A federated FAIR platform enabling large-scale analysis of high-value cohort data connecting Europe and Canada in personalized health

Deliverables

Streamlined mechanism for distributing functions to the data access nodes to support bioinformatics toolbox in use

Mechanisms will be developed to ease the development and reduce the cost of deployment of new analysis algorithms into the data access nodes This will reduce the time taken for data access node operators in the cohorts to spend time on maintenance of algorithms available at their node

Scientific output

The results of T6.2 will be described in at least 10 scientific papers (top 25% journals)

List of stakeholders using EUCAN-Connect M24

Yearly update of the lists of partners and participants of WP61WP63 as engaged

Guidelines for data harmonization

Methodological harmonization guidelines to be used to support data harmonization process

Governance context appraisal

Account of the existing regulatory context challenges and issues including for the governance of the DataSHIELD infrastructure and stakeholder expectations of data sharing and data governance

Community can add tools to the toolbox

This deliverable is the successful creation and incorporation of community developed tools and apps to support analysis or to facilitate successful interaction with governance systems and stipulations Task 510 This work will be undertaken with WP7 and its experts in coproduction of tools and apps

List of stakeholders using EUCAN-Connect M36

Yearly update of the lists of partners and participants of WP61WP63 as engaged

Communication about results

Conference workshops on the scientific potential of EUCANConnect analyses for the outcomes

Report on latest release of data access system and deployment in the cohorts

This report will detail the latest release of the data access system and provide a description of the resulting deployment in the cohorts including progress on the KPIs

List of stakeholders using EUCAN-Connect M48

Yearly update of the lists of partners and participants of WP61WP63 as engaged

Sustainability plan for EUCAN-Connect

Sustainability plan V10 of the developed infrastructure coordinated by BBMRIERIC

System for data deposition and federated access deployed

First deployment of the software to facilitate federated data access and analysis is ready in cohorts required for specific analytic needs of EUCANConnect including suitable SOPs monitoring options and training materials

List of stakeholders using EUCAN-Connect M12

Yearly update of the lists of partners and participants of WP6.1-WP6.3 as engaged.

Federated cohort metadata catalogue

Catalogue of cohorts, their data item semantic annotations, and cross-cohort mapping to harmonize these data.

Training material datashield users

Complete extension and customisation of DataSHIELD, Opal, and MOLGENIS for the specific analytic needs of EUCAN-Connect. Task T5.6 completed in all respects. N.B. In contrast to M5.2, D5.2 includes completion of the development work to enable analysis of high throughput omics data in DataSHIELD. Tasks T5.7, T5.8, and T5.9 completed.

Update core set of variables

Core information harmonized to be used to answer research questions addressed.

Core set of harmonized variables

Core information harmonized to be used to answer research questions addressed.

Bioinformatics support & training in place

Effective programs and systems for help, advice, support, and training relating to the Bioinformatics Toolbox, DataSHIELD, Opal, and MOLGENIS have been successfully developed and implemented. The key issue here is that programs and systems developed under Task 5.11 have been shown to work well within EUCAN-Connect and can now be rolled out externally.

Cohort metadata model

Data model for cohort metadata/data items and their mapping/curations (publishable)

Catalogue training material

training material for the catalogue

Bioinformatics Toolbox catalogue online

Catalogue of tools and methods for federated andor privacy protected analysis of cohort studies and biobanks is complete from the perspective of the needs of EUCANConnect and made publicly available on the external web T52T55

DataSHIELD open data API

Framework that enables software providers to extend their software to interface with the DataSHIELD network. These capabilities will be demonstrated by implementing the API with MOLGENIS and investigating the feasibility of connecting other scientific data software.

Practical translation

At least two digital tools (software applications) that can be applied for risk estimations will be developed

Report indicating what would be required to take the bioinformatics toolbox beyond EUCAN-Connect

Task 5.12 addresses the tailoring of DataSHIELD’s functionality for analysing vertically partitioned data (where different sources hold different data on the same observational units) to enable a fully efficient Genomewide Complex Trait Analysis to be undertaken without data having to be transferred between the studies generating the data. Task 5.13 addresses an exploration of the potential to provide toolbox users with an option to use a simplified subset of analysis commands via a web-based graphical interface that can directly address a number of the tools in the toolbox.

Publications

DNA methylation and lipid metabolism : an EWAS of 226 metabolic measures

Author(s): Gomez-Alonso, Monica del C.; Kretschmer, Anja; Wilson, Rory; Pfeiffer, Liliane; Karhunen, Ville; Seppala, Ilkka; Zhang, Weihua; Mittelstrass, Kirstin; Wahl, Simone; Matias-Garcia, Pamela R.; Prokisch, Holger; Horn, Sacha; Meitinger, Thomas; Serrano-Garcia, Luis R.; Sebert, Sylvain; Raitakari, Olli; Loh, Marie; Rathmann, Wolfgang; Mueller-Nurasyid, Martina; Herder, Christian; Roden, Michael; Hurme,
Published in: Clinical Epigenetics, 2021, ISSN 1868-7075
Publisher: Springer Verlag
DOI: 10.1186/s13148-020-00957-8

In utero exposure to bisphenols and asthma, wheeze, and lung function in school-age children: a prospective meta-analysis of 8 European birth cohorts.

Author(s): Abellan A, Mensink-Bout SM, Garcia-Esteban R, Beneito A, Chatzi L, Duarte-Salles T, Fernandez MF, Garcia-Aymerich J, Granum B, Iñiguez C, Jaddoe VWV, Kannan K, Lertxundi A, Lopez-Espinosa MJ, Philippat C, Sakhi AK, Santos S, Siroux V, Sunyer J, Trasande L, Vafeiadi M, Vela-Soria F, Yang TC, Zabaleta C, Vrijheid M, Duijts L, Casas M.
Published in: Environment International, 2022, ISSN 1873-6750
Publisher: Elsevier
DOI: 10.1016/j.envint.2022.107178

Maternal educational attainment in pregnancy and epigenome-wide DNA methylation changes in the offspring from birth until adolescence.

Author(s): Choudhary P, Monasso GS, Karhunen V, Ronkainen J, Mancano G, Howe CG, Niu Z, Zeng X, Guan W, Dou J, Feinberg JI, Mordaunt C, Pesce G, Baïz N, Alfano R, Martens DS, Wang C, Isaevska E, Keikkala E, Mustaniemi S, Thio CHL, Fraszczyk E, Tobi EW, Starling AP, Cosin-Tomas M, Urquiza J, Röder S, Hoang TT, Page C, Jima DD, House JS, Maguire RL, Ott R, Pawlow X, Sirignano L, Zillich L, Malmberg A, Rausch
Published in: Mol Psychiatry., 2023, ISSN 1359-4184
Publisher: Nature Publishing Group
DOI: 10.1038/s41380-023-02331-5

Cardio-metabolic risk factors during childhood in relation to lung function and asthma

Author(s): Mensink-Bout SM, Santos S, de Jongste JC, Jaddoe VWV, Duijts L.
Published in: Pediatric Allergy and Immunology, 2021, ISSN 1399-3038
Publisher: Wiley
DOI: 10.1111/pai.13509

Beyond trust: Amplifying unheard voices on concerns about harm resulting from health data-sharing

Author(s): Mulrine S, Blell M, Murtagh M
Published in: Medicine Access@ Point of Care, 2021, ISSN 2399-2026
Publisher: Journal of Medicine Access
DOI: 10.1177/23992026211048421

