Resultado final
Full-cohort individual MEG brain dynamics measures at the disposal of other WPs, harmonized with Task 3.3 M36 deliverable
Fullcohort individual MEG brain dynamics measures at the disposal of other WPs harmonized with Task 33 M36 deliverable
Integrated, open source terminology versioning and management tool CTS2 compliant application shared with project partnersStakeholder Conference: Specific issues of neurodegenerative diseases: The patients’ perspective
Stakeholder Conference Specific issues of neurodegenerative diseases The patients perspective
Framework for multi-modal integrated annotations established and in useFramework for multimodal integrated annotations established and in use
Group level SEEG brain dynamics measures and analysis pipeline for SEEGShort list of candidate mechanisms to be used in personalized simulations. The short list will be explained and motivated in a dedicated Webinar that will be made publicly available
Short list of candidate mechanisms to be used in personalized simulations The short list will be explained and motivated in a dedicated Webinar that will be made publicly available
TVB human models will be made available. We will identify the biophysical terms in the TVB models that are altered in NDD as compared to healthy individuals, and in relation to cognitive statusValidated and benchmarked data fitting workflow will be provided as a software for brain model personalization
Digital atlas that maps signaling pathways on corresponding brain regions for different neurodegenerative states in humans
Initial version of full-scope containerized pipeline developed
Initial version of fullscope containerized pipeline developed
Stakeholder conference on GDPR-impactStakeholder conference on GDPRimpact
Evaluation and optimization of pipeline for practical use concludedWorkshop with policy-makers
Workshop with policymakers
Optimization and evaluation of pipeline for practical use concludedPresentations at conferences and exhibitions, organization of yearly stakeholder event, participation in science outreach events
The consortium will create a sup-page on the public project website. The VirtualBrainCloud activities will be updated permanently. In addition short summaries will be published annually (M12, M24, M36, M48) and be included in the contarctual periodic reports. The final summary will be published and submitted in project month 48.
CTS2 standard compliant interface will be released to project partnersFull-cohort MEG time series in BIDS share and analysis pipeline ready
Fullcohort MEG time series in BIDS share and analysis pipeline ready
Seamless integration of electrophysiological data workflows with TVB modelingMost appropriate RS-processing pipelines for TVB modelling finished
Most appropriate RSprocessing pipelines for TVB modelling finished
Workflows established that link progression models and TVBEstablishment of contact with relevant external stakeholders
Gateway to PRACE documentation and guidelines
Report on VBC operation report and published services on EOSC/EGI Marketplace
Report on VBC operation report and published services on EOSCEGI Marketplace
Publication of a study on deconfounding for inferenceComplete, updated semantic framework for neurodegeneration research documented
Evaluation of cross-modal atlas-based compression for machine-learning
Evaluation of crossmodal atlasbased compression for machinelearning
Deliverable: Publication of a causality study based on an instrumental variables approachReport on cloud implementation strategy applying “trusted cloud” principles
Paper manuscript describing the initial characterization of the studies, the equivalence of their variables and the summary statistics (mean, standard deviation etc.) submitted to relevant journal
