Controlling mIcRobiomes CircuLations for bEtter food Systems

Livrables

Report on microbiomes dynamics, circulations and association with performances across the poultry & swine food chains, observational phase

The report will include data regarding identification and setup of labinthefield sites and results of the longitudinal monitoring of microbiomes and covariates across poultry and swine food chains during the observational phase Tasks 41 42 and 45

Report on microbiomes dynamics, circulations and association with performances across plant food chains, observation phase

The report will include data regarding identification and setup of labinthefield sites and results of the longitudinal monitoring of microbiomes and covariates across plant food chains during the observation phase Tasks 32 and 33

Report on resistome dynamics and evolution across actors of CIRCLES food chains, poultry and swine, observation phase

The report will include data obtained from the resistome analysis on samples collected across all CIRCLES food chains poultry swine WP34 during the observational phases

Report on environmental metagenomes across CIRCLES food chains, plant, poultry and swine, observation phase

The report will include data obtained from the metagenome analysis on environmental samples collected across all CIRCLES food chains plant poultry swine WP34 during the observational phases

Publications

Impact of Plastic Debris on the Gut Microbiota of Caretta caretta From Northwestern Adriatic Sea

Auteurs: Elena Biagi; Elena Biagi; Margherita Musella; Margherita Musella; Giorgia Palladino; Giorgia Palladino; Valeria Angelini; Sauro Pari; Chiara Roncari; Chiara Roncari; Daniel Scicchitano; Daniel Scicchitano; Simone Rampelli; Silvia Franzellitti; Silvia Franzellitti; Marco Candela; Marco Candela
Publié dans: Frontiers in Marine Science, Numéro 1, 2021, ISSN 2296-7745
Éditeur: FRONTIERS MEDIA SA
DOI: 10.3389/fmars.2021.637030

G-Tric: generating three-way synthetic datasets with triclustering solutions.

Auteurs: João Lobo; Rui Henriques; Sara C. Madeira
Publié dans: BMC Bioinformatics, Vol 22, Iss 1, Pp 1-28 (2021), Numéro 2, 2021, ISSN 1471-2105
Éditeur: BioMed Central
DOI: 10.1186/s12859-020-03925-4

Impact of Marine Aquaculture on the Microbiome Associated with Nearby Holobionts: The Case of Patella caerulea Living in Proximity of Sea Bream Aquaculture Cages

Auteurs: Giorgia Palladino; Simone Rampelli; Daniel Scicchitano; Margherita Musella; Grazia Marina Quero; Fiorella Prada; Arianna Mancuso; Anne Mette Seyfarth; Silvia Turroni; Marco Candela; Elena Biagi
Publié dans: Microorganisms, 2021, ISSN 2076-2607
Éditeur: MDPI
DOI: 10.3390/microorganisms9020455

Seasonal Changes in Microbial Communities Associated With the Jewel Anemone Corynactis viridis.

Auteurs: Giorgia Palladino; Giorgia Palladino; Elena Biagi; Elena Biagi; Simone Rampelli; Margherita Musella; Margherita Musella; Federica D’Amico; Federica D’Amico; Silvia Turroni; Patrizia Brigidi; Gian Marco Luna; Marco Candela; Marco Candela
Publié dans: Frontiers in Marine Science, 2021, ISSN 2296-7745
Éditeur: Frontiers Media S.A.
DOI: 10.3389/fmars.2021.627585

Host-Associated Bacterial Succession during the Early Embryonic Stages and First Feeding in Farmed Gilthead Sea Bream ( Sparus aurata ).

Auteurs: Eleni Nikouli; Alexandra Meziti; Efthimia Antonopoulou; Eleni Mente; Konstantinos Ar. Kormas
Publié dans: Genes, Vol 10, Iss 7, p 483 (2019), Numéro 2, 2019, ISSN 2073-4425
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/genes10070483

Timely Control of Gastrointestinal Eubiosis: A Strategic Pillar of Pig Health

Auteurs: Paolo Trevisi, Diana Luise, Federico Correa and Paolo Bosi
Publié dans: Microorganisms, Numéro 9(2):313, 2021, ISSN 2076-2607
Éditeur: MDPI
DOI: 10.3390/microorganisms9020313

Tissue-scale microbiota of the Mediterranean mussel (Mytilus galloprovincialis) and its relationship with the environment

Auteurs: Margherita Musella, Rasika Wathsala, Teresa Tavella, Simone Rampelli, Monica Barone, Giorgia Palladino, Elena Biagi, Patrizia Brigidi, Silvia Turroni, Silvia Franzellitti, Marco Candela
Publié dans: Science of The Total Environment, Numéro 717, 2020, Page(s) 137209, ISSN 0048-9697
Éditeur: Elsevier BV
DOI: 10.1016/j.scitotenv.2020.137209

