Intelligent Collections of Food Legumes Genetic Resources for European Agrofood Systems

Rezultaty

Central data management infrastructure implemented
Final computer vision & deep learning library released
Blockchain approach established and distributed infrastructure released

Stakeholder Consortium agreement

Stakeholder Consortium Agreement

Workflow on place for assignment of DOIs as unique identifiert

Workflow on place for assignment of DOIs as unique identifiers

Development of different core collections (R-CORE, T-CORE, H-CORE) for all the species

Development of different core collections RCORE TCORE HCORE for all the species

Public project website
Audio-visual material on food legumes GenRes

Audiovisual material on food legumes GenRes

Audio-visual material for citizen science experiment

Audiovisual material for citizen science experiment

Publikacje

Intelligent Characterization of Lentil Genetic Resources: Evolutionary History, Genetic Diversity of Germplasm, and the Need for Well-Represented Collections

Autorzy: Azalea Guerra-García, Tania Gioia, Eric von Wettberg, Giuseppina Logozzo, Roberto Papa, Elena Bitocchi, Kirstin E. Bett
Opublikowane w: Current Protocols, 2021, ISSN 2691-1299
Wydawca: John Wiley & Sons
DOI: 10.1002/cpz1.134

Towards the Development, Maintenance and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Chickpea

Autorzy: Lorenzo Rocchetti, Tania Gioia, Giuseppina Logozzo, Creola Brezeanu, Luis Guasch Pereira, Lucía De la Rosa, Stefania Marzario, Alice Pieri, Alisdair R. Fernie, Saleh Alseekh, Karolina Susek, Douglas R. Cook, Rajeev K. Varshney, Shiv Kumar Agrawal, Aladdin Hamwieh, Elena Bitocchi, Roberto Papa
Opublikowane w: Current Protocols, 2022, ISSN 2691-1299
Wydawca: John Wiley & Sons
DOI: 10.1002/cpz1.371

Expanding our coverage: Strategies to detect a greater range of metabolites

Autorzy: Saleh Alseekh and Alisdair R. Fernie
Opublikowane w: Current Opinion in Plant Biology, 2023, ISSN 1369-5266
Wydawca: Elsevier BV
DOI: 10.1016/j.pbi.2022.102335

Towards Development, Maintenance, and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Lupins

Autorzy: Magdalena Kroc, Magdalena Tomaszewska, Katarzyna Czepiel, Elena Bitocchi, Markus Oppermann, Kerstin Neumann, Luis Guasch, Elisa Bellucci, Saleh Alseekh, Andreas Graner, Alisdair R. Fernie, Roberto Papa, Karolina Susek
Opublikowane w: Current Protocols, 2021, ISSN 2691-1299
Wydawca: John Wiley & Sons
DOI: 10.1002/cpz1.191

The INCREASE project: Intelligent Collections of food-legume genetic resources for European agrofood systems

Autorzy: Elisa Bellucci, Orlando Mario Aguilar, Saleh Alseekh, Kirstin Bett, Creola Brezeanu, Douglas Cook, Lucía De la Rosa, Massimo Delledonne, Denise F. Dostatny, Juan J Ferreira, Valérie Geffroy, Sofia Ghitarrini, Magdalena Kroc, Shiv Kumar Agrawal, Giuseppina Logozzo, Mario Marino, Tristan Mary-Huard, Phil McClean, Vladimir Meglič, Tamara Messer, Frédéric Muel, Laura Nanni, Kerstin Neumann, Filip
Opublikowane w: The Plant Journal, 2021, ISSN 1365-313X
Wydawca: John Wiley & Sons
DOI: 10.1111/tpj.15472

Challenges and Opportunities behind the Use of Herbaria in Paleogenomics Studies

Autorzy: Simone Papalini, Valerio Di Vittori, Alice Pieri, Marina Allegrezza, Giulia Frascarelli, Laura Nanni, Elena Bitocchi, Elisa Bellucci, Tania Gioia, Luis Guasch Pereira, Karolina Susek, Maud Tenaillon, Kerstin Neumann, Roberto Papa
Opublikowane w: Plants, Numer 12, 2023, Strona(/y) 3452, ISSN 2223-7747
Wydawca: MDPI AG
DOI: 10.3390/plants12193452

CRISPR/Cas9-Mediated Enrichment Coupled to Nanopore Sequencing Provides a Valuable Tool for the Precise Reconstruction of Large Genomic Target Regions

