 infection

Autores: Martina Severa, Roberta A. Diotti, Marilena P. Etna, Fabiana Rizzo, Stefano Fiore, Daniela Ricci, Marco Iannetta, Alessandro Sinigaglia, Alessandra Lodi, Nicasio Mancini, Elena Criscuolo, Massimo Clementi, Massimo Andreoni, Stefano Balducci, Luisa Barzon, Paola Stefanelli, Nicola Clementi, Eliana M. Coccia
Publicado en: PLOS Pathogens, Edición 17/9, 2021, ISSN 1553-7366
Editor: Public Library of Science
DOI: 10.1371/journal.ppat.1009878

Modelling West Nile Virus and Usutu Virus Pathogenicity in Human Neural Stem Cells

Autores: Silvia Riccetti, Alessandro Sinigaglia, Giovanna Desole, Norbert Nowotny, Marta Trevisan, Luisa Barzon
Publicado en: Viruses, Edición 12/8, 2020, Página(s) 882, ISSN 1999-4915
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v12080882

Adaptation, spread and transmission of SARS-CoV-2 in farmed minks and associated humans in the Netherlands

Autores: Lu Lu, Reina S Sikkema, Francisca C Velkers, David F Nieuwenhuijse, Egil A J Fischer, Paola A Meijer, Noortje Bouwmeester-Vincken, Ariene Rietveld, Marjolijn C A Wegdam-Blans, Paulien Tolsma, Marco Koppelman, Lidwien A M Smit, Renate W Hakze-van der Honing , Wim H M van der Poel, Arco N van der Spek, Marcel A H Spierenburg, Robert Jan Molenaar, Jan de Rond, Marieke Augustijn, Mark Woolhouse, J Arj
Publicado en: Nature Communications, Edición 12/1, 2021, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-021-27096-9

Connect to Protect: Dynamics and Genetic Connections of Highly Pathogenic Avian Influenza Outbreaks in Poultry from 2016 to 2021 in Germany

Autores: King, Jacqueline, Christoph Staubach, Christiane Lüder, Susanne Koethe, Anne Günther, Lina Stacker, Dennis Rubbenstroth, Klaas Dietze, Christian Grund, Franz J. Conraths, Timm Harder, Martin Beer, and Anne Pohlmann
Publicado en: Viruses, Edición 14, 2022, ISSN 1999-4915
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v14091849

Detection of antimicrobial resistance genes in urban air

Autores: Ágnes Becsei, Norbert Solymosi, István Csabai, Donát Magyar
Publicado en: Microbiology Open, 2021, ISSN 2045-8827
Editor: John Wiley and Sons Inc.
DOI: 10.1002/mbo3.1248

Rapid SARS-CoV-2 Intra-Host and Within-Household Emergence of Novel Haplotypes

Autores: Manuto, Laura, Marco Grazioli, Andrea Spitaleri, Paolo Fontana, Luca Bianco, Luigi Bertolotti, Martina Bado, Giorgia Mazzotti, Federico Bianca, Francesco Onelia, Giovanni Lorenzin, Fabio Simeoni, Dejan Lazarevic, Elisa Franchin, Claudia Del Vecchio, Ilaria Dorigatti, Giovanni Tonon, Daniela Maria Cirillo, Enrico Lavezzo, Andrea Crisanti, and Stefano Toppo
Publicado en: Viruses, Edición 14/2, 2022, ISSN 1999-4915
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v14020399

Metagenomic analysis of sewage for surveillance of bacterial pathogens: A release experiment to determine sensitivity

Autores: Simon Kohle, Thomas N. Petersen, Håkan Vigre, Markus Hans Kristofer Johansson, Frank M. Aarestrup
Publicado en: PLOS ONE, Edición 19, 2024, Página(s) e0300733, ISSN 1932-6203
Editor: Public Library of Science
DOI: 10.1371/journal.pone.0300733

Early initiation of the respiratory syncytial virus season in 2021-2022, Greece

Autores: Styliani Pappa, Katerina Haidopoulou, Charalampos Zarras, Eleni Theodorakou, Eleni Papadimitriou, Elias Iosifidis, Ioanna Gkeka, Konstantina Stoikou, Eleni Vagdatli, Lemonia Skoura and Anna Papa
Publicado en: Journal of Medical Virology, 2022, ISSN 0146-6615
Editor: John Wiley & Sons Inc.
DOI: 10.1002/jmv.27671

A glimpse of antimicrobial resistance gene diversity in kefir and yoghurt

Autores: Adrienn Gréta Tóth, István Csabai, Gergely Maróti, Ákos Jerzsele, Attila Dubecz, Árpád V. Patai, Maura Fiona Judge, Sára Ágnes Nagy, László Makrai, Krisztián Bányai, Géza Szita, Norbert Solymosi
Publicado en: Scientific Reports, Edición 10/1, 2020, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-020-80444-5