Early exposure to social disadvantages and later life body mass index beyond genetic predisposition in three generations of Finnish birth cohorts

Author(s): Estelle Lowry, Nina Rautio, Niko Wasenius, Tom A. Bond, Jari Lahti, Ioanna Tzoulaki, Abbas Dehghan, Anni Heiskala, Leena Ala-Mursula, Jouko Miettunen, Johan Eriksson, Marjo-Riitta Järvelin, Sylvain Sebert
Published in: BMC Public Health, Issue 20/1, 2020, ISSN 1471-2458
Publisher: BioMed Central
DOI: 10.1186/s12889-020-08763-w

Maternal Mediterranean diet in pregnancy and newborn DNA methylation: a meta-analysis in the PACE Consortium

Author(s): Küpers LK, Fernández-Barrés S, Nounu A, Friedman C, Fore R, Mancano G, Dabelea D, Rifas-Shiman SL, Mulder RH, Oken E, Johnson L, Bustamante M, Jaddoe VWV, Hivert MF, Starling AP, de Vries JHM, Sharp GC, Vrijheid M, Felix JF
Published in: Epigenetics, 2022, ISSN 1559-2294
Publisher: Landes Bioscience
DOI: 10.1080/15592294.2022.2038412

Maternal Glycemic Dysregulation During Pregnancy and Neonatal Blood DNA Methylation: Meta-analyses of Epigenome-Wide Association Studies

Author(s): Tobi EW, Juvinao-Quintero DL, Ronkainen J, Ott R, Alfano R, Canouil M, Geurtsen ML, Khamis A, Küpers LK, Lim IY, Perron P, Pesce G, Tuhkanen J, Starling AP, Andrew T, Binder E, Caiazzo R, Chan JKY, Gaillard R, Gluckman PD, Keikkala E, Karnani N, Mustaniemi S, Nawrot TS, Pattou F, Plusquin M, Raverdy V, Tan KH, Tzala E, Raikkonen K, Winkler C, Ziegler AG, Annesi-Maesano I, Bouchard L, Chong YS, Da
Published in: Diabetes Care, 2022, ISSN 0149-5992
Publisher: American Diabetes Association
DOI: 10.2337/dc21-1701

dsSurvival: Privacy preserving survival models for federated individual patient meta-analysis in DataSHIELD

Author(s): Soumya Banerjee, Ghislain N. Sofack, Thodoris Papakonstantinou, Demetris Avraam, Paul Burton, Daniela Zöller, Tom R.P. Bishop
Published in: BMC Research Notes, 2022, ISSN 1756-0500
Publisher: BioMed Central
DOI: 10.1186/s13104-022-06085-1

Gestational age at birth and body size from infancy through adolescence: an individual participant data meta-analysis on 253,810 singletons in 16 birth cohort studies

Author(s): Johan L. Vinther MSc1*; Tim Cadman PhD2; Demetris Avraam PhD3; Claus T. Ekstrøm PhD4; Thorkild I.A. Sørensen MD.dr.med.sci1,5; Ahmed Elhakeem PhD2; Ana C. Santos PhD6,7; Angela Pinot de Moira PhD1; Barbara Heude PhD8; Carmen Iñiguez PhD9,10,11; Costanza Pizzi PhD12; Elinor Simons MD.PhD13,14; Ellis Voerman PhD 15,16; Eva Corpeleijn PhD17; Faryal Zariouh MSc18; Gilian Santorelli MSc19; Hazel M.
Published in: PLOS Medicine, 2023, ISSN 1549-1277
Publisher: Public Library of Science
DOI: 10.1371/journal.pmed.1004036

LongITools: Dynamic longitudinal exposome trajectories in cardiovascular and metabolic noncommunicable diseases.

Author(s): Ronkainen J, Nedelec R, Atehortua A, Balkhiyarova Z, Cascarano A, Ngoc Dang V, Elhakeem A, van Enckevort E, Goncalves Soares A, Haakma S, Halonen M, Heil KF, Heiskala A, Hyde E, Jacquemin B, Keikkala E, Kerckhoffs J, Klåvus A, Kopinska JA, Lepeule J, Marazzi F, Motoc I, Näätänen M, Ribbenstedt A, Rundblad A, Savolainen O, Simonetti V, de Toro Eadie N, Tzala E, Ulrich A, Wright T, Zarei I, d'Am
Published in: Environmental Epidemiology, 2021, ISSN 2474-7882
Publisher: Wolters Kluwer
DOI: 10.1097/ee9.0000000000000184

The EU Child Cohort Network's core data: establishing a set of findable, accessible, interoperable and re-usable (FAIR) variables

Author(s): Pinot de Moira A, Haakma S, Strandberg-Larsen K, van Enckevort E, Kooijman M, Cadman T, Cardol M, Corpeleijn E, Crozier S, Duijts L, Elhakeem A, Eriksson JG, Felix JF, Fernández-Barrés S, Foong RE, Forhan A, Grote V, Guerlich K, Heude B, Huang RC, Järvelin MR, Jørgensen AC, Mikkola TM, Nader JLT, Pedersen M, Popovic M, Rautio N, Richiardi L, Ronkainen J, Roumeliotaki T, Salika T, Sebert S, Vin
Published in: European Journal of Epidemiology, 2021, ISSN 0393-2990
Publisher: Kluwer Academic Publishers
DOI: 10.1007/s10654-021-00733-9

Eczema phenotypes and risk of allergic and respiratory conditions in school age children

Author(s): Chen Hu, Tamar Nijsten, Evelien R. van Meel, Nicole S. Erler, Christophe Piketty, Nicolette W. de Jong, Suzanne G. M. A. Pasmans, Johan C. de Jongste & Liesbeth Duijts
Published in: Clinical and Translational Allergy, Issue 10, 2020, Page(s) 7, ISSN 2045-7022
Publisher: Clin Transl Allergy
DOI: 10.1186/s13601-020-0310-7

Association between nasal and nasopharyngeal bacterial colonization in early life and eczema phenotypes

Author(s): Hu C, Duijts L, van Meel ER, Looman KIM, Kiefte-de Jong JC, Pardo LM, Hijnen D, Pasmans SGMA, de Jongste JC, Moll HA, Nijsten T
Published in: Clinical and Experimental Allergy, 2021, ISSN 0954-7894
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/cea.13869

Orchestrating privacy-protected big data analyses of data from different resources with R and DataSHIELD

Author(s): Yannick Marcon, Tom Bishop, Demetris Avraam, Xavier Escriba-Montagut, Patricia Ryser-Welch, Stuart Wheater, Paul Burton, Juan R. González
Published in: PLOS Computational Biology, 2021, ISSN 1553-734X
Publisher: Public Library of Science
DOI: 10.1371/journal.pcbi.1008880

Effect of Sex and Underlying Disease on the Genetic Association of QT Interval and Sudden Cardiac Death

Author(s): Rebecca N. Mitchell, Foram N. Ashar, Marjo‐Riitta Jarvelin, Philippe Froguel, Nona Sotoodehnia, Jennifer A. Brody, Sylvain Sebert, Heikki Huikuri, John Rioux, Philippe Goyette, Charles E. Newcomb, M. Juhani Junttila, Dan E. Arking
Published in: Journal of the American Heart Association, Issue 8/23, 2019, ISSN 2047-9980
Publisher: Wiley-Blackwell
DOI: 10.1161/jaha.119.013751

Could vitamin D reduce obesity-associated inflammation? Observational and Mendelian randomization study

Author(s): Saranya Palaniswamy, Dipender Gill, N Maneka De Silva, Estelle Lowry, Jari Jokelainen, Toni Karhu, Shivaprakash J Mutt, Abbas Dehghan, Eeva Sliz, Daniel I Chasman, Markku Timonen, Heimo Viinamäki, Sirkka Keinänen-Kiukaanniemi, Elina Hyppönen, Karl-Heinz Herzig, Sylvain Sebert, Marjo-Riitta Järvelin
Published in: The American Journal of Clinical Nutrition, Issue 111/5, 2020, Page(s) 1036-1047, ISSN 0002-9165
Publisher: American Society for Clinical Nutrition, Inc.
DOI: 10.1093/ajcn/nqaa056

Influence of maternal vomiting during early pregnancy on school-age respiratory health.