Autorzy: Giulia Lopatriello, Simone Maestri, Massimiliano Alfano, Roberto Papa, Valerio Di Vittori, Luca De Antoni, Elisa Bellucci, Alice Pieri, Elena Bitocchi, Massimo Delledonne, Marzia Rossato
Opublikowane w: International Journal of Molecular Sciences, 2023, ISSN 1422-0067
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms24021076

First Report of <i>Colletotrichum incanum</i> Causing Leaf Spots on Common Bean in Europe (Slovenia)

Autorzy: H.-J. Schroers, J. Zajc, B. Pipan, V. Meglič, E. Kovačec, M. Žerjav
Opublikowane w: Plant Disease, Numer 108, 2024, Strona(/y) 2231, ISSN 0191-2917
Wydawca: American Phytopathological Society
DOI: 10.1094/pdis-02-24-0490-pdn

CRISPR-Cas9-based repeat depletion for the high-throughput genotyping of complex plant genomes

Autorzy: Marzia Rossato, Luca Marcolungo, Luca De Antoni, Giulia Lopatriello, Elisa Bellucci, Gaia Cortinovis, Giulia Frascarelli, Laura Nanni, Elena Biotcchi, Valerio Di Vittori, Leonardo Vincenzi, Filippo Lucchini, Kirstin E Bett, Larissa Remsay, David Konkin, Massimo Delledonne and Roberto Papa
Opublikowane w: Genome Research, 2023, ISSN 1940-3402
Wydawca: Cold Spring Harbor
DOI: 10.1101/gr.277628.122

Transcriptomic and metabolomic analysis reveals that symbiotic nitrogen fixation enhances drought resistance in common bean

Autorzy: Cristina M. López, Saleh Alseekh, Fernando Torralbo, Félix J. Martínez Rivas, Alisdair R. Fernie, Francisco Amil-Ruiz, Josefa M. Alamillo
Opublikowane w: Journal of Experimental Botany, 2023, ISSN 1465-3915
Wydawca: Oxford University Press
DOI: 10.1093/jxb/erad083

Nodulation competitiveness and diversification of symbiosis genes in common beans from the American centers of domestication

Autorzy: O. Mario Aguilar, Mónica M. Collavino & Ulises Mancini
Opublikowane w: Scientific Reports, 2022, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1038/s41598-022-08720-0

Towards the Development, Maintenance, and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Common Bean

Autorzy: Gaia Cortinovis, Markus Oppermann, Kerstin Neumann, Andreas Graner, Tania Gioia, Marco Marsella, Saleh Alseekh, Alisdair R. Fernie, Roberto Papa, Elisa Bellucci, Elena Bitocchi
Opublikowane w: Current Protocols, 2021, ISSN 2691-1299
Wydawca: John Wiley & Sons
DOI: 10.1002/cpz1.133

Nutritional value and environmental footprint of muffins made with green-lentil flour

Autorzy: Rafaela Geraldo, Carla S. Santos, David Styles, Sérgio Sousa, Elisabete Pinto, Delminda Neves, Marta W. Vasconcelos
Opublikowane w: Journal of Cleaner Production, Numer 477, 2024, Strona(/y) 143826, ISSN 0959-6526
Wydawca: Elsevier BV
DOI: 10.1016/j.jclepro.2024.143826

Screening for resistance to four fungal diseases and associated genomic regions in a snap bean diversity panel

Autorzy: Ana Campa, Valérie Geffroy, Elena Bitocchi, Alicia Noly, Roberto Papa, Juan José Ferreira
Opublikowane w: Frontiers in Plant Science, Numer 15, 2024, ISSN 1664-462X
Wydawca: Frontiers Media S. A.
DOI: 10.3389/fpls.2024.1386877

Shift in beneficial interactions during crop evolution

Autorzy: Hélène Fréville, Germain Montazeaud, Emma Forst, Jacques David, Roberto Papa, Maud I. Tenaillon
Opublikowane w: Evolutionary Applications, 2022, ISSN 2691-1299
Wydawca: John Wiley & Sons
DOI: 10.1111/eva.13390

Clustered regularly interspaced short palindromic repeats-CRISPR-associated protein and hairy roots a perfect match for gene functional analysis and crop improvement

Autorzy: Josefa M. Alamillo, Cristina M. López, Félix J. Martínez Rivas, Fernando Torralbo, Mustafa Bulut, Saleh Alseekh
Opublikowane w: Current Opinion in Biotechnology, 2023, ISSN 1879-0429
Wydawca: Elsevier
DOI: 10.1016/j.copbio.2022.102876