ARGprofiler—a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets

Autores: Hannah-Marie Martiny, Nikiforos Pyrounakis, Thomas N Petersen, Oksana Lukjančenko, Frank M Aarestrup, Philip T L C Clausen, Patrick Munk
Publicado en: Bioinformatics, Edición 40, 2024, ISSN 1367-4803
Editor: Oxford University Press
DOI: 10.1093/bioinformatics/btae086

Comparative analysis of bioinformatics tools to characterize SARS-CoV-2 subgenomic RNAs

Autores: Denise Lavezzari, Antonio Mori, Elena Pomari, Michela Deiana, Antonio Fadda, Luca Bertoli, Alessandro Sinigaglia, Silvia Riccetti, Luisa Barzon, Chiara Piubelli, Massimo Delledonne, Maria Rosaria Capobianchi, Concetta Castilletti
Publicado en: Life Science Alliance, Edición 6, 2024, Página(s) e202302017, ISSN 2575-1077
Editor: Life Science Alliance
DOI: 10.26508/lsa.202302017

Autochthonous dengue outbreak in Italy 2020: Clinical, virological and entomological findings

Autores: Luisa Barzon, Federico Gobbi, Gioia Capelli, Fabrizio Montarsi, Simone Martini, Silvia Riccetti, Alessandro Sinigaglia, Monia Pacenti, Giacomina Pavan, Mario Rassu, Maria Teresa Padovan, Vinicio Manfrin, Francesca Zanella, Francesca Russo, Felice Foglia, Luca Lazzarini
Publicado en: Journal of Travel Medicine, 2021, ISSN 1195-1982
Editor: B.C. Decker Inc.
DOI: 10.1093/jtm/taab130

Neuropilin-1 facilitates SARS-CoV-2 cell entry and infectivity

Autores: Ludovico Cantuti-Castelvetri, Ravi Ojha, Liliana D. Pedro, Minou Djannatian, Jonas Franz, Suvi Kuivanen, Franziska van der Meer, Katri Kallio, Tuğberk Kaya, Maria Anastasina, Teemu Smura, Lev Levanov, Leonora Szirovicza, Allan Tobi, Hannimari Kallio-Kokko, Pamela Österlund, Merja Joensuu, Frédéric A. Meunier, Sarah J. Butcher, Martin Sebastian Winkler, Brit Mollenhauer, Ari Helenius, Ozgun Gok
Publicado en: Science, Edición 370/6518, 2020, Página(s) 856-860, ISSN 0036-8075
Editor: American Association for the Advancement of Science
DOI: 10.1126/science.abd2985

Discovery of Vibrio cholerae in Urban Sewage in Copenhagen, Denmark

Autores: Christian Brinch, Saria Otani, Patrick Munk, Maaike van den Beld, Eelco Franz, Frank M. Aarestrup
Publicado en: Microbial Ecology, Edición 87, 2024, ISSN 0095-3628
Editor: Springer Verlag
DOI: 10.1007/s00248-024-02419-7

Seroprevalence of tick-borne encephalitis virus and vaccination coverage of tick-borne encephalitis, Sweden, 2018 to 2019

Autores: Bo Albinsson, Tove Hoffman, Linda Kolstad, Tomas Bergström, Gordana Bogdanovic, Anna Heydecke, Mirja Hägg, Torbjörn Kjerstadius, Ylva Lindroth, Annika Petersson, Marie Stenberg, Sirkka Vene, Patrik Ellström, Bengt Rönnberg, Åke Lundkvist
Publicado en: Eurosurveillance, Edición 29, 2024, ISSN 1560-7917
Editor: European Centre for Disease Prevention and Control
DOI: 10.2807/1560-7917.es.2024.29.2.2300221

Susceptibility of Raccoon Dogs for Experimental SARS-CoV-2 Infection

Autores: Conrad M. Freuling, Angele Breithaupt, Thomas Müller, Julia Sehl, Anne Balkema-Buschmann, Melanie Rissmann, Antonia Klein, Claudia Wylezich, Dirk Höper, Kerstin Wernike, Andrea Aebischer, Donata Hoffmann, Virginia Friedrichs, Anca Dorhoi, Martin H. Groschup, Martin Beer, Thomas C. Mettenleiter
Publicado en: Emerging Infectious Diseases, Edición 26/12, 2020, Página(s) 2982-2985, ISSN 1080-6040
Editor: US National Center for Infectious Diseases
DOI: 10.3201/eid2612.203733

Highly Divergent SARS-CoV-2 Alpha Variant in Chronically Infected Immunocompromised Person

Autores: Bas B Oude Munnink, Roel H T Nijhuis, Nathalie Worp, Marjan Boter, Babette Weller, Babs E Verstrepen, Corine GeurtsvanKessel, Maarten F Corsten, Anne Russcher and Marion Koopmans
Publicado en: Emerging Infectious Diseases, Edición 28/9, 2022, ISSN 1080-6040
Editor: US National Center for Infectious Diseases
DOI: 10.3201/eid2809.220875

