Intelligent Collections of Food Legumes Genetic Resources for European Agrofood Systems

Project Information

INCREASE

Grant agreement ID: 862862

DOI 10.3030/862862

EC signature date 2 May 2020

Start date 1 May 2020

End date 30 April 2026

Funded under

• SOCIETAL CHALLENGES - Food security, sustainable agriculture and forestry, marine, maritime and inland water research, and the bioeconomy

Total cost € 8 826 824,50

EU contribution € 6 999 999,50

Coordinated by

UNIVERSITA POLITECNICA DELLE MARCHE
Italy

Deliverables

Other (3)

Central data management infrastructure implemented
Final computer vision & deep learning library released
Blockchain approach established and distributed infrastructure released

Documents, reports (3)

Stakeholder Consortium agreement

Stakeholder Consortium Agreement

Workflow on place for assignment of DOIs as unique identifiert

Workflow on place for assignment of DOIs as unique identifiers

Development of different core collections (R-CORE, T-CORE, H-CORE) for all the species

Development of different core collections RCORE TCORE HCORE for all the species

Websites, patent fillings, videos etc. (3)

Public project website
Audio-visual material on food legumes GenRes

Audiovisual material on food legumes GenRes

Audio-visual material for citizen science experiment

Audiovisual material for citizen science experiment

Publications

Peer reviewed articles (14)

Intelligent Characterization of Lentil Genetic Resources: Evolutionary History, Genetic Diversity of Germplasm, and the Need for Well-Represented Collections

Author(s): Azalea Guerra-García, Tania Gioia, Eric von Wettberg, Giuseppina Logozzo, Roberto Papa, Elena Bitocchi, Kirstin E. Bett
Published in: Current Protocols, 2021, ISSN 2691-1299
Publisher: John Wiley & Sons
DOI: 10.1002/cpz1.134

Towards the Development, Maintenance and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Chickpea

Author(s): Lorenzo Rocchetti, Tania Gioia, Giuseppina Logozzo, Creola Brezeanu, Luis Guasch Pereira, Lucía De la Rosa, Stefania Marzario, Alice Pieri, Alisdair R. Fernie, Saleh Alseekh, Karolina Susek, Douglas R. Cook, Rajeev K. Varshney, Shiv Kumar Agrawal, Aladdin Hamwieh, Elena Bitocchi, Roberto Papa
Published in: Current Protocols, 2022, ISSN 2691-1299
Publisher: John Wiley & Sons
DOI: 10.1002/cpz1.371

Expanding our coverage: Strategies to detect a greater range of metabolites

Author(s): Saleh Alseekh and Alisdair R. Fernie
Published in: Current Opinion in Plant Biology, 2023, ISSN 1369-5266
Publisher: Elsevier BV
DOI: 10.1016/j.pbi.2022.102335

Towards Development, Maintenance, and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Lupins

Author(s): Magdalena Kroc, Magdalena Tomaszewska, Katarzyna Czepiel, Elena Bitocchi, Markus Oppermann, Kerstin Neumann, Luis Guasch, Elisa Bellucci, Saleh Alseekh, Andreas Graner, Alisdair R. Fernie, Roberto Papa, Karolina Susek
Published in: Current Protocols, 2021, ISSN 2691-1299
Publisher: John Wiley & Sons
DOI: 10.1002/cpz1.191

The INCREASE project: Intelligent Collections of food-legume genetic resources for European agrofood systems

Author(s): Elisa Bellucci, Orlando Mario Aguilar, Saleh Alseekh, Kirstin Bett, Creola Brezeanu, Douglas Cook, Lucía De la Rosa, Massimo Delledonne, Denise F. Dostatny, Juan J Ferreira, Valérie Geffroy, Sofia Ghitarrini, Magdalena Kroc, Shiv Kumar Agrawal, Giuseppina Logozzo, Mario Marino, Tristan Mary-Huard, Phil McClean, Vladimir Meglič, Tamara Messer, Frédéric Muel, Laura Nanni, Kerstin Neumann, Filip
Published in: The Plant Journal, 2021, ISSN 1365-313X
Publisher: John Wiley & Sons
DOI: 10.1111/tpj.15472

CRISPR/Cas9-Mediated Enrichment Coupled to Nanopore Sequencing Provides a Valuable Tool for the Precise Reconstruction of Large Genomic Target Regions