Legume byproducts as ingredients for food applications: Preparation, nutrition, bioactivity, and techno-functional properties

Autorzy: Ancuta Nartea, Anastasiya Kuhalskaya, Benedetta Fanesi, Oghenetega Lois Orhotohwo, Karolina Susek, Lorenzo Rocchetti, Valerio Di Vittori, Elena Bitocchi, Deborah Pacetti, Roberto Papa
Opublikowane w: Comprehensive Reviews in Food Science and Food Safety, 2023, ISSN 2691-1299
Wydawca: John Wiley & Sons
DOI: 10.1111/1541-4337.13137

Engaging Precision Phenotyping to Scrutinize Vegetative Drought Tolerance and Recovery in Chickpea Plant Genetic Resources

Autorzy: Madita Lauterberg, Henning Tschiersch, Roberto Papa, Elena Bitocchi, Kerstin Neumann
Opublikowane w: Plants, Numer 12, 2023, Strona(/y) 2866, ISSN 2223-7747
Wydawca: MDPI AG
DOI: 10.3390/plants12152866

Genetic erosion within the Fabada dry bean market class revealed by high‐throughput genotyping

Autorzy: Maria Jurado, Carmen García‐Fernández, Ana Campa, Juan Jose Ferreira
Opublikowane w: The Plant Genome, Numer 16, 2024, ISSN 1940-3372
Wydawca: Crop Science Society of America
DOI: 10.1002/tpg2.20379

A comprehensive metabolomics and lipidomics atlas for the legumes common bean, chickpea, lentil and lupin

Autorzy: Mustafa Bulut, Regina Wendenburg, Elena Bitocchi, Elisa Bellucci, Magdalena Kroc, Tania Gioia, Karolina Susek, Roberto Papa, Alisdair R. Fernie, Saleh Alseekh
Opublikowane w: The Plant Journal, Numer 116, 2023, Strona(/y) 1152-1171, ISSN 0960-7412
Wydawca: Blackwell Publishing Inc.
DOI: 10.1111/tpj.16329

Adaptive gene loss in the common bean pan-genome during range expansion and domestication

Autorzy: Gaia Cortinovis, Leonardo Vincenzi, Robyn Anderson, Giovanni Marturano, Jacob Ian Marsh, Philipp Emanuel Bayer, Lorenzo Rocchetti, Giulia Frascarelli, Giovanna Lanzavecchia, Alice Pieri, Andrea Benazzo, Elisa Bellucci, Valerio Di Vittori, Laura Nanni, Juan José Ferreira Fernández, Marzia Rossato, Orlando Mario Aguilar, Peter Laurent Morrell, Monica Rodriguez, Tania Gioia, Kerstin Neumann, Juan C
Opublikowane w: Nature Communications, Numer 15, 2024, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-024-51032-2

The milpa, from Mesoamerica to present days, a multicropping traditional agricultural system serving agroecology

Autorzy: Noa Vazeux-Blumental, Domenica Manicacci, Maud Tenaillon
Opublikowane w: Comptes Rendus. Biologies, Numer 347, 2024, Strona(/y) 159-173, ISSN 1768-3238
Wydawca: Académie des sciences
DOI: 10.5802/crbiol.164

Implementation of theoretical non-photochemical quenching (NPQ(T)) to investigate NPQ of chickpea under drought stress with High-throughput Phenotyping

Autorzy: Madita Lauterberg, Henning Tschiersch, Yusheng Zhao, Markus Kuhlmann, Ingo Mücke, Roberto Papa, Elena Bitocchi, Kerstin Neumann
Opublikowane w: Scientific Reports, Numer 14, 2024, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1038/s41598-024-63372-6

Selection and adaptive introgression guided the complex evolutionary history of the European common bean

Autorzy: Lorenzo Rocchetti, Tania Gioia, Giuseppina Logozzo, Creola Brezeanu, Luis Guasch Pereira, Lucía De la Rosa, Stefania Marzario, Alice Pieri, Alisdair R. Fernie, Saleh Alseekh, Karolina Susek, Douglas R. Cook, Rajeev K. Varshney, Shiv Kumar Agrawal, Aladdin Hamwieh, Elena Bitocchi, Roberto Papa
Opublikowane w: Current Protocols, 2022, ISSN 2691-1299
Wydawca: John Wiley & Sons
DOI: 10.1038/s41467-023-37332-z

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