Nitrogen Fertilizers Shape the Composition and Predicted Functions of the Microbiota of Field-Grown Tomato Plants

Auteurs: Federica Caradonia, Domenico Ronga, Marcello Catellani, Cleber Vinícius Giaretta Azevedo, Rodrigo Alegria Terrazas, Senga Robertson-Albertyn, Enrico Francia, Davide Bulgarelli
Publié dans: Phytobiomes Journal, Numéro 3/4, 2019, Page(s) 315-325, ISSN 2471-2906
Éditeur: APS Publications
DOI: 10.1094/pbiomes-06-19-0028-r

Composition and biodiversity of soil and root-associated microbiome in Vitis vinifera cultivar Lambrusco distinguish the microbial terroir of the Lambrusco DOC protected designation of origin area on a local scale

Auteurs: Nanetti, Enrico;Palladino, Giorgia;Scicchitano, Daniel;Trapella, Giulia;Cinti, Nicolò;Fabbrini, Marco;Cozzi, Alice;Accetta, Giovanni;Tassini, Carlo;Iannaccone, Luigi;Candela, Marco;Rampelli, Simone
Publié dans: FRONTIERS IN MICROBIOLOGY, 2023, ISSN 1664-302X
Éditeur: Frontiers Media
DOI: 10.3389/fmicb.2023.1108036

Metagenomic shifts in mucus, tissue and skeleton of the coral Balanophyllia europaea living along a natural CO2 gradient

Auteurs: Palladino, Giorgia;Caroselli, Erik;Tavella, Teresa;D’Amico, Federica;Prada, Fiorella;Mancuso, Arianna;Franzellitti, Silvia;Rampelli, Simone;Candela, Marco;Goffredo, Stefano;Biagi, Elena
Publié dans: ISME Communications, 2022, ISSN 2730-6151
Éditeur: Springer Nature Limited
DOI: 10.1038/s43705-022-00152-1

Microbiome Research: Open Communication Today, Microbiome Applications in the Future

Auteurs: Bettina Schelkle Quentin Galand
Publié dans: Microorganisms, 2020, ISSN 2076-2607
Éditeur: MDPI
DOI: 10.3390/microorganisms8121960

Pulp and paper mill sludges decrease soil erodibility

Auteurs: Kimmo Rasa; Taina Pennanen; Krista Peltoniemi; Sannakajsa Velmala; Hannu Fritze; Janne Kaseva; Juuso Joona; Risto Uusitalo
Publié dans: Journal of Environmental Quality, Numéro 2, 2021, Page(s) 172-184, ISSN 0047-2425
Éditeur: American Society of Agronomy, Inc.
DOI: 10.1002/jeq2.20170

Defining Composition and Function of the Rhizosphere Microbiota of Barley Genotypes Exposed to Growth-Limiting Nitrogen Supplies

Auteurs: Rodrigo Alegria Terrazas , Senga Robertson-Albertyn, Aileen Mary Corral, Carmen Escudero-Martinez , Rumana Kapadia, Katharin Balbirnie-Cumming, Jenny Morris, Pete E. Hedley, Matthieu Barret, Gloria Torres-Cortes, Eric Paterson, Elizabeth M. Baggs, James Abbott, Davide Bulgarelli
Publié dans: mSystems, 2022, ISSN 2379-5077
Éditeur: American Society for Microbiology
DOI: 10.1128/msystems.00934-22

Plasticity of the Anemonia viridis microbiota in response to different levels of combined anthropogenic and environmental stresses

Auteurs: Palladino, G;Rampelli, S;Galia-Camps, C;Scicchitano, D;Trapella, G;Nanetti, E;Angelini, V;Cleo, D;Turroni, S;Corinaldesi, C;Candela, M
Publié dans: Frontiers in Marine Science, 2022, ISSN 2296-7745
Éditeur: FRONTIERS MEDIA SA
DOI: 10.3389/fmars.2022.956899

Exploring clade differentiation of the Faecalibacterium prausnitzii complex

Auteurs: Fabbrini, Marco;Candela, Marco;Turroni, Silvia;Brigidi, Patrizia;Rampelli, Simone
Publié dans: iScience, 2022, ISSN 2589-0042
Éditeur: CELL PRESS
DOI: 10.1016/j.isci.2022.105533

A footptrint of plant eco-geographic adaptation on the composition of the barley rhizosphere bacterial microbiota

Auteurs: Rodrigo Alegria Terrazas; Katharin Balbirnie-Cumming; Jenny Morris; Pete E. Hedley; Joanne Russell; Eric Paterson; Elizabeth M. Baggs; Eyal Fridman; Davide Bulgarelli
Publié dans: Scientific Reports, Vol 10, Iss 1, Pp 1-13 (2020), Numéro 1, 2020, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-020-69672-x

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