Author(s): Poeran-Bahadoer SD, van Meel ER, Gaillard R, Jaddoe VWV, Duijts L.
Published in: Pediatric Pulmonology, 2022, ISSN 8755-6863
Publisher: John Wiley & Sons Inc.
DOI: 10.1002/ppul.25747

Maternal hemoglobin and iron status in early pregnancy and risk of respiratory tract infections in childhood: A population-based prospective cohort study.

Author(s): Quezada-Pinedo HG, van Meel ER, Reiss IK, Jaddoe V, Vermeulen MJ, Duijts L.
Published in: Pediatr Allergy Immunol., 2023, ISSN 0905-6157
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/pai.14025

Associations of Plasma Fatty Acid Patterns during Pregnancy with Respiratory and Allergy Outcomes at School Age

Author(s): Mensink-Bout SM, Voortman T, Dervishaj M, Reiss IKM, De Jongste JC, Jaddoe VWV, Duijts L
Published in: Nutrients, 2020, ISSN 2072-6643
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/nu12103057

Effect of common pregnancy and perinatal complications on offspring metabolic traits across the life course: a multi-cohort study.

Author(s): Elhakeem A, Ronkainen J, Mansell T, Lange K, Mikkola TM, Mishra BH, Wahab RJ, Cadman T, Yang T, Burgner D, Eriksson JG, Järvelin MR, Gaillard R, Jaddoe VWV, Lehtimäki T, Raitakari OT, Saffery R, Wake M, Wright J, Sebert S, Lawlor DA.
Published in: BMC Medicine, 2023, ISSN 1741-7015
Publisher: BioMed Central
DOI: 10.1186/s12916-022-02711-8

Early-life respiratory tract infections and the risk of school-age lower lung function and asthma: a meta-analysis of 150 000 European children.

Author(s): van Meel ER, Mensink-Bout SM, den Dekker HT, Ahluwalia TS, Annesi-Maesano I, Arshad SH, Baïz N, Barros H, von Berg A, Bisgaard H, Bønnelykke K, Carlsson CJ, Casas M, Chatzi L, Chevrier C, Dalmeijer G, Dezateux C, Duchen K, Eggesbø M, van der Ent C, Fantini M, Flexeder C, Frey U, Forastiere F, Gehring U, Gori D, Granell R, Griffiths LJ, Inskip H, Jerzynska J, Karvonen AM, Keil T, Kelleher C, Kog
Published in: European Respiratory Journal, 2022, ISSN 0903-1936
Publisher: European Respiratory Society
DOI: 10.1183/13993003.02395-2021

Epigenome-wide meta-analysis of prenatal maternal stressful life events and newborn DNA methylation

Author(s): Kotsakis Ruehlmann A, Sammallahti S, Cortés Hidalgo AP, Bakulski KM, Binder EB, Campbell ML, Caramaschi D, Cecil CAM, Colicino E, Cruceanu C, Czamara D, Dieckmann L, Dou J, Felix JF, Frank J, Håberg SE, Herberth G, Hoang TT, Houtepen LC, Hüls A, Koen N, London SJ, Magnus MC, Mancano G, Mulder RH, Page CM, Räikkönen K, Röder S, Schmidt RJ, Send TS, Sharp G, Stein DJ, Streit F, Tuhkanen J, Wit
Published in: Molecular Psychiatry, 2023, ISSN 1359-4184
Publisher: Nature Publishing Group
DOI: 10.1038/s41380-023-02010-5

Global Initiative for Asthma Strategy 2021: executive summary and rationale for key changes

Author(s): Reddel HK, Bacharier LB, Bateman ED, Brightling CE, Brusselle GG, Buhl R, Cruz AA, Duijts L, Drazen JM, FitzGerald JM, Fleming LJ, Inoue H, Ko FW, Krishnan JA, Levy ML, Lin J, Mortimer K, Pitrez PM, Sheikh A, Yorgancioglu AA, Boulet LP.
Published in: European Respiratory Journal, 2021, ISSN 0903-1936
Publisher: European Respiratory Society
DOI: 10.1183/13993003.02730-2021

dsSurvival 2.0: privacy enhancing survival curves for survival models in the federated DataSHIELD analysis system

Author(s): Banerjee, S., Bishop, T.R.P.
Published in: BMC Research Notes, 2023, ISSN 1756-0500
Publisher: BioMed Central
DOI: 10.1186/s13104-023-06372-5

A meta-analysis of epigenome-wide association studies on pregnancy vitamin B12 concentrations and offspring DNA methylation

Author(s): Monasso GS, Hoang TT, Mancano G, Fernández-Barrés S, Dou J, Jaddoe VWV, Page CM, Johnson L, Bustamante M, Bakulski KM, Håberg SE, Ueland PM, Battram T, Merid SK, Melén E, Caramaschi D, Küpers LK, Sunyer J, Nystad W, Heil SG, Schmidt RJ, Vrijheid M, Sharp GC, London SJ, Felix JF.
Published in: Epigenetics, 2023, ISSN 1559-2294
Publisher: Landes Bioscience
DOI: 10.1080/15592294.2023.2202835

Maternal Iron Status in Pregnancy and Child Health Outcomes after Birth: A Systematic Review and Meta-Analysis

Author(s): Quezada-Pinedo HG, Cassel F, Duijts L, Muckenthaler MU, Gassmann M, Jaddoe VWV, Reiss IKM, Vermeulen MJ
Published in: Nutrients, 2021, ISSN 2072-6643
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/nu13072221

Advancing tools for human early lifecourse exposome research and translation (ATHLETE): Project overview.

Author(s): Vrijheid M, Basagaña X, Gonzalez JR, Jaddoe VWV, Jensen G, Keun HC, McEachan RRC, Porcel J, Siroux V, Swertz MA, Thomsen C, Aasvang GM, Andrušaitytė S, Angeli K, Avraam D, Ballester F, Burton P, Bustamante M, Casas M, Chatzi L, Chevrier C, Cingotti N, Conti D, Crépet A, Dadvand P, Duijts L, van Enckevort E, Esplugues A, Fossati S, Garlantezec R, Gómez Roig MD, Grazuleviciene R, Gützkow KB, G
Published in: Environmental Epidemiology, 2021, ISSN 2474-7882
Publisher: Wolters Kluwer
DOI: 10.1097/ee9.0000000000000166

European and multi-ancestry genome-wide association meta-analysis of atopic dermatitis highlights importance of systemic immune regulation.