Final analysis of relevant legal, ethical and regulatory framework, 2nd iteration, including a report on best practices and industry standards
Data catalogue with harmonized annotations at project
Text mining workflow to use ontologies and terminologies in OLS for information extraction of causeandeffect statements The demonstration will be delivered as a Webinar
Final VBC platform is fully integrated and validated and full documentation of its functionalitiesA functionally integrated version of VBC is evaluated for therapeutical targets
Short title: Semantically enhanced multi-viewer that embeds a newly developed TVB 3D viewer
Full title A semantically enhanced multiviewer that embeds a newly developed TVB 3D viewer that allows for integration of personalized 3D coordinates with knowledge about pathways and mechanisms in situ The deliverable for this task is a joint highranking journal publication of the teams building this environment
Validated Use Case of a brain simulation platform for NDD, usable by scientists and clinicians, for subsequent refined clinical studies towards development of therapeutic targets associated with basic physiological mechanisms"Webinar with demonstration of personalized simulation (""case studies"") using the integrated model in TVB"
Webinar with demonstration of personalized simulation (“case studies”) using the integrated model in TVB
Short title: Health & lifestyle recommendation system implementedFull title: Health & lifestyle recommendation system implemented in the VirtualBrainCloud patient interface App; compiled and edited recommendation manual including early and late factors with impact on neurodegenerative diseases; dissemination to clinics and patient groups
Publicaciones
Autores:
Colin Birkenbihl; Colin Birkenbihl; Mohammad Asif Emon; Mohammad Asif Emon; Henri A. Vrooman; Sarah Westwood; Simon Lovestone; Martin Hofmann-Apitius; Martin Hofmann-Apitius; Holger Fröhlich; Holger Fröhlich
Publicado en:
The E P M A Journal, Edición 1, 2020, ISSN 1878-5077
Editor:
BioMed Central
DOI:
10.1007/s13167-020-00216-z
Autores:
Justin W.M. Domhof; Simon B. Eickhoff; Oleksandr V. Popovych
Publicado en:
NeuroImage 257, 119321 (2022). doi:10.1016/j.neuroimage.2022.119321, Edición 13, 2022, ISSN 1053-8119
Editor:
Academic Press
DOI:
10.1016/j.neuroimage.2022.119321
Autores:
Clément Mantoux; Baptiste Couvy-Duchesne; Federica Cacciamani; Stéphane Epelbaum; Stanley Durrleman; Stéphanie Allassonnière
Publicado en:
Entropy, Edición 2, 2021, ISSN 1099-4300
Editor:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/e23040490
Autores:
Justin W. M. Domhof; Kyesam Jung; Simon B. Eickhoff; Oleksandr V. Popovych
Publicado en:
Network neuroscience, Edición 5(3), 2021, Página(s) 798–830, ISSN 2472-1751
Editor:
MIT Press Journals
DOI:
10.1162/netn_a_00202
Autores:
Hashemi, M., Vattikonda, A.N., Sip, V., Diaz-Pier, S., Peyser, A., Wang, H., Guye, M., Bartolomei, F., Woodman, M.M. and Jirsa, V.K.
Publicado en:
PLoS computational biology, 2021, ISSN 1553-7358
Editor:
Public Library of Science
DOI:
10.1371/journal.pcbi.1009129
Autores:
Oleksandr V. Popovych, Kyesam Jung, Thanos Manos, Sandra Diaz-Pier, Felix Hoffstaedter, Jan Schreiber, B.T. Thomas Yeo, Simon B. Eickhoff
Publicado en:
NeuroImage, Edición 236, 2021, Página(s) 118201, ISSN 1053-8119
Editor:
Academic Press
DOI:
10.1016/j.neuroimage.2021.118201
Autores:
Koval, Igor; Bône, Alexandre; Louis, Maxime; Lartigue, Thomas; Bottani, Simona; Marcoux, Arnaud; Samper-Gonzalez, Jorge; Burgos, Ninon; Charlier, Benjamin; Bertrand, Anne; Epelbaum, Stéphane; Colliot, Olivier; Allassonnière, Stéphanie; Durrleman, Stanley
Publicado en:
EISSN: 2045-2322, Edición 2, 2021, ISSN 2045-2322
Editor:
Nature Publishing Group
DOI:
10.1038/s41598-021-87434-1
Autores:
Bône, Alexandre; Colliot, Olivier; Durrleman, Stanley
Publicado en:
International Journal of Computer Vision, Edición 2, 2020, ISSN 0920-5691