Global Distribution of mcr Gene Variants in 214K Metagenomic Samples

Autores: Hannah-Marie Martiny, Patrick Munk, Christian Brinch, Judit Szarvas, Frank M Aarestrup, Thomas Nordahl Petersen
Publicado en: mSystems, Edición 7/2, 2022, ISSN 2379-5077
Editor: American Society for Microbiology
DOI: 10.1128/msystems.00105-22

Early start of seasonal transmission and co-circulation of West Nile virus lineage 2 and a newly introduced lineage 1 strain in northern Italy, June 2022

Autores: Barzon L, Montarsi F, Quaranta E, Monne I, Pacenti M, Michelutti A, Toniolo F, Danesi P, Marchetti G, Gobbo F, Sinigaglia A, Riccetti S, Dal Molin E, Favero L, Russo F, Capelli G.
Publicado en: Eurosurveillance, Edición 27/29/21, 2022, ISSN 1560-7917
Editor: ECDC
DOI: 10.2807/1560-7917.es.2022.27.29.2200548

The phylodynamics of SARS-CoV-2 during 2020 in Finland

Autores: Phuoc Truong Nguyen, Ravi Kant, Frederik Van den Broeck, Maija T. Suvanto, Hussein Alburkat, Jenni Virtanen, Ella Ahvenainen, Robert Castren, Samuel L. Hong, Guy Baele, Maarit J. Ahava, Hanna Jarva, Suvi Tuulia Jokiranta, Hannimari Kallio-Kokko, Eliisa Kekäläinen, Vesa Kirjavainen, Elisa Kortela, Satu Kurkela, Maija Lappalainen, Hanna Liimatainen, Marc A. Suchard, Sari Hannula, Pekka Ellonen, Ta
Publicado en: Communications Medicine, Edición 2/65, 2022, ISSN 2730-664X
Editor: Nature Portfolio publishing
DOI: 10.1038/s43856-022-00130-7

Enhanced Viral Metagenomics with Lazypipe 2

Autores: Ilya Plyusnin, Olli Vapalahti, Tarja Sironen, Ravi Kant, Teemu Smura
Publicado en: Viruses, Edición 15, 2023, Página(s) 431, ISSN 1999-4915
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v15020431

Intranasal trimeric sherpabody inhibits SARS-CoV-2 including recent immunoevasive Omicron subvariants

Autores: Anna R. Mäkelä, Hasan Uğurlu, Liina Hannula, Ravi Kant, Petja Salminen, Riku Fagerlund, Sanna Mäki, Anu Haveri, Tomas Strandin, Lauri Kareinen, Jussi Hepojoki, Suvi Kuivanen, Lev Levanov, Arja Pasternack, Rauno A. Naves, Olli Ritvos, Pamela Österlund, Tarja Sironen, Olli Vapalahti, Anja Kipar, Juha T. Huiskonen, Ilona Rissanen, Kalle Saksela
Publicado en: Nature Communications, Edición 14, 2023, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-023-37290-6

West Nile Virus in Culex Mosquitoes in Central Macedonia, Greece, 2022

Autores: Katerina Tsioka, Sandra Gewehr, Styliani Pappa, Stella Kalaitzopoulou, Konstantina Stoikou, Spiros Mourelatos and Anna Papa
Publicado en: Viruses, Edición 15/1, 2023, ISSN 1999-4915
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v15010224

Synergistic Block of SARS-CoV-2 Infection by Combined Drug Inhibition of the Host Entry Factors PIKfyve Kinase and TMPRSS2 Protease

Autores: Alex J B Kreutzberger, Anwesha Sanyal, Ravi Ojha, Jesse D Pyle, Olli Vapalahti, Giuseppe Balistreri, Tom Kirchhausen
Publicado en: Journal of Virology, Edición 95/21, 2021, ISSN 0022-538X
Editor: American Society for Microbiology
DOI: 10.1128/jvi.00975-21

Scaling neighbor joining to one million taxa with dynamic and heuristic neighbor joining

Autores: Philip T L C Clausen
Publicado en: Bioinformatics, Edición 39/1, 2023, ISSN 1367-4803
Editor: Oxford University Press
DOI: 10.1093/bioinformatics/btac774

Antimicrobial resistance gene lack in tick-borne pathogenic bacteria

Autores: Márton Papp, Adrienn Gréta Tóth, Gábor Valcz, László Makrai, Sára Ágnes Nagy, Róbert Farkas, Norbert Solymosi
Publicado en: Scientific Reports, Edición 13, 2023, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-023-35356-5

At the tip of an iceberg: citizen science and active surveillance collaborating to broaden the known distribution of Aedes japonicus in Spain

Autores: Roger Eritja, Sarah Delacour-Estrella, Ignacio Ruiz-Arrondo, Mikel A. González, Carlos Barceló, Ana L. García-Pérez, Javier Lucientes, Miguel Á. Miranda, Frederic Bartumeus
Publicado en: Parasites & Vectors, Edición 14/1, 2021, ISSN 1756-3305
Editor: BioMed Central
DOI: 10.1186/s13071-021-04874-4