Author(s): Budu-Aggrey A, Kilanowski A, Sobczyk MK; 23andMe Research Team; Shringarpure SS, Mitchell R, Reis K, Reigo A; Estonian Biobank Research Team; Mägi R, Nelis M, Tanaka N, Brumpton BM, Thomas LF, Sole-Navais P, Flatley C, Espuela-Ortiz A, Herrera-Luis E, Lominchar JVT, Bork-Jensen J, Marenholz I, Arnau-Soler A, Jeong A, Fawcett KA, Baurecht H, Rodriguez E, Alves AC, Kumar A, Sleiman PM, Chang X, Med
Published in: Nat Commun, 2023, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-023-41180-2

Life course of retrospective harmonization initiatives: key elements to consider

Author(s): Isabel Fortier, Tina W. Wey, Julie Bergeron, Angela Pinot de Moira, Anne-Marie Nybo-Andersen, Tom Bishop, Madeleine J. Murtagh, Milica Miočević, Morris A. Swertz, Esther van Enckevort, Yannick Marcon, Michaela. Th. Mayrhofer, Jos Pedro Ornelas, Sylvain Sebert
Published in: Journal of Developmental Origins of Health and Disease, 2022, ISSN 2040-1752
Publisher: CUP
DOI: 10.1017/s2040174422000460

Body height and spinal pain in adolescence: a cohort study from the Danish National Birth Cohort

Author(s): Anne Cathrine Falch-Joergensen, Per Kragh Andersen, Esben Budtz-Jorgensen, Lise Hestbaek, Katrine Strandberg-Larsen & Anne-Marie Nybo Andersen
Published in: BMC Musculoskeletal Disorders, 2023, ISSN 1471-2474
Publisher: BioMed Central
DOI: 10.1186/s12891-023-07077-3

Gestational age and trajectories of body mass index and height from birth through adolescence in the Danish National Birth Cohort

Author(s): Vinther JL, Ekstrøm CT, Sørensen TIA, Cederkvist L, Lawlor DA, Andersen AN.
Published in: Scientific Reports, 2023, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-023-30123-y

Genetic correlation and causal relationships between cardio-metabolic traits and lung function impairment

Author(s): Wielscher M Amaral A van der Plaat D Wain L Sebert S Mosen-Ansorena D Auvinen J Herzig K Dehghan A Jarvis D Jarvelin M
Published in: Genome Medicine, 2021, ISSN 1756-994X
Publisher: BioMed Central
DOI: 10.1186/s13073-021-00914-x

A deterministic approach for protecting privacy in sensitive personal data

Author(s): Avraam D, Jones E, Burton P
Published in: BMC Medical Informatics and Decision Making, 2022, ISSN 1472-6947
Publisher: BioMed Central
DOI: 10.1186/s12911-022-01754-4

The LifeCycle Project-EU Child Cohort Network: a federated analysis infrastructure and harmonized data of more than 250,000 children and parents

Author(s): Vincent W. V. Jaddoe, Janine F. Felix, Anne-Marie Nybo Andersen, Marie-Aline Charles, Leda Chatzi, Eva Corpeleijn, Nina Donner, Ahmed Elhakeem, Johan G. Eriksson, Rachel Foong, Veit Grote, Sido Haakma, Mark Hanson, Jennifer R. Harris, Barbara Heude, Rae-Chi Huang, Hazel Inskip, Marjo-Riitta Järvelin, Berthold Koletzko, Deborah A. Lawlor, Maarten Lindeboom, Rosemary R. C. McEachan, Tuija M. Mikkol
Published in: European Journal of Epidemiology, Issue 35/7, 2020, Page(s) 709-724, ISSN 0393-2990
Publisher: Kluwer Academic Publishers
DOI: 10.1007/s10654-020-00662-z

Ethnic differences in adverse iron status in early pregnancy: a cross-sectional population-based study.

Author(s): Quezada-Pinedo HG, Cassel F, Muckenthaler MU, Gassmann M, Huicho L, Reiss IK, Duijts L, Gaillard R, Vermeulen MJ.
Published in: Journal of Nutritional Science, 2022, ISSN 2048-6790
Publisher: CUP
DOI: 10.1017/jns.2022.35

Interaction between filaggrin mutations and neonatal cat exposure in atopic dermatitis

Author(s): Jacob P. Thyssen, Tarunveer S. Ahluwalia, Lavinia Paternoster, Natalia Ballardini, Anna Bergström, Erik Melén, Bo L. Chawes, Jakob Stokholm, Jonathan O'B Hourihane, Donnchadh M. O'Sullivan, Peter Bager, Mads Melbye, Mariona Bustamante, Maties Torrent, Ana Esplugues, Liesbeth Duijts, Chen Hu, Niels J. Elbert, Suzanne G. M. A. Pasmans, Tamar E. C. Nijsten, Andrea Berg, Marie Standl, Tamara Schikow
Published in: Allergy, Issue 75/6, 2020, Page(s) 1481-1485, ISSN 0105-4538
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/all.14162

What does engagement mean to participants in longitudinal cohort studies? A qualitative study.

Author(s): Ochieng CA, Minion JT, Turner A, Blell M, Murtagh M
Published in: BMC Med Ethics, 2021, ISSN 1472-6939
Publisher: BioMed Central
DOI: 10.1186/s12910-021-00648-w

Maternal caffeine consumption during pregnancy and offspring cord blood DNA methylation: an epigenome-wide association study meta-analysis.

Author(s): Schellhas L, Monasso GS, Felix JF, Jaddoe VW, Huang P, Fernández-Barrés S, Vrijheid M, Pesce G, Annesi-Maesano I, Page CM, Brantsæter AL, Bekkhus M, Håberg SE, London SJ, Munafò MR, Zuccolo L, Sharp GC.
Published in: Epigenomics, 2023, ISSN 1750-1911
Publisher: Future Medicine Ltd.
DOI: 10.2217/epi-2023-0263

Visualisation and Exploration of Linked Data using Virtual Reality

Author(s): Alexander J. Kellmann, Max Postema, Joris de Keijser, Pjotr Svetachov, Rebecca C. Wilson, Esther J. van Enckevort, Morris A. Swertz
Published in: The Journal of Biological Databases and Curation, 2024, ISSN 1758-0463
Publisher: Oxford University Press
DOI: 10.1093/database/baae008

Associations of early-life pet ownership with asthma and allergic sensitization: A meta-analysis of more than 77,000 children from the EU Child Cohort Network.

Author(s): Pinot de Moira A, Strandberg-Larsen K, Bishop T, Pedersen M, Avraam D, Cadman T, Calas L, Casas M, de Lauzon Guillain B, Elhakeem A, Esplugues A, Estarlich M, Foong RE, Haakma S, Harris JR, Huang RC, Inskip H, Lertxundi A, Mensink-Bout SM, Nader JLT, Pizzi C, Popovic M, Salika T, Sunyer J, Van Meel ER, Swertz MA, Jaddoe VWV, Burton P, Duijts L, Nybo Andersen AM.
Published in: Journal of Allergy and Clinical Immunology, 2022, ISSN 1097-6825
Publisher: Elsevier
DOI: 10.1016/j.jaci.2022.01.023

Key recommendations for primary care from the 2022 Global Initiative for Asthma (GINA) update

Author(s): Levy ML, Bacharier LB, Bateman E, Boulet LP, Brightling C, Buhl R, Brusselle G, Cruz AA, Drazen JM, Duijts L, Fleming L, Inoue H, Ko FWS, Krishnan JA, Mortimer K, Pitrez PM, Sheikh A, Yorgancıoğlu A, Reddel HK.
Published in: NPJ Primary Care Respiratory Medicine, 2023, ISSN 2055-1010
Publisher: Nature Publishing Group
DOI: 10.1038/s41533-023-00330-1