Editor:
Kluwer Academic Publishers
DOI:
10.1007/s11263-020-01343-w
Autores:
Birkenbihl, Colin; Salimi, Yasamin; Fröhlich, Holger
Publicado en:
Fraunhofer SCAI, Edición 2, 2021, ISSN 1552-5279
Editor:
Wiley
DOI:
10.1002/alz.12387
Autores:
Kyesam Jung; Simon B. Eickhoff; Oleksandr V. Popovych
Publicado en:
NeuroImage, Edición 237, 2021, Página(s) 118176, ISSN 1053-8119
Editor:
Academic Press
DOI:
10.1016/j.neuroimage.2021.118176
Autores:
Demian Battaglia; Thomas Boudou; Thomas Boudou; Enrique C. A. Hansen; Enrique C. A. Hansen; Diego Lombardo; Sabrina Chettouf; Sabrina Chettouf; Andreas Daffertshofer; Anthony R. McIntosh; Joelle Zimmermann; Petra Ritter; Viktor K. Jirsa
Publicado en:
"NeuroImage, Elsevier, 2020, 222, pp.117156. ⟨10.1016/j.neuroimage.2020.117156⟩", Edición 2, 2020, ISSN 1053-8119
Editor:
Academic Press
DOI:
10.1016/j.neuroimage.2020.117156
Autores:
Michael Hanke; Franco Pestilli; Adina Wagner; Christopher J. Markiewicz; Jean-Baptiste Poline; Yaroslav O. Halchenko
Publicado en:
Neuroforum, 2021, ISSN 2363-7013
Editor:
Walter de Gruyter GmbH
DOI:
10.1515/nf-2020-0037
Autores:
Yaroslav O. Halchenko, Kyle Meyer, Benjamin Poldrack, Debanjum Singh Solanky, Adina S. Wagner, Jason Gors, Dave MacFarlane,Dorian Pustina, Vanessa Sochat, Satrajit S. Ghosh, Christian Mönch, Christopher J. Markiewicz, Laura Waite, Ilya Shlyakhter,Alejandro de la Vega, Soichi Hayashi, Christian Olaf Häusler, Jean-Baptiste Poline, Tobias Kadelka, Kusti Skytén, DorotaJ arecka, David Kennedy, Ted S
Publicado en:
The Journal of Open Source Software, 2021, ISSN 2475-9066
Editor:
IGI Global Publishing
DOI:
10.21105/joss.03262
Autores:
Monica Roascio, Andrea Canessa, Rosella Trò, Pietro Mattioli, Francesco Famà, Laura Giorgetti, Nicola Girtler, Beatrice Orso, Silvia Morbelli, Flavio Nobili, Dario Arnaldi, Gabriele Arnulfo
Publicado en:
Sleep, 2021, ISSN 0161-8105
Editor:
The American Academy of Sleep Medicine
DOI:
10.1093/sleep/zsab232
Autores:
Diogo Santos-Pata; Adrián F. Amil; Ivan Georgiev Raikov; César Rennó-Costa; Anna Mura; Ivan Soltesz; Paul F.M.J. Verschure
Publicado en:
iScience, Vol 24, Iss 5, Pp 102501- (2021), Edición 2, 2021, ISSN 2589-0042
Editor:
Cell Press
DOI:
10.1016/j.isci.2021.102501
Autores:
Jérôme Dockès; Russell A. Poldrack; Romain Primet; Hande Gözükan; Tal Yarkoni; Fabian M. Suchanek; Bertrand Thirion; Gaël Varoquaux
Publicado en:
2020, Edición 2, 2020, ISSN 2050-084X
Editor:
eLife Sciences Publications
DOI:
10.7554/elife.53385
Autores:
Franziska Scheibe; Franziska Scheibe; Wolf-Julian Neumann; Catharina Lange; Michael Scheel; Christian Furth; Martin Köhnlein; Philipp Mergenthaler; Jörg Schultze‐Amberger; Paul Triebkorn; Petra Ritter; Andrea A. Kühn; Andreas Meisel
Publicado en:
European Journal of Neurology, Edición 2, 2021, ISSN 1468-1331
Editor:
Wiley
DOI:
10.1111/ene.14326
Autores:
Eickhoff, Claudia R; Hoffstaedter, Felix; Caspers, Julian; Reetz, Kathrin; Mathys, Christian; Dogan, Imis; Amunts, Katrin; Schnitzler, Alfons; Eickhoff, Simon B
Publicado en:
Brain communications, 2021, ISSN 2632-1297
Editor:
Oxford University Press on behalf of the Guarantors of Brain
DOI:
10.1093/braincomms/fcab191
Autores:
Thomas Lartigue; Simona Bottani; Stephanie Baron; Olivier Colliot; Stanley Durrleman; Stéphanie Allassonnière
Publicado en:
"IEEE Transactions on Pattern Analysis and Machine Intelligence, Institute of Electrical and Electronics Engineers, 2021, 43 (9), pp.3196-3213. ⟨10.1109/TPAMI.2020.2980542⟩", Edición 2, 2021, ISSN 0162-8828
Editor:
Institute of Electrical and Electronics Engineers
DOI:
10.1109/tpami.2020.2980542
Autores:
F. Scheibe, W. J. Neumann, C. Lange, M. Scheel, C. Furth, M. Köhnlein, P. Mergenthaler, J. Schultze‐Amberger, P. Triebkorn, P. Ritter, A. A. Kühn, A. Meisel
Publicado en:
European Journal of Neurology, 2020, ISSN 1351-5101
Editor:
Blackwell Publishing Inc.