The central role of Italy in the spatial spread of USUTU virus in Europe

Autores: B Zecchin, A Fusaro, A Milani, A Schivo, S Ravagnan, S Ormelli, C Mavian, A Michelutti, F Toniolo, L Barzon, I Monne, G Capelli
Publicado en: Virus Evolution, Edición 7/1, 2021, ISSN 2057-1577
Editor: Oxford University Press
DOI: 10.1093/ve/veab048

Infections with highly pathogenic avian influenza A virus (HPAIV) H5N8 in harbor seals at the German North Sea coast, 2021

Autores: Alexander Postel, Jacqueline King, Franziska K Kaiser, Johanna Kennedy, Mara Sophie Lombardo, Wencke Reineking, Madeleine de le Roi, Timm Harder, Anne Pohlmann, Thomas Gerlach, Guus Rimmelzwaan, Simon Rohner, Lotte C Striewe, Stephanie Gross, Luca A Schick, Jana C Klink, Katharina Kramer, Albert D M E Osterhaus, Martin Beer, Wolfgang Baumgärtner, Ursula Siebert and Paul Becher
Publicado en: Emerging Microbes & Infections, Edición 11/1, 2022, ISSN 2222-1751
Editor: Nature Publishing Group
DOI: 10.1080/22221751.2022.2043726

Automated download and clean-up of family-specific databases for kmer-based virus identification

Autores: Rosa L Allesøe, Camilla K Lemvigh, My V T Phan, Philip T L C Clausen, Alfred F Florensa, Marion P G Koopmans, Ole Lund, Matthew Cotten
Publicado en: Bioinformatics, Edición 37/5, 2020, Página(s) 705-710, ISSN 1367-4803
Editor: Oxford University Press
DOI: 10.1093/bioinformatics/btaa857

Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses

Autores: Nadim Rahman, Colman O'Cathail, Ahmad Zyoud, Alexey Sokolov, Bas Oude Munnink, Björn Grüning, Carla Cummins, Clara Amid, David F. Nieuwenhuijse, Dávid Visontai, David Yu Yuan, Dipayan Gupta, Divyae K. Prasad, Gábor Máté Gulyás, Gabriele Rinck, Jasmine McKinnon, Jeena Rajan, Jeff Knaggs, Jeffrey Edward Skiby, József Stéger, Judit Szarvas, Khadim Gueye, Krisztián Papp, Maarten Hoek, Manish
Publicado en: Microbial Genomics, Edición 10, 2024, ISSN 2057-5858
Editor: Microbiology Society
DOI: 10.1099/mgen.0.001188

Antimicrobial resistance determinants in silage

Autores: Sára Ágnes Nagy, Adrienn Gréta Tóth, Márton Papp, Selçuk Kaplan & Norbert Solymosi
Publicado en: Scientific Reports, Edición 12/5243, 2022, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-022-09296-5

Comparative pathogenesis of COVID-19, MERS, and SARS in a nonhuman primate model

Autores: Barry Rockx, Thijs Kuiken, Sander Herfst, Theo Bestebroer, Mart M. Lamers, Bas B. Oude Munnink, Dennis de Meulder, Geert van Amerongen, Judith van den Brand, Nisreen M. A. Okba, Debby Schipper, Peter van Run, Lonneke Leijten, Reina Sikkema, Ernst Verschoor, Babs Verstrepen, Willy Bogers, Jan Langermans, Christian Drosten, Martje Fentener van Vlissingen, Ron Fouchier, Rik de Swart, Marion Koopmans,
Publicado en: Science, Edición 368/6494, 2020, Página(s) 1012-1015, ISSN 0036-8075
Editor: American Association for the Advancement of Science
DOI: 10.1126/science.abb7314

High number of HPAI H5 virus infections and antibodies in wild carnivores in the Netherlands, 2020–2022

Autores: Irina V. Chestakova, Anne van der Linden, Beatriz Bellido Martin, Valentina Caliendo, Oanh Vuong, Sanne Thewessen, Tijmen Hartung, Theo Bestebroer, Jasja Dekker, Bob Jonge Poerink, Andrea Gröne, Marion Koopmans, Ron Fouchier, Judith M. A. van den Brand, Reina S. Sikkema
Publicado en: Emerging Microbes & Infections, Edición 12, 2024, ISSN 2222-1751
Editor: Nature Publishing Group
DOI: 10.1080/22221751.2023.2270068

Importance of mobile genetic elements for dissemination of antimicrobial resistance in metagenomic sewage samples across the world

Autores: Markus H. K. Johansson, Frank M. Aarestrup, Thomas N. Petersen
Publicado en: PLOS ONE, Edición 18, 2023, Página(s) e0293169, ISSN 1932-6203
Editor: Public Library of Science
DOI: 10.1371/journal.pone.0293169

History and classification of Aigai virus (formerly Crimean-Congo haemorrhagic fever virus genotype VI)