Author(s): Giulia Lopatriello, Simone Maestri, Massimiliano Alfano, Roberto Papa, Valerio Di Vittori, Luca De Antoni, Elisa Bellucci, Alice Pieri, Elena Bitocchi, Massimo Delledonne, Marzia Rossato
Published in: International Journal of Molecular Sciences, 2023, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms24021076

CRISPR-Cas9-based repeat depletion for the high-throughput genotyping of complex plant genomes

Author(s): Marzia Rossato, Luca Marcolungo, Luca De Antoni, Giulia Lopatriello, Elisa Bellucci, Gaia Cortinovis, Giulia Frascarelli, Laura Nanni, Elena Biotcchi, Valerio Di Vittori, Leonardo Vincenzi, Filippo Lucchini, Kirstin E Bett, Larissa Remsay, David Konkin, Massimo Delledonne and Roberto Papa
Published in: Genome Research, 2023, ISSN 1940-3402
Publisher: Cold Spring Harbor
DOI: 10.1101/gr.277628.122

Transcriptomic and metabolomic analysis reveals that symbiotic nitrogen fixation enhances drought resistance in common bean

Author(s): Cristina M. López, Saleh Alseekh, Fernando Torralbo, Félix J. Martínez Rivas, Alisdair R. Fernie, Francisco Amil-Ruiz, Josefa M. Alamillo
Published in: Journal of Experimental Botany, 2023, ISSN 1465-3915
Publisher: Oxford University Press
DOI: 10.1093/jxb/erad083

Nodulation competitiveness and diversification of symbiosis genes in common beans from the American centers of domestication

Author(s): O. Mario Aguilar, Mónica M. Collavino & Ulises Mancini
Published in: Scientific Reports, 2022, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-022-08720-0

Towards the Development, Maintenance, and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Common Bean

Author(s): Gaia Cortinovis, Markus Oppermann, Kerstin Neumann, Andreas Graner, Tania Gioia, Marco Marsella, Saleh Alseekh, Alisdair R. Fernie, Roberto Papa, Elisa Bellucci, Elena Bitocchi
Published in: Current Protocols, 2021, ISSN 2691-1299
Publisher: John Wiley & Sons
DOI: 10.1002/cpz1.133

Shift in beneficial interactions during crop evolution

Author(s): Hélène Fréville, Germain Montazeaud, Emma Forst, Jacques David, Roberto Papa, Maud I. Tenaillon
Published in: Evolutionary Applications, 2022, ISSN 2691-1299
Publisher: John Wiley & Sons
DOI: 10.1111/eva.13390

Clustered regularly interspaced short palindromic repeats-CRISPR-associated protein and hairy roots a perfect match for gene functional analysis and crop improvement

Author(s): Josefa M. Alamillo, Cristina M. López, Félix J. Martínez Rivas, Fernando Torralbo, Mustafa Bulut, Saleh Alseekh
Published in: Current Opinion in Biotechnology, 2023, ISSN 1879-0429
Publisher: Elsevier
DOI: 10.1016/j.copbio.2022.102876

Legume byproducts as ingredients for food applications: Preparation, nutrition, bioactivity, and techno-functional properties

Author(s): Ancuta Nartea, Anastasiya Kuhalskaya, Benedetta Fanesi, Oghenetega Lois Orhotohwo, Karolina Susek, Lorenzo Rocchetti, Valerio Di Vittori, Elena Bitocchi, Deborah Pacetti, Roberto Papa
Published in: Comprehensive Reviews in Food Science and Food Safety, 2023, ISSN 2691-1299
Publisher: John Wiley & Sons
DOI: 10.1111/1541-4337.13137

Selection and adaptive introgression guided the complex evolutionary history of the European common bean

Author(s): Lorenzo Rocchetti, Tania Gioia, Giuseppina Logozzo, Creola Brezeanu, Luis Guasch Pereira, Lucía De la Rosa, Stefania Marzario, Alice Pieri, Alisdair R. Fernie, Saleh Alseekh, Karolina Susek, Douglas R. Cook, Rajeev K. Varshney, Shiv Kumar Agrawal, Aladdin Hamwieh, Elena Bitocchi, Roberto Papa
Published in: Current Protocols, 2022, ISSN 2691-1299
Publisher: John Wiley & Sons
DOI: 10.1038/s41467-023-37332-z