DOI:
10.1111/ene.14326
Autores:
Sabrina Chettouf, Laura M. Rueda-Delgado, Ralph de Vries, Petra Ritter, Andreas Daffertshofer
Publicado en:
Neuroscience & Biobehavioral Reviews, Edición 113, 2020, Página(s) 39-50, ISSN 0149-7634
Editor:
Pergamon Press Ltd.
DOI:
10.1016/j.neubiorev.2020.03.002
Autores:
Kelly Shen, Gleb Bezgin, Michael Schirner, Petra Ritter, Stefan Everling, Anthony R. McIntosh
Publicado en:
Scientific Data, Edición 6/1, 2019, ISSN 2052-4463
Editor:
Springer Nature
DOI:
10.1038/s41597-019-0129-z
Autores:
Leon Stefanovski, Paul Triebkorn, Andreas Spiegler, Margarita-Arimatea Diaz-Cortes, Ana Solodkin, Viktor Jirsa, Anthony Randal McIntosh, Petra Ritter
Publicado en:
Frontiers in Computational Neuroscience, Edición 13, 2019, ISSN 1662-5188
Editor:
Frontiers Research Foundation
DOI:
10.3389/fncom.2019.00054
Autores:
Hannelore Aerts, Michael Schirner, Thijs Dhollander, Ben Jeurissen, Eric Achten, Dirk Van Roost, Petra Ritter, Daniele Marinazzo
Publicado en:
NeuroImage, Edición 213, 2020, Página(s) 116738, ISSN 1053-8119
Editor:
Academic Press
DOI:
10.1016/j.neuroimage.2020.116738
Autores:
Russell A Poldrack, Franklin Feingold, Michael J Frank, Padraig Gleeson, Gilles de Hollander, Quentin J. M. Huys, Bradley C. Love, Christopher J. Markiewicz, Rosalyn Moran, Petra Ritter, Timothy T. Rogers, Brandon M. Turner, Tal Yarkoni, Ming Zhan, Jonathan D. Cohen
Publicado en:
Computational Brain & Behavior, Edición 2/3-4, 2019, Página(s) 229-232, ISSN 2522-0861
Editor:
Springer Nature
DOI:
10.1007/s42113-019-00062-x
Autores:
Vera Röhr, Rico Berner, Ewandson L. Lameu, Oleksandr V. Popovych, Serhiy Yanchuk
Publicado en:
PLOS ONE, Edición 14/11, 2019, Página(s) e0225094, ISSN 1932-6203
Editor:
Public Library of Science
DOI:
10.1371/journal.pone.0225094
Autores:
M. Hashemi, A.N. Vattikonda, V. Sip, M. Guye, F. Bartolomei, M.M. Woodman, V.K. Jirsa
Publicado en:
NeuroImage, Edición 217, 2020, Página(s) 116839, ISSN 1053-8119
Editor:
Academic Press
DOI:
10.1016/j.neuroimage.2020.116839
Autores:
Diogo Santos-Pata, Riccardo Zucca, Héctor López-Carral, Paul F.M.J. Verschure
Publicado en:
Neural Networks, Edición 119, 2019, Página(s) 66-73, ISSN 0893-6080
Editor:
Pergamon Press Ltd.
DOI:
10.1016/j.neunet.2019.06.011
Autores:
J.-Y. Puigbò, X. D. Arsiwalla, M. A. González-Ballester, P. F. M. J. Verschure
Publicado en:
Molecular Neurobiology, Edición 57/1, 2020, Página(s) 139-149, ISSN 0893-7648
Editor:
Humana Press, Inc.