Autores: Anna Papa, Marco Marklewitz, Sofia Paraskevopoulou, Aura R. Garrison, Sergey V. Alkhovsky, Tatjana Avšič-Županc, Dennis A. Bente, Éric Bergeron, Felicity Burt, Nicholas Di Paola, Koray Ergünay, Roger Hewson, Ali Mirazimi, Amadou Alpha Sall, Jessica R. Spengler, Thomas S. Postler, Gustavo Palacios, and Jens H. Kuhn
Publicado en: The Journal of General Virology, Edición 103/4, 2022, ISSN 1465-2099
Editor: Microbiology Society
DOI: 10.1099/jgv.0.001734

Identification of mutations in SARS-CoV-2 PCR primer regions

Autores: Anikó Mentes, Krisztián Papp, Dávid Visontai, József Stéger, VEO Technical Working Group, István Csabai, Anna Medgyes-Horváth and Orsolya Anna Pipek
Publicado en: Scientific Reports, Edición 12, 2022, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-022-21953-3

Modelling antimicrobial resistance transmission to guide personalized antimicrobial stewardship interventions and infection control policies in healthcare setting: a pilot study

Autores: Francesco Durazzi, Maria Diletta Pezzani, Fabiana Arieti, Omar Simonetti, Lorenzo Maria Canziani, Elena Carrara, Lorenzo Barbato, Francesco Onorati, Daniel Remondini, Evelina Tacconelli
Publicado en: Scientific Reports, Edición 13, 2024, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-023-42511-5

Flankophile: a bioinformatic pipeline for prokaryotic genomic synteny analysis

Autores: Alix Vincent Thorn, Frank M. Aarestrup, Patrick Munk
Publicado en: Microbiology Spectrum, Edición 12, 2024, ISSN 2165-0497
Editor: ASM
DOI: 10.1128/spectrum.02413-23

COVID-19 Neuropathology: evidence for SARS-CoV-2 invasion of Human Brainstem Nuclei

Autores: Aron Emmi, Stefania Rizzo, Luisa Barzon, Michele Sandre, Elisa Carturan, Alessandro Sinigaglia, Silvia Riccetti, Mila della Barbera, Rafael Boscolo-Berto, Patrizia Cocco, Veronica Macchi, Angelo Antonini, Monica De Gaspari, Cristina Basso, Raffaele De Caro, Andrea Porzionato
Publicado en: BioRxiv, 2022, ISSN 2692-8205
Editor: Cold Spring Habor Laboratory Press
DOI: 10.1101/2022.06.29.498117

Vector competence of Swedish Culex pipiens mosquitoes for Usutu virus

Autores: Janina Krambrich, Emma Bole-Feysot, Patrick Höller, Åke Lundkvist, Jenny C. Hesson
Publicado en: One Health, Edición 18, 2024, Página(s) 100707, ISSN 2352-7714
Editor: Elsevier
DOI: 10.1016/j.onehlt.2024.100707

Natural diversity of the honey bee (Apis mellifera) gut bacteriome in various climatic and seasonal states

Autores: Márton Papp, László Békési, Róbert Farkas, László Makrai, Maura Fiona Judge, Gergely Maróti, Dóra Tőzsér, Norbert Solymosi
Publicado en: PLOS ONE, Edición 17/9, 2022, ISSN 1932-6203
Editor: Public Library of Science
DOI: 10.1371/journal.pone.0273844

Genomic monitoring of SARS-CoV-2 uncovers an Nsp1 deletion variant that modulates type I interferon response

Autores: Jing-wen Lin, Chao Tang, Han-cheng Wei, Baowen Du, Chuan Chen, Minjin Wang, Yongzhao Zhou, Ming-xia Yu, Lu Cheng, Suvi Kuivanen, Natacha S. Ogando, Lev Levanov, Yuancun Zhao, Chang-ling Li, Ran Zhou, Zhidan Li, Yiming Zhang, Ke Sun, Chengdi Wang, Li Chen, Xia Xiao, Xiuran Zheng, Sha-sha Chen, Zhen Zhou, Ruirui Yang, Dan Zhang, Mengying Xu, Junwei Song, Danrui Wang, Yupeng Li, ShiKun Lei, Wanqin Ze
Publicado en: Cell Host & Microbe, Edición 29/3, 2021, Página(s) 489-502.e8, ISSN 1931-3128
Editor: Cell Press
DOI: 10.1016/j.chom.2021.01.015

The evolutionary and molecular history of a chikungunya virus outbreak lineage

Autores: Janina Krambrich, Filip Mihalič, Michael W. Gaunt, Jon Bohlin, Jenny C. Hesson, Åke Lundkvist, Xavier de Lamballerie, Cixiu Li, Weifeng Shi, John H.-O. Pettersson
Publicado en: PLOS Neglected Tropical Diseases, Edición 18, 2024, Página(s) e0012349, ISSN 1935-2735
Editor: PLOS
DOI: 10.1371/journal.pntd.0012349

Sindbis virus outbreak and evidence for geographical expansion in Finland, 2021

Autores: Maija T Suvanto, Ruut Uusitalo, Eveline Otte im Kampe, Tytti Vuorinen, Satu Kurkela, Olli Vapalahti, Timothée Dub, Eili Huhtamo and Essi M Korhonen
Publicado en: Euro Surveillance, Edición 27/31, 2022, ISSN 1025-496X
Editor: Centre Europeen pour la Surveillance Epidemiologique du SIDA
DOI: 10.2807/1560-7917.es.2022.27.31.2200580