Consensus statement on public involvement and engagement with data intensive health research

Author(s): Aitken M, Tully MP, Porteous C, Denegri S, Cunningham-Burley S, Banner N, Black C, Burgess M, Cross L, van Delden JJ, Ford E
Published in: International Journal of Population Data Science, 2020, ISSN 2399-4908
Publisher: IJPDS
DOI: 10.23889/ijpds.v4i1.586

An agenda-setting paper on data sharing platforms: euCanSHare workshop

Author(s): """Thijs Devriendt, Clemens Ammann, Folkert W. Asselbergs, Alexander Bernier, Rodrigo Costas, Matthias G. Friedrich, Josep L. Gelpi, Marjo-Riitta Jarvelin, Kari Kuulasmaa, Karim Lekadir, Michaela Th. Mayrhofer, Vaclav Papez, Gerard Pasterkamp, Steffen E. Petersen, Carsten Oliver Schmidt, Jeanette Schulz-Menger, Stefan Söderberg, Mahsa Shabani, Giovanni Veronesi, Darian Steven Viezzer, Pascal Borry"
Published in: Open Research Europe, 2021, ISSN 2732-5121
Publisher: Open Research Europe
DOI: 10.12688/openreseurope.13860.2

Associations of physical condition with lung function and asthma in adolescents from the general population.

Author(s): Mensink-Bout SM, Jahangir MR, de Jongste JC, Raat H, Jaddoe VWV, Duijts L.
Published in: Pediatric Allergy and Immunology, 2022, ISSN 1399-3038
Publisher: John Wiley and Sons Ltd
DOI: 10.1111/pai.13811

Maternal iron status in early pregnancy and childhood body fat measures and cardiometabolic risk factors: A population-based prospective cohort.

Author(s): Quezada-Pinedo HG, Jaddoe V, Duijts L, Muka T, Vermeulen MJ, Reiss IKM, Santos S.
Published in: American Journal for Clinical Nutrition, 2022, ISSN 0002-9165
Publisher: American Society for Clinical Nutrition, Inc.
DOI: 10.1016/j.ajcnut.2022.10.006

Engaged genomic science produces better and fairer outcomes

Author(s): Murtagh, MJ, Machirori, M, Gaff, C, Blell, M, de Vries, J, Doerr, M, Dove, ES, Duncanson, A, Hastings Ward, J, Hendricks-Sturrup, R, Ho, CWL, Johns, A, Joly, Y, Kato, K, Katsui, K, Kumuthini, J, Maleady-Crowe, F, Middleton, A, Milne, R, Minion, JT, Matshaba, M, Mulrine, S, Patch, C, Ryan, R, Viney, W.
Published in: Wellcome Open, 2021, ISSN 2398-502X
Publisher: Pub Med Central
DOI: 10.12688/wellcomeopenres.17233.1

Exploring the role of genetic confounding in the association between maternal and offspring body mass index: evidence from three birth cohorts

Author(s): Tom A Bond, Ville Karhunen, Matthias Wielscher, Juha Auvinen, Minna Männikkö, Sirkka Keinänen-Kiukaanniemi, Marc J Gunter, Janine F Felix, Inga Prokopenko, Jian Yang, Peter M Visscher, David M Evans, Sylvain Sebert, Alex Lewin, Paul F O’Reilly, Debbie A Lawlor, Marjo-Riitta Jarvelin
Published in: International Journal of Epidemiology, Issue 49/1, 2019, Page(s) 233-243, ISSN 0300-5771
Publisher: Oxford University Press
DOI: 10.1093/ije/dyz095

A population-based study on associations of stool microbiota with atopic diseases in school-age children

Author(s): Hu C, van Meel ER, Medina-Gomez C, Kraaij R, Barroso M, Kiefte-de Jong J, Radjabzadeh D, Pasmans SGMA, de Jong NW, de Jongste JC, Moll HA, Nijsten T, Rivadeneira F, Pardo LM, Duijts L
Published in: The Journal of Allergy and Clinical Immunology, 2021, ISSN 0091-6749
Publisher: Mosby Inc.
DOI: 10.1016/j.jaci.2021.04.001

Maternal diet in pregnancy and child's respiratory outcomes: an individual participant data meta-analysis of 18 000 children.

Author(s): Mensink-Bout SM, van Meel ER, de Jongste JC, Annesi-Maesano I, Aubert AM, Bernard JY, Chen LW, Cooper C, Crozier SR, Hanke W, Harvey NC, Hébert JR, Heude B, Jerzynska J, Kelleher CC, Mehegan J, McAuliffe FM, Phillips CM, Polanska K, Relton CL, Shivappa N, Suderman M, Jaddoe VWV, Duijts L
Published in: European Respiratory Journal, 2021, ISSN 1399-3003
Publisher: European Respiratory Journal
DOI: 10.1183/13993003.01315-2021

Understanding the cumulative risk of maternal prenatal biopsychosocial factors on birth weight : a DynaHEALTH study on two birth cohorts

Author(s): Parmar, Priyanka; Lowry, Estelle; Vehmeijer, Florianne; El Marroun, Hanan; Lewin, Alex; Tolvanen, Mimmi; Tzala, Evangelia; Ala-Mursula, Leena; Herzig, Karl-Heinz; Miettunen, Jouko; Prokopenko, Inga; Rautio, Nina; Jaddoe, Vincent W. V.; Järvelin, Marjo-Riitta; Felix, Janine; Sebert, Sylvain
Published in: Journal of Epidemiology and Community Health, 2020, ISSN 0143-005X
Publisher: British Medical Association
DOI: 10.1136/jech-2019-213154

Polycystic ovary syndrome and leukocyte telomere length : cross-sectional and longitudinal changes

Author(s): Pölönen, Johanna; Pinola, Pekka; Ronkainen, Justiina; Blakemore, Alex; Buxton, Jessica L.; Tapanainen, Juha S.; Franks, Stephen; Piltonen, Terhi T.; Sebert, Sylvain; Morin-Papunen, Laure
Published in: EJE Clinical and transactional endocrinology from around the world, 2022, ISSN 1436-6207
Publisher: Dr. Dietrich Steinkopff Verlag
DOI: 10.1530/eje-22-0462

Longitudinal associations of DNA methylation and sleep in children: a meta-analysis

Author(s): Sammallahti S, Koopman-Verhoeff ME, Binter AC, Mulder RH, Cabré-Riera A, Kvist T, Malmberg ALK, Pesce G, Plancoulaine S, Heiss JA, Rifas-Shiman SL, Röder SW, Starling AP, Wilson R, Guerlich K, Haftorn KL, Page CM, Luik AI, Tiemeier H, Felix JF, Raikkonen K, Lahti J, Relton CL, Sharp GC, Waldenberger M, Grote V, Heude B, Annesi-Maesano I, Hivert MF, Zenclussen AC, Herberth G, Dabelea D, Grazulevi
Published in: Clinical Epigenetics, 2022, ISSN 1868-7083
Publisher: Springer Nature
DOI: 10.1186/s13148-022-01298-4

Maternal Dietary Glycemic Index and Glycemic Load in Pregnancy and Offspring Cord Blood DNA Methylation

Author(s): Küpers LK, Fernández-Barrés S, Mancano G, Johnson L, Ott R, Vioque J, Colombo M, Landgraf K, Tobi EW, Körner A, Gaillard R, de Vries JHM, Jaddoe VWV, Vrijheid M, Sharp GC, Felix JF.
Published in: Diabetes Care, 2022, ISSN 0149-5992
Publisher: American Diabetes Association
DOI: 10.2337/dc21-2662

Visualisation and Exploration of Linked Data using Virtual Reality

Author(s): Alexander J. Kellmann, Pauline Lanting, Lude Franke, Esther J. van Enckevort, Morris A. Swertz
Published in: Database - The Journal of Biological Databases and Curation, 2023, ISSN 1758-0463
Publisher: Oxford University Press
DOI: 10.1093/database/baad019

Increased Th22 cell numbers in a general pediatric population with filaggrin haploinsufficiency: The Generation R Study

Author(s): Looman KIM, van Mierlo MMF, van Zelm MC, Hu C, Duijts L, de Jongste JC, Nijsten T, Pardo LM, Kiefte-de Jong JC, Moll HA, Pasmans SGMA
Published in: Pediatric Allergy and Immunology, 2021, ISSN 1399-3038
Publisher: WIley
DOI: 10.1111/pai.13502

Genome-wide association study of placental weight identifies distinct and shared genetic influences between placental and fetal growth.