DOI:
10.1007/s12035-019-01764-w
Autores:
Roberta Armignacco; T. Lartigue; Anne Jouinot; Amandine Septier; Mario Neou; C. Gaspar; Karine Perlemoine; Lucas Bouys; Leah T. Braun; Anna Riester; S. Allassonnière; Maria-Christina Zennaro; Martin Reincke; Jérôme Bertherat; F Beuschlein; Guillaume Assié
Publicado en:
https://hal.archives-ouvertes.fr/hal-03035962, Edición 2, 2020, ISSN 0003-4266
Editor:
Elsevier Masson
DOI:
10.1016/j.ando.2020.07.117
Autores:
Wischnewski, Kevin J.; Eickhoff, Simon B.; Jirsa, Viktor K.; Popovych, Oleksandr V.
Publicado en:
Scientific Reports, Edición 30, 2022, ISSN 2045-2322
Editor:
Nature Publishing Group
DOI:
10.1038/s41598-022-07860-7
Autores:
Colin Birkenbihl; Colin Birkenbihl; Yasamin Salimi; Yasamin Salimi; Daniel Domingo-Fernández; Daniel Domingo-Fernández; Simon Lovestone; Holger Fröhlich; Holger Fröhlich; Martin Hofmann-Apitius; Martin Hofmann-Apitius; Japanese Alzheimer's Disease Neuroimaging Initiative
Publicado en:
Alzheimer's & Dementia : Translational Research & Clinical Interventions, Edición 1, 2020, ISSN 1552-5279
Editor:
Wiley
DOI:
10.1002/trc2.12102
Autores:
Fulvia Palesi; Fulvia Palesi; Roberta Maria Lorenzi; Claudia Casellato; Petra Ritter; Petra Ritter; Viktor Jirsa; Claudia A.M. Gandini Wheeler-Kingshott; Claudia A.M. Gandini Wheeler-Kingshott; Claudia A.M. Gandini Wheeler-Kingshott; Egidio D’Angelo; Egidio D’Angelo
Publicado en:
Frontiers in Cellular Neuroscience, Vol 14 (2020), Edición 2, 2020, ISSN 1662-5102
Editor:
Frontiers Research Foundation
DOI:
10.3389/fncel.2020.00240
Autores:
Leon Stefanovski; Leon Stefanovski; Paul Triebkorn; Paul Triebkorn; Andreas Spiegler; Andreas Spiegler; Margarita-Arimatea Diaz-Cortes; Margarita-Arimatea Diaz-Cortes; Margarita-Arimatea Diaz-Cortes; Ana Solodkin; Viktor Jirsa; Anthony Randal McIntosh; Petra Ritter; Petra Ritter; Petra Ritter; for the Alzheimer's Disease Neuroimaging Initiative
Publicado en:
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6700386/, Edición 2, 2020, ISSN 1662-5188
Editor:
Frontiers Research Foundation
DOI:
10.17169/refubium-25500
Autores:
Adina Wagner; Laura Waite; Małgorzata Wierzba; Felix Hoffstaedter; Alexander Q. Waite; Benjamin Poldrack; Simon B. Eickhoff; Michael Hanke
Publicado en:
Scientific data 9(1), 80 (2022). doi:10.1038/s41597-022-01163-2, Edición 33, 2022, ISSN 2052-4463
Editor:
Nature Publishing Group
DOI:
10.1101/2021.10.12.464122
Autores:
Till F. M. Andlauer; Thomas W. Mühleisen; Felix Hoffstaedter; Alexander Teumer; Katharina Wittfeld; Anja Teuber; Céline S. Reinbold; Dominik Grotegerd; Robin Bülow; Svenja Caspers; Udo Dannlowski; Stefan Herms; Per Hoffmann; Tilo Kircher; Heike Minnerup; Susanne Moebus; Igor Nenadić; Henning Teismann; Uwe Völker; Amit Etkin; Klaus Berger; Hans J. Grabe; Markus M. Nöthen; Katrin Amunts; Simon
Publicado en:
Translational Psychiatry, Vol 11, Iss 1, Pp 1-13 (2021), Edición 2, 2021, ISSN 2158-3188
Editor:
Nature Publishing Group
DOI:
10.1038/s41398-021-01317-7
Autores:
Gianluca Susi; Pilar Garcés; Emanuele Paracone; Alessandro Cristini; Mario Salerno; Fernando Maestú; Ernesto Pereda
Publicado en:
Scientific Reports, Vol 11, Iss 1, Pp 1-17 (2021), Edición 1, 2021, ISSN 2045-2322
Editor:
Nature Publishing Group
DOI:
10.1038/s41598-021-91513-8
Autores:
Kamalaker Dadi; Gaël Varoquaux; Antonia Machlouzarides-Shalit; Krzysztof J. Gorgolewski; Demian Wassermann; Bertrand Thirion; Arthur Mensch
Publicado en:
2020, Edición 2, 2020, ISSN 1053-8119
Editor:
Academic Press
DOI:
10.1016/j.neuroimage.2020.117126
Autores:
Thomas Lartigue; Stanley Durrleman; Stéphanie Allassonnière
Publicado en:
2020, Edición 2, 2020, ISSN 2331-8422
Editor:
Cornell University
DOI:
10.1007/s42979-021-00865-5
Autores:
Schirner, Michael; Domide, Lia; Perdikis, Dionysios; Triebkorn, Paul; Stefanovski, Leon; Pai, Roopa; Popa, Paula; Valean, Bogdan; Palmer, Jessica; Langford, Chloê; Blickensdörfer, André; van der Vlag, Michiel; Diaz-Pier, Sandra; Peyser, Alexander; Klijn, Wouter; Pleiter, Dirk; Nahm, Anne; Schmid, Oliver; Woodman, Marmaduke; Zehl, Lyuba; Fousek, Jan; Petkoski, Spase; Kusch, Lionel; Hashemi, Meys
Publicado en:
ArXiv, 2021
Editor:
Cornell University
Autores:
Paul Triebkorn; Joelle Zimmermann; Leon Stefanovski; Dipanjan Roy; Ana Solodkin; Viktor K. Jirsa; Gustavo Deco; Michael Breakspear; Anthony R. McIntosh; Petra Ritter
Publicado en:
Edición 2, 2020, ISBN 978-0-879699-41-3
Editor:
Cold Spring Habor Laboratory
DOI:
10.1101/2020.03.26.009795
Autores:
Paul F. M. J. Verschure; Diogo Santos-Pata
Publicado en:
bioRxiv, Edición 7, 2020
Editor:
Cold Spring Harbor Laboratory
DOI:
10.1101/2020.01.11.902742
Autores:
Lartigue, Thomas; Durrleman, Stanley; Allassonnière, Stéphanie
Publicado en:
2020, Edición 2, 2021, ISSN 2331-8422
Editor:
Cornell University
Autores:
Diogo Santos-Pata, Belen Rubio Ballester, Riccardo Zucca, Carlos Stefano Filho, Sara Regina Almeida, Li Li Min, Gabriela Castellano, Paul FMJ Verschure
Publicado en:
medRxiv, 2020
Editor:
CSHL
DOI:
10.1101/2020.01.19.20017996
Autores:
Koval, Igor; Bône, Alexandre; Louis, Maxime; Bottani, Simona; Marcoux, Arnaud; Samper-Gonzalez, Jorge; Burgos, Ninon; CHARLIER, Benjamin; Bertrand, Anne; Epelbaum, Stéphane; Colliot, Olivier; Allassonnière, Stéphanie; Durrleman, Stanley
Publicado en:
2018, Edición 2, 2018
Editor:
INRIA
Autores:
Sara, Mora; Sumit, Madan; Stephan, Gebel; Mauro, Giacomini
Publicado en:
Fraunhofer SCAI, Edición 1, 2020
Editor:
IOS Press
Autores:
Martin, Lucas; Josse, Julie; Thirion, Bertrand
Publicado en:
MICCAI BrainLes 2020 workshop, Oct 2020, Lima, Peru, Edición 1, 2021
Editor:
Springer
DOI:
10.1007/978-3-030-72084-1_9
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