Mobile Antimicrobial Resistance Genes in Probiotics

Autores: Adrienn Gréta Tóth, István Csabai, Maura Fiona Judge, Gergely Maróti, Ágnes Becsei, Sándor Spisák, and Norbert Solymosi
Publicado en: Antibiotics, Edición 10/11, 2021, ISSN 2078-2489
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/antibiotics10111287

Occurrence of Antibodies against SARS-CoV-2 in the Domestic Cat Population of Germany

Autores: Anna Michelitsch, Donata Hoffmann, Kerstin Wernike, Martin Beer
Publicado en: Vaccines, Edición 8/4, 2020, Página(s) 772, ISSN 2076-393X
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/vaccines8040772

Association between guilds of birds in the African-Western Palaearctic region and the tick species Hyalomma rufipes, one of the main vectors of Crimean-Congo hemorrhagic fever virus

Autores: Tove Hoffman, Laura G. Carra, Patrik Öhagen, Thord Fransson, Christos Barboutis, Dario Piacentini, Jordi Figuerola, Yosef Kiat, Alejandro Onrubia, Thomas G.T. Jaenson, Kenneth Nilsson, Åke Lundkvist, and Björn Olsen
Publicado en: One Health, 2021, ISSN 2352-7714
Editor: Elsevier
DOI: 10.1016/j.onehlt.2021.100349

Novel HPAIV H5N8 Reassortant (Clade 2.3.4.4b) Detected in Germany

Autores: Jacqueline King, Christoph Schulze, Andreas Engelhardt, Andreas Hlinak, Sara-Lisa Lennermann, Kerstin Rigbers, Jasmin Skuballa, Christoph Staubach, Thomas C. Mettenleiter, Timm Harder, Martin Beer, Anne Pohlmann
Publicado en: Viruses, Edición 12/3, 2020, Página(s) 281, ISSN 1999-4915
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v12030281

Seasonal coronavirus-specific B cells with limited SARS-CoV-2 cross-reactivity dominate the IgG response in severe COVID-19.

Autores: Muriel Aguilar-Bretones; Brenda M. Westerhuis; Matthijs P. Raadsen; Erwin de Bruin; Felicity D. Chandler; Nisreen M.A. Okba; Bart L. Haagmans; Thomas Langerak; Henrik Endeman; Johannes P. C. van den Akker; Diederik Gommers; Eric C. M. van Gorp; Corine H. GeurtsvanKessel; Rory D. de Vries; Ron A. M. Fouchier; Barry Rockx; Marion Koopmans; Gijsbert P. van Nierop
Publicado en: Journal of Clinical Investigation, Edición 51, 2021, ISSN 1558-8238
Editor: American Society for Clinical Investigation
DOI: 10.1172/jci150613

Antigenic cartography of SARS-CoV-2 reveals that Omicron BA.1 and BA.2 are antigenically distinct.

Autores: Mykytyn, Anna Z; Rissmann, Melanie; Kok, Adinda; Rosu, Miruna E; Schipper, Debby; Breugem, Tim I; van den Doel, Petra B; Chandler, Felicity; Bestebroer, Theo; de Wit, Maurice; van Royen, Martin E; Molenkamp, Richard; Oude Munnink, Bas B; de Vries, Rory D; GeurtsvanKessel, Corine; Smith, Derek J; Koopmans, Marion P G; Rockx, Barry; Lamers, Mart M; Fouchier, Ron A M; Haagmans, Bart L.
Publicado en: Science Immunology, Edición 7/75, 2022, ISSN 2470-9468
Editor: AAAS
DOI: 10.1126/sciimmunol.abq4450

Longitudinal analysis of T cell receptor repertoires reveals shared patterns of antigen-specific response to SARS-CoV-2 infection

Autores: Rachel M Gittelman, Enrico Lavezzo, Thomas M Snyder, H Jabran Zahid, Cara L Carty, Rebecca Elyanow, Sudeb Dalai, Ilan Kirsch, Lance Baldo, Laura Manuto, Elisa Franchin, Claudia Del Vecchio, Monia Pacenti, Caterina Boldrin, Margherita Cattai, Francesca Saluzzo, Andrea Padoan, Mario Plebani, Fabio Simeoni, Jessica Bordini, Nicola I Lorè, Dejan Lazarević, Daniela M Cirillo, Paolo Ghia, Stefano Topp
Publicado en: JCI Insight, 2022, ISSN 2077-0383
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.1172/jci.insight.151849

Surveillance and risk assessment for early detection of emerging infectious diseases in livestock

Autores: J. GUITIÃN, P. ALARCON, E.L. SNARY, J.A. DREWE, M. CROTTA
Publicado en: Revue Scientifique et Technique de l'OIE, Edición 42, 2023, Página(s) 120-127, ISSN 0253-1933
Editor: Office International des Epizooties (OIE)
DOI: 10.20506/rst.42.3355