Author(s): Beaumont RN, Flatley C, Vaudel M, Wu X, Chen J, Moen GH, Skotte L, Helgeland Ø, Solé-Navais P, Banasik K, Albiñana C, Ronkainen J, Fadista J, Stinson SE, Trajanoska K, Wang CA, Westergaard D, Srinivasan S, Sánchez-Soriano C, Bilbao JR, Allard C, Groleau M, Kuulasmaa T, Leirer DJ, White F, Jacques PÉ, Cheng H, Hao K, Andreassen OA, Åsvold BO, Atalay M, Bhatta L, Bouchard L, Brumpton BM, Bruna
Published in: Nature Genetics, 2023, ISSN 1061-4036
Publisher: Nature Publishing Group
DOI: 10.1038/s41588-023-01520-w

The Impact of Mode of Birth, and Episiotomy, on Postpartum Sexual Function in the Medium- and Longer-Term: An Integrative Systematic Review

Author(s): Anne-Marie Fanshawe, Ank De Jong, Nicole Ginter, Lea Takács,Hannah G. Dahlen,Morris A. Swertz and Lilian L. Peters
Published in: International Journal of Environmental Research and Public Health, 2023, ISSN 1660-4601
Publisher: MDPI
DOI: 10.3390/ijerph20075252

Privacy preserving data visualisations

Author(s): Avraam D, Wilson R, Butters O, Burton T, Nicolaides C, Jones E, Boyd A, Burton P
Published in: EPJ Data Science, 2021, ISSN 2193-1127
Publisher: Springer Nature
DOI: 10.1140/epjds/s13688-020-00257-4

DNA methylation and general psychopathology in childhood: an epigenome-wide meta-analysis from the PACE consortium

Author(s): Rijlaarsdam J, Cosin-Tomas M, Schellhas L, Abrishamcar S, Malmberg A, Neumann A, Felix JF, Sunyer J, Gutzkow KB, Grazuleviciene R, Wright J, Kampouri M, Zar HJ, Stein DJ, Heinonen K, Räikkönen K, Lahti J, Hüls A, Caramaschi D, Alemany S, Cecil CAM
Published in: Molecular Psychiatry, 2023, ISSN 1359-4184
Publisher: Nature Publishing Group
DOI: 10.1038/s41380-022-01871-6

PUblications MEtadata Augmentation (PUMA) pipeline

Author(s): Oliver W Butters, Rebecca C Wilson, Hugh Garner, Thomas W. Y. Burton
Published in: F1000, 2020, ISSN 2046-1402
Publisher: F1000 Research Ltd.
DOI: 10.12688/f1000research.25484.1

Differential and shared genetic effects on kidney function between diabetic and non-diabetic individuals

Author(s): Winkler TW, Rasheed H, Teumer A, Gorski M, Rowan BX, Stanzick KJ, Thomas LF, Tin A, Hoppmann A, Chu AY, Tayo B, Thio CHL, Cusi D, Chai JF, Sieber KB, Horn K, Li M, Scholz M, Cocca M, Wuttke M, van der Most PJ, Yang Q, Ghasemi S, Nutile T, Li Y, Pontali G, Günther F, Dehghan A, Correa A, Parsa A, Feresin A, de Vries APJ, Zonderman AB, Smith AV, Oldehinkel AJ, De Grandi A, Rosenkranz AR, Franke A,
Published in: Communications BIology, 2022, ISSN 2399-3642
Publisher: Springer Nature
DOI: 10.1038/s42003-022-03448-z

Depression, cardiometabolic disease, and their co-occurrence after childhood maltreatment: an individual participant data meta-analysis including over 200,000 participants

Author(s): Souama C, Lamers F, Milaneschi Y, Vinkers CH, Defina S, Garvert L, Stein F, Woofenden T, Brosch K, Dannlowski U, Galenkamp H, de Graaf R, Jaddoe VWV, Lok A, van Rijn BB, Völzke H, Cecil CAM, Felix JF, Grabe HJ, Kircher T, Lekadir K, Have MT, Walton E, Penninx BWJH, EarlyCause consortium
Published in: BMC Medicine, 2023, ISSN 1741-7015
Publisher: BioMed Central
DOI: 10.1186/s12916-023-02769-y

dsSynthetic: Synthetic data generation for the DataSHIELDfederated analysis system

Author(s): Soumya Banerjee, Tom RP Bishop
Published in: BMC Research Notes, 2022, ISSN 1756-0500
Publisher: BioMed Central
DOI: 10.1186/s13104-022-06111-2

Return of individual research results from genomic research: A systematic review of stakeholder perspectives

Author(s): Vears, D, Minion, JT, Roberts, SJ, Cumming, J, Machirori, M, Blell, M, Budin-Ljøsne, I, Cowley, L, Dyke, SOM, Gaff, C, Green, RC, Hall, A, Johns, AL, Knoppers, BM, Mulrine, S, Patch, C, Winkler, E, Murtagh, MJ
Published in: PLOS ONE, 2021, ISSN 1932-6203
Publisher: Public Library of Science
DOI: 10.1371/journal.pone.0258646

Urban environment and cognitive and motor function in children from four European birth cohorts.

Author(s): Binter AC, Bernard JY, Mon-Williams M, Andiarena A, González-Safont L, Vafeiadi M, Lepeule J, Soler-Blasco R, Alonso L, Kampouri M, Mceachan R, Santa-Marina L, Wright J, Chatzi L, Sunyer J, Philippat C, Nieuwenhuijsen M, Vrijheid M, Guxens M
Published in: Environment International, 2022, ISSN 0160-4120
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.envint.2021.106933

Machine learning-based DNA methylation score for fetal exposure to maternal smoking : development and validation in samples collected from adolescents and adults

Author(s): Rauschert, Sebastian; Melton, Phillip E.; Heiskala, Anni; Karhunen, Ville; Burdge, Graham; Craig, Jeffrey M.; Godfrey, Keith M.; Lillycrop, Karen; Mori, Trevor A.; Beilin, Lawrence J.; Oddy, Wendy H.; Pennell, Craig; Järvelin, Marjo-Riitta; Sebert, Sylvain; Huang, Rae-Chi
Published in: Environmental Health Perspectives, 2020, ISSN 0091-6765
Publisher: US Department of Health and Human Services
DOI: 10.1289/ehp6076

Towards an Interoperable Ecosystem of Research Cohort and Real-world Data Catalogues Enabling Multi-center Studies

Author(s): Morris Swertz   * , Esther van Enckevort , José Luis Oliveira , Isabel Fortier , Julie Bergeron , Nicolas H. Thurin , Eleanor Hyde , Alexander Kellmann , Romin Pahoueshnja , Miriam Sturkenboom , Marianne Cunnington , Anne-Marie Nybo Andersen , Yannick Marcon , Gonçalo Gonçalves , Rosa Gini *
Published in: Yearb Med Inform 2022, 2022, ISSN 0943-4747
Publisher: Thieme
DOI: 10.1055/s-0042-1742522

Innovative approach for first-trimester fetal organ volume measurements using a Virtual Reality system: The Generation R Next Study.

Author(s): Wiertsema CJ, Sol CM, Mulders AGMGJ, Steegers EAP, Duijts L, Gaillard R, Koning AHJ, Jaddoe VWV.
Published in: The journal of obstetrics and gynaecology research, 2022, ISSN 1447-0756
Publisher: Wiley and Sons
DOI: 10.1111/jog.15151

Associations of Total Legume, Pulse, and Soy Consumption with Incident Type 2 Diabetes: Federated Meta-Analysis of 27 Studies from Diverse World Regions

Author(s): Pearce Bishop
Published in: Journal of Nutrition, 2021, ISSN 1541-6100
Publisher: OUP
DOI: 10.1093/jn/nxaa447

Analysis of DNA methylation at birth and in childhood reveals changes associated with season of birth and latitude.

Author(s): Kadalayil L, Alam MZ, White CH, Ghantous A, Walton E, Gruzieva O, Merid SK, Kumar A, Roy RP, Solomon O, Huen K, Eskenazi B, Rzehak P, Grote V, Langhendries JP, Verduci E, Ferre N, Gruszfeld D, Gao L, Guan W, Zeng X, Schisterman EF, Dou JF, Bakulski KM, Feinberg JI, Soomro MH, Pesce G, Baiz N, Isaevska E, Plusquin M, Vafeiadi M, Roumeliotaki T, Langie SAS, Standaert A, Allard C, Perron P, Bouchard
Published in: Clin Epigenetics, 2023, ISSN 1868-7083
Publisher: Springer Nature
DOI: 10.1186/s13148-023-01542-5

Glucose metabolism in midlife predicts participation in working life: a Northern Finland Birth Cohort 1966 study

Author(s): Tuulia Varanka-Ruuska, Mimmi Tolvanen, Eeva Vaaramo, Sirkka Keinänen-Kiukaanniemi, Sylvain Sebert, Nina Rautio, Leena Ala-Mursula
Published in: Occupational and Environmental Medicine, Issue 77/5, 2020, Page(s) 324-332, ISSN 1351-0711
Publisher: BMJ Publishing Group
DOI: 10.1136/oemed-2019-106170

The determinants and longitudinal changes in vitamin D status in middle-age : a Northern Finland Birth Cohort 1966 study

Author(s): Ikonen, Helmi; Lumme, Johanna; Seppälä, Jussi; Pesonen, Paula; Piltonen, Terhi; Järvelin, Marjo-Riitta; Herzig, Karl-Heinz; Miettunen, Jouko; Niinimäki, Maarit; Palaniswamy, Saranya; Sebert, Sylvain; Ojaniemi, Marja
Published in: European Journal of Nutrition, 2021, ISSN 1436-6207
Publisher: Dr. Dietrich Steinkopff Verlag
DOI: 10.1007/s00394-021-02606-z

Views on genomic research result delivery methods and informed consent: a review

Author(s): Vears DF, Minion JT, Roberts SJ, Cummings J, Machirori M, Murtagh MJ
Published in: Personalized Medicine, 2021, ISSN 1741-0541
Publisher: Future Medicine Ltd.
DOI: 10.2217/pme-2020-0139

Maternal and infant prediction of the child BMI trajectories : studies across two generations of Northern Finland birth cohorts

Author(s): Nedelec, Rozenn; Miettunen, Jouko; Männikkö, Minna; Järvelin, Marjo-Riitta; Sebert, Sylvain
Published in: International Journal of Obesity, 2021, ISSN 0307-0565
Publisher: Nature Publishing Group
DOI: 10.1038/s41366-020-00695-0

Maternal iron status in early pregnancy and DNA methylation in offspring: an epigenome-wide meta-analysis

Author(s): Taeubert MJ, de Prado-Bert P, Geurtsen ML, Mancano G, Vermeulen MJ, Reiss IKM, Caramaschi D, Sunyer J, Sharp GC, Julvez J, Muckenthaler MU, Felix JF.
Published in: Clinical Epigenetics, 2022, ISSN 1868-7083
Publisher: Springer Nature
DOI: 10.1186/s13148-022-01276-w

Vitamin D Levels in Women with Polycystic Ovary Syndrome: A Population-Based Study

Author(s): Johanna Lumme, Sylvain Sebert, Paula Pesonen, Terhi Piltonen, Marjo-Riitta Järvelin, Karl-Heinz Herzig, Juha Auvinen, Marja Ojaniemi, Maarit Niinimäki
Published in: Nutrients, Issue 11/11, 2019, Page(s) 2831, ISSN 2072-6643
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/nu11112831

Visceral adiposity and respiratory outcomes in children and adults: a systematic review.

Author(s): Wu T, Jahangir MR, Mensink-Bout SM, Klein S, Duijts L, Oei EHG.
Published in: International Journal of Obesity, 2022, ISSN 0307-0565
Publisher: Nature Publishing Group
DOI: 10.1038/s41366-022-01091-6

Reconciling the biomedical data commons and the GDPR: three lessons from the EUCAN ELSI collaboratory

Author(s): Goisauf, Wilson, Murtagh (eucan authors)
Published in: European Journal of Human Genetics, 2023, ISSN 1018-4813
Publisher: Natue Publishing Group
DOI: 10.1038/s41431-023-01403-y

Vitamin D status and correlates of low vitamin D in schizophrenia, other psychoses and non-psychotic depression – The Northern Finland Birth Cohort 1966 study

Author(s): H. Ikonen, S. Palaniswamy, T. Nordström, M.R. Järvelin, K.H. Herzig, E. Jääskeläinen, J. Seppälä, J. Miettunen, S. Sebert
Published in: Psychiatry Research, Issue 279, 2019, Page(s) 186-194, ISSN 0165-1781
Publisher: Elsevier BV
DOI: 10.1016/j.psychres.2019.02.060

First trimester fetal proportion volumetric measurements using a Virtual Reality approach

Author(s): Wiertsema CJ, Erkamp JS, Mulders AGMGJ, Steegers EAP, Duijts L, Koning AHJ, Gaillard R, Jaddoe VWV.
Published in: Prenatal Diagnosis, 2021, ISSN 0197-3851
Publisher: John Wiley & Sons Inc.
DOI: 10.1002/pd.5947

Epigenome-wide meta-analysis of blood DNA methylation in newborns and children identifies numerous loci related to gestational age

Author(s): Simon Kebede Merid, Alexei Novoloaca, Gemma C. Sharp, Leanne K. Küpers, Alvin T. Kho, Ritu Roy, Lu Gao, Isabella Annesi-Maesano, Pooja Jain, Michelle Plusquin, Manolis Kogevinas, Catherine Allard, Florianne O. Vehmeijer, Nabila Kazmi, Lucas A. Salas, Faisal I. Rezwan, Hongmei Zhang, Sylvain Sebert, Darina Czamara, Sheryl L. Rifas-Shiman, Phillip E. Melton, Debbie A. Lawlor, Göran Pershagen, Carr
Published in: Genome Medicine, Issue 12/1, 2020, ISSN 1756-994X
Publisher: BioMed Central
DOI: 10.1186/s13073-020-0716-9