Evaluation of the use of alternative sample types for mosquito-borne flavivirus surveillance: Using Usutu virus as a model

Autores: Nnomzie C. Atama, Irina V. Chestakova, Erwin de Bruin, Tijs J. van den Berg, Emmanuelle Munger, Chantal Reusken, Bas B. Oude Munnink, Henk van der Jeugd, Judith M.A. van den Brand, Marion P.G. Koopmans and Reina S. Sikkema
Publicado en: One Health, Edición 15, 2022, ISSN 2352-7714
Editor: Elsevier
DOI: 10.1016/j.onehlt.2022.100456

Neonatal Bloodstream Infection with Ceftazidime-Avibactam-Resistant blaKPC-2-Producing Klebsiella pneumoniae Carrying blaVEB-25

Autores: Charalampos Zarras, Elias Iosifidis, Maria Simitsopoulou, Styliani Pappa, Angeliki Kontou, Emmanuel Roilides, Anna Papa
Publicado en: Antibiotics, Edición 12, 2023, Página(s) 1290, ISSN 2079-6382
Editor: MDPI
DOI: 10.3390/antibiotics12081290

Comparing full variation profile analysis with the conventional consensus method in SARS-CoV-2 phylogeny

Autores: Regina Nóra Fiam, Csabai István, Solymosi Norbert
Publicado en: Briefings in Bioinformatics, Edición 25, 2024, ISSN 1467-5463
Editor: Oxford University Press
DOI: 10.1093/bib/bbae296

MINTyper: an outbreak-detection method for accurate and rapid SNP typing of clonal clusters with noisy long reads

Autores: Malte B Hallgren, Søren Overballe-Petersen, Ole Lund, Henrik Hasman, Philip T L C Clausen
Publicado en: Biology Methods and Protocols, Edición 6/1, 2021, ISSN 2396-8923
Editor: Oxford Academic
DOI: 10.1093/biomethods/bpab008

Experimental Infection of Mink with SARS-COV-2 Omicron Variant and Subsequent Clinical Disease

Autores: Jenni Virtanen, Kirsi Aaltonen, Kristel Kegler, Vinaya Venkat, Thanakorn Niamsap, Lauri Kareinen, Rasmus Malmgren, Olga Kivelä, Nina Atanasova, Pamela Österlund, Teemu Smura, Antti Sukura, Tomas Strandin, Lara Dutra, Olli Vapalahti, Heli Nordgren, Ravi Kant and Tarja Sironen
Publicado en: Emerging Infectious Diseases, Edición 28/6, 2022, ISSN 1080-6040
Editor: US National Center for Infectious Diseases
DOI: 10.3201/eid2806.220328

Intranasal inhibitor broadly blocks SARS-CoV-2 including recent highly immunoevasive Omicron subvariants

Autores: Anna R. Mäkelä, Hasan Uğurlu, Liina Hannula, Ravi Kant, Petja Salminen, Riku Fagerlund, Sanna Mäki, Anu Haveri, Tomas Strandin, Lauri Kareinen, Jussi Hepojoki, Suvi Kuivanen, Lev Levanov, Arja Pasternack, Rauno A. Naves, Olli Ritvos, Pamela Österlund, Tarja Sironen, Olli Vapalahti, Anja Kipar, Juha T. Huiskonen, Ilona Rissanen and Kalle Saksela
Publicado en: BioRxiv, 2022, ISSN 2692-8205
Editor: Cold Spring Harbor Laboratory Press
DOI: 10.1101/2021.12.28.474326

Iceland as Stepping Stone for Spread of Highly Pathogenic Avian Influenza Virus between Europe and North America

Autores: Anne Günther, Oliver Krone, Vilhjalmur Svansson, Anne Pohlmann, Jacqueline King, Gunnar Thor Hallgrimsson, Kristinn Haukur Skarphéðinsson, Heiða Sigurðardóttir, Stefán Ragnar Jónsson, Martin Beer, Brigitte Brugger, Timm Harder
Publicado en: Emerging Infectious Diseases, Edición 28/12, 2022, ISSN 1080-6040
Editor: US National Center for Infectious Diseases
DOI: 10.3201/eid2812.221086

West Nile Virus spread in Europe - phylogeographic pattern analysis and key drivers

Autores: Lu Lu, Feifei Zhang, Bas B. Oude Munnink, Emmanuelle Munger, Reina S. Sikkema, Styliani Pappa, Katerina Tsioka, Alessandro Sinigaglia, Emanuela Dal Molin, Barbara B. Shih, Anne Günther, Anne Pohlmann, Martin Beer, Rachel A. Taylor, Frederic Bartumeus, Mark Woolhouse, Frank M. Aarestrup, Luisa Barzon, Anna Papa and Samantha Lycett
Publicado en: BioRxiv, 2022, ISSN 2692-8205
Editor: Cold Spring Harbor Laboratory Press
DOI: 10.1101/2022.11.10.515886