Maternal iron status during early pregnancy and school-age, lung function, asthma, and allergy: The Generation R Study

Author(s): Quezada-Pinedo HG, Mensink-Bout SM, Reiss IK, Jaddoe VWV, Vermeulen MJ, Duijts L
Published in: Pediatric Pulmonology, 2021, ISSN 8755-6863
Publisher: John Wiley & Sons Inc.
DOI: 10.1002/ppul.25324

Meta-analysis of epigenome-wide association studies in newborns and children show widespread sex differences in blood DNA methylation

Author(s): Solomon O, Huen K, Yousefi P, Küpers LK, González JR, Suderman M, Reese SE, Page CM, Gruzieva O, Rzehak P, Gao L, Bakulski KM, Novoloaca A, Allard C, Pappa I, Llambrich M, Vives M, Jima DD, Kvist T, Baccarelli A, White C, Rezwan FI, Sharp GC, Tindula G, Bergström A, Grote V, Dou JF, Isaevska E, Magnus MC, Corpeleijn E, Perron P, Jaddoe VWV, Nohr EA, Maitre L, Foraster M, Hoyo C, Håberg SE, Lah
Published in: Mutat Res Rev Mutat Res, 2022, ISSN 1383-5742
Publisher: Elsevier BV
DOI: 10.1016/j.mrrev.2022.108415

Software Application Profile: ShinyDataSHIELD—an R Shiny application to perform federated non-disclosive data analysis in multicohort studies

Author(s): Escribà-Montagut X, Yannick Marcon, Demetris Avraam, Soumya Banerjee, Tom R P Bishop, Paul Burton, Juan R González
Published in: International Journal of Epidemiology, 2022, ISSN 1464-3685
Publisher: Oxford University Press
DOI: 10.1093/ije/dyac201

Cohort description: Measures of early-life behaviour and later psychopathology in the LifeCycle Project - EU Child Cohort Network

Author(s): Nader JL, López-Vicente M, Julvez J, Guxens M, Cadman T, Elhakeem A, Järvelin MR, Rautio N, Miettunen J, El Marroun H, Melchior M, Heude B, Charles MA, Yang TC, McEachan RRC, Wright J, Polanska K, Carson J, Lin A, Rauschert S, Huang RC, Popovic M, Richiardi L, Corpeleijn E, Cardol M, Mikkola TM, Eriksson JG, Salika T, Inskip H, Vinther JL, Strandberg-Larsen K, Gürlich K, Grote V, Koletzko B, Va
Published in: Journal of Epidemiology, 2021, ISSN 0917-5040
Publisher: Tokyo University of Agriculture
DOI: 10.2188/jea.je20210241

The Effects of Urbanization on the Infant Gut Microbiota and Health Outcomes

Author(s): Siobhan Brushett, Trishla Sinha, Sijmen A. Reijneveld, Marlou L. A. de Kroon, Alexandra Zhernakova
Published in: Frontiers in Pediatrics, Issue 8, 2020, ISSN 2296-2360
Publisher: Frontiers
DOI: 10.3389/fped.2020.00408

Genome-wide DNA methylation patterns associated with general psychopathology in children

Author(s): Rijlaarsdam J, Barker ED, Caserini C, Koopman-Verhoeff ME, Mulder RH, Felix JF, Cecil CAM
Published in: Journal of Psychiatric Research, 2021, ISSN 0022-3956
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.jpsychires.2021.05.029

GWAS on longitudinal growth traits reveals different genetic factors influencing infant, child, and adult BMI

Author(s): Alexessander Couto Alves, N. Maneka G. De Silva, Ville Karhunen, Ulla Sovio, Shikta Das, H. Rob Taal, Nicole M. Warrington, Alexandra M. Lewin, Marika Kaakinen, Diana L. Cousminer, Elisabeth Thiering, Nicholas J. Timpson, Tom A. Bond, Estelle Lowry, Christopher D. Brown, Xavier Estivill, Virpi Lindi, Jonathan P. Bradfield, Frank Geller, Doug Speed, Lachlan J. M. Coin, Marie Loh, Sheila J. Barton,
Published in: Science Advances, Issue 5/9, 2019, Page(s) eaaw3095, ISSN 2375-2548
Publisher: AAAS
DOI: 10.1126/sciadv.aaw3095

Recognizing, reporting and reducing the data curation debt of cohort studies

Author(s): Oliver W Butters, Rebecca C Wilson, Paul R Burton
Published in: International Journal of Epidemiology, 2020, Page(s) 1-8, ISSN 1464-3685
Publisher: IEA
DOI: 10.1093/ije/dyaa087

Possible Modifiers of the Association Between Change in Weight Status From Child Through Adult Ages and Later Risk of Type 2 Diabetes

Author(s): Lise G. Bjerregaard, Niko Wasenius, Rozenn Nedelec, Line K. Gjærde, Lars Ängquist, Karl-Heinz Herzig, Gorm B. Jensen, Erik L. Mortensen, Merete Osler, Kim Overvad, Tea Skaaby, Anne Tjønneland, Thorkild I.A. Sørensen, Marjo-Riitta Järvelin, Johan G. Eriksson, Sylvain Sebert, Jennifer L. Baker
Published in: Diabetes Care, Issue 43/5, 2020, Page(s) 1000-1007, ISSN 0149-5992
Publisher: American Diabetes Association
DOI: 10.2337/dc19-1726

Lifelines NEXT: a prospective birth cohort adding the next generation to the three-generation Lifelines cohort study

Author(s): Willemijn D. B. Warmink-Perdijk, Lilian L. Peters, Ettje F. Tigchelaar, Jackie A. M. Dekens, Soesma A. Jankipersadsing, Alexandra Zhernakova, Willem J. R. Bossers, Jan Sikkema, Ank de Jonge, Sijmen A. Reijneveld, Henkjan J. Verkade, Gerard H. Koppelman, Cisca Wijmenga, Folkert Kuipers, Sicco A. Scherjon
Published in: European Journal of Epidemiology, Issue 35/2, 2020, Page(s) 157-168, ISSN 0393-2990
Publisher: Kluwer Academic Publishers
DOI: 10.1007/s10654-020-00614-7

Reply to: Early-life respiratory infections and pre-adult asthma: could there be an interaction and differential misclassification?

Author(s): van Meel ER, Duijts L; participating authors of the meta-analysis “Early-life respiratory tract infections and the risk of school-age lower lung function and asthma”.
Published in: European Respiratory Journal, 2022, ISSN 0903-1936
Publisher: European Respiratory Society
DOI: 10.1183/13993003.01384-2022

Global access and patient safety in the transition to environmentally friendly respiratory inhalers: the Global Initiative for Asthma perspective.

Author(s): Levy ML, Bateman ED, Allan K, Bacharier LB, Bonini M, Boulet LP, Bourdin A, Brightling C, Brusselle G, Buhl R, Chakaya MJ, Cruz AA, Drazen J, Ducharme FM, Duijts L, Fleming L, Inoue H, Ko FWS, Krishnan JA, Masekela R, Mortimer K, Pitrez P, Salvi S, Sheikh A, Reddel HK, Yorgancıoğlu A.
Published in: Lancet, 2023, ISSN 0140-6736
Publisher: The Lancet Publishing Group
DOI: 10.1016/s0140-6736(23)01358-2

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