SARS-CoV-2 Neutralizing Human Antibodies Protect Against Lower Respiratory Tract Disease in a Hamster Model

Autores: Bart L Haagmans, Danny Noack, Nisreen M A Okba, Wentao Li, Chunyan Wang, Theo Bestebroer, Rory de Vries, Sander Herfst, Dennis de Meulder, Elwin Verveer, Peter van Run, Mart M Lamers, Bart Rijnders, Casper Rokx, Frank van Kuppeveld, Frank Grosveld, Dubravka Drabek, Corine Geurts van Kessel, Marion Koopmans, Berend Jan Bosch, Thijs Kuiken, Barry Rockx
Publicado en: The Journal of Infectious Diseases, Edición 223/12, 2021, Página(s) 2020-2028, ISSN 0022-1899
Editor: University of Chicago Press
DOI: 10.1093/infdis/jiab289

Spa diversity and genetic characterization of t127 methicillin-resistant Staphylococcus aureus in a tertiary Greek hospital

Autores: Katerina Tsergouli, Theodoros Karampatakis, Konstantina Kontopoulou, Styliani Pappa, Parthena Kampouridou, Georgia Kallasidou, Katerina Tsioka, Sophia Zotou, Εleftheria-Eugenia Farmaki, Charalampos Kotzamanidis and Anna Papa
Publicado en: Acta Microbiologica et immunologica Hungarica, Edición 69/3, 2022, ISSN 1217-8950
Editor: Akademiai Kiado
DOI: 10.1556/030.2022.01825

The increasing complexity of arbovirus serology: An in-depth systematic review on cross-reactivity

Autores: Louella M. R. Kasbergen, David F. Nieuwenhuijse, Erwin de Bruin, Reina S. Sikkema, Marion P. G. Koopmans
Publicado en: PLOS Neglected Tropical Diseases, Edición 17, 2023, Página(s) e0011651, ISSN 1935-2735
Editor: PLOS
DOI: 10.1371/journal.pntd.0011651

Risks of SARS-CoV-2 transmission between free-ranging animals and captive mink in the Netherlands

Autores: Reina S. Sikkema, Lineke Begeman, René Janssen, Wendy J. Wolters, Corine Geurtsvankessel, Erwin de Bruin, Renate W. Hakze-van der Honing, Phaedra Eblé, Wim H.M. van der Poel, Judith M.A. van den Brand, Roy Slaterus, Maurice La Haye, Marion P.G. Koopmans, Francisca Velkers and Thijs Kuiken
Publicado en: Transboundary and Emerging Diseases, 2022, ISSN 1865-1674
Editor: Blackwell-Wiss.-Verl
DOI: 10.1111/tbed.14686

Rapid spread of a new West Nile virus lineage 1 associated with increased risk of neuroinvasive disease during a large outbreak in northern Italy, 2022: One Health analysis.

Autores: Barzon L, Pacenti M, Montarsi F, Fornasiero D, Gobbo F, Quaranta E, Monne I, Fusaro A, Volpe A, Sinigaglia A, Riccetti S, Molin ED, Satto S, Lisi V, Gobbi F, Galante S, Feltrin G, Valeriano V, Favero L, Russo F, Mazzucato M, Bortolami A, Mulatti P, Terregino C, Capelli G.
Publicado en: Journal of Travel Medicine, 2022, ISSN 1195-1982
Editor: B.C. Decker Inc.
DOI: 10.1093/jtm/taac125

Autoantibodies neutralizing type I IFNs underlie West Nile virus encephalitis in ∼40% of patients

Autores: Adrian Gervais, Francesca Rovida, Maria Antonietta Avanzini, Stefania Croce, Astrid Marchal, Shih-Ching Lin, Alessandro Ferrari, Christian W. Thorball, Orianne Constant, Tom Le Voyer, Quentin Philippot, Jérémie Rosain, Micol Angelini, Malena Pérez Lorenzo, Lucy Bizien, Cristian Achille, Francesca Trespidi, Elisa Burdino, Irene Cassaniti, Daniele Lilleri, Chiara Fornara, José Camilla Sammartino
Publicado en: Journal of Experimental Medicine, Edición 220, 2023, ISSN 0022-1007
Editor: Rockefeller University Press
DOI: 10.1084/jem.20230661

Assessing West Nile virus (WNV) and Usutu virus (USUV) exposure in bird ringers in the Netherlands: a high-risk group for WNV and USUV infection?

Autores: Chiara de Bellegarde de Saint Lary, Louella M.R. Kasbergen, Patricia C.J.L. Bruijning-Verhagen, Henk van der Jeugd, Felicity Chandler, Boris M. Hogema, Hans L. Zaaijer, Fiona R.M. van der Klis, Luisa Barzon, Erwin de Bruin, Quirine ten Bosch, Marion P.G. Koopmans, Reina S. Sikkema, Leo G. Visser
Publicado en: One Health, Edición 16, 2024, Página(s) 100533, ISSN 2352-7714
Editor: Elsevier
DOI: 10.1016/j.onehlt.2023.100533

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