Culture-free strain-level population genomics to identify disappearing human-associated microbes in the westernized world

Publications

A step-by-step sequence-based analysis of virome enrichment protocol for freshwater and sediment samples

Author(s): Federica Pinto, Moreno Zolfo, Francesco Beghini, Federica Armanini, Francesco Asnicar, Andrea Silverj, Adriano Boscaini, Nico Salmaso, Nicola Segata
Published in: bioRxiv, 2020, ISSN 0362-4331
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2020.09.17.302836

Strong oral plaque microbiome signatures for dental implant diseases identified by strain-resolution metagenomics

Author(s): Paolo Ghensi, Paolo Manghi, Moreno Zolfo, Federica Armanini, Edoardo Pasolli, Mattia Bolzan, Alberto Bertelle, Federico Dell’Acqua, Ester Dellasega, Romina Waldner, Francesco Tessarolo, Cristiano Tomasi & Nicola Segata
Published in: NPJ BIOFILMS AND MICROBIOMES, Issue 6 (47), 2020, ISSN 2055-5008
Publisher: Springer Nature
DOI: 10.1038/s41522-020-00155-7

Intestinal Akkermansia muciniphila predicts clinical response to PD-1 blockade in patients with advanced non-small-cell lung cancer

Author(s): Derosa, Lisa;Routy, Bertrand;Thomas, Andrew Maltez;Iebba, Valerio;Zalcman, Gerard;Friard, Sylvie;Mazieres, Julien;Audigier-Valette, Clarisse;Moro-Sibilot, Denis;Goldwasser, François;Silva, Carolina Alves Costa;Terrisse, Safae;Bonvalet, Melodie;Scherpereel, Arnaud;Pegliasco, Hervé;Richard, Corentin;Ghiringhelli, François;Elkrief, Arielle;Desilets, Antoine;Blanc-Durand, Felix;Cumbo, Fabio;Blanco,
Published in: Nature Medicine, Issue 10788956, 2022, ISSN 1078-8956
Publisher: Nature Publishing Group
DOI: 10.1038/s41591-021-01655-5

Reconstruction of ancient microbial genomes from the human gut

Author(s): Marsha C. Wibowo, Zhen Yang, Maxime Borry, Alexander Hübner, Kun D. Huang, Braden T. Tierney, Samuel Zimmerman, Francisco Barajas-Olmos, Cecilia Contreras-Cubas, Humberto García-Ortiz, Angélica Martínez-Hernández, Jacob M. Luber, Philipp Kirstahler, Tre Blohm, Francis E. Smiley, Richard Arnold, Sonia A. Ballal, Sünje Johanna Pamp, Julia Russ, Frank Maixner, Omar Rota-Stabelli, Nicola Segata,
Published in: Nature, Issue 594/7862, 2021, Page(s) 234-239, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/s41586-021-03532-0

Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period

Author(s): Frank Maixner, Mohamed S. Sarhan, Kun D. Huang, Adrian Tett, Alexander Schoenafinger, Stefania Zingale, Aitor Blanco-Míguez, Paolo Manghi, Jan Cemper-Kiesslich, Wilfried Rosendahl, Ulrike Kusebauch, Seamus R. Morrone, Michael R. Hoopmann, Omar Rota-Stabelli, Thomas Rattei, Robert L. Moritz, Klaus Oeggl, Nicola Segata, Albert Zink, Hans Reschreiter, Kerstin Kowarik
Published in: Current Biology, 2021, ISSN 0960-9822
Publisher: Cell Press
DOI: 10.1016/j.cub.2021.09.031

Human postprandial responses to food and potential for precision nutrition

Author(s): Sarah E. Berry, Ana M. Valdes, David A. Drew, Francesco Asnicar, Mohsen Mazidi, Jonathan Wolf, Joan Capdevila, George Hadjigeorgiou, Richard Davies, Haya Al Khatib, Christopher Bonnett, Sajaysurya Ganesh, Elco Bakker, Deborah Hart, Massimo Mangino, Jordi Merino, Inbar Linenberg, Patrick Wyatt, Jose M. Ordovas, Christopher D. Gardner, Linda M. Delahanty, Andrew T. Chan, Nicola Segata, Paul W. Frank
Published in: Nature Medicine, Issue 26/6, 2020, Page(s) 964-973, ISSN 1078-8956
Publisher: Nature Publishing Group
DOI: 10.1038/s41591-020-0934-0

Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases

Author(s): Gianluca Ianiro, Michal Punčochář, Nicolai Karcher, Serena Porcari, Federica Armanini, Francesco Asnicar, Francesco Beghini, Aitor Blanco-Míguez, Fabio Cumbo, Paolo Manghi, Federica Pinto, Luca Masucci, Gianluca Quaranta, Silvia De Giorgi, Giusi Desirè Sciumè, Stefano Bibbò, Federica Del Chierico, Lorenza Putignani, Maurizio Sanguinetti, Antonio Gasbarrini, Mireia Valles-Colomer, Giovanni C
Published in: Nature Medicine, 2022, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/s41591-022-01964-3

Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals

Author(s): Francesco Asnicar, Sarah E. Berry, Ana M. Valdes, Long H. Nguyen, Gianmarco Piccinno, David A. Drew, Emily Leeming, Rachel Gibson, Caroline Le Roy, Haya Al Khatib, Lucy Francis, Mohsen Mazidi, Olatz Mompeo, Mireia Valles-Colomer, Adrian Tett, Francesco Beghini, Léonard Dubois, Davide Bazzani, Andrew Maltez Thomas, Chloe Mirzayi, Asya Khleborodova, Sehyun Oh, Rachel Hine, Christopher Bonnett, Joan
Published in: Nature Medicine, Issue 27/2, 2021, Page(s) 321-332, ISSN 1078-8956
Publisher: Nature Publishing Group
DOI: 10.1038/s41591-020-01183-8

Prevotella diversity, niches and interactions with the human host

Author(s): Adrian Tett, Edoardo Pasolli, Giulia Masetti, Danilo Ercolini, Nicola Segata
Published in: Nature Reviews Microbiology, Issue 19/9, 2021, Page(s) 585-599, ISSN 1740-1526
Publisher: Nature Publishing Group
DOI: 10.1038/s41579-021-00559-y

Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly

Author(s): Nicolai Karcher, Eleonora Nigro, Michal Punčochář, Aitor Blanco-Míguez, Matteo Ciciani, Paolo Manghi, Moreno Zolfo, Fabio Cumbo, Serena Manara, Davide Golzato, Anna Cereseto, Manimozhiyan Arumugam, Thi Phuong Nam Bui, Hanne L. P. Tytgat, Mireia Valles-Colomer, Willem M. de Vos, Nicola Segata
Published in: Genome Biology, Issue 22/1, 2021, ISSN 1474-760X
Publisher: BioMed Central
DOI: 10.1186/s13059-021-02427-7

Large scale genome reconstructions illuminate Wolbachia evolution

Author(s): Matthias Scholz, Davide Albanese, Kieran Tuohy, Claudio Donati, Nicola Segata, Omar Rota-Stabelli
Published in: Nature Communications, Issue 11/1, 2020, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-020-19016-0

The Signal and the Noise: Characteristics of Antisense RNA in Complex Microbial Communities

Author(s): Thomas Yssing Michaelsen, Jakob Brandt, Caitlin Margaret Singleton, Rasmus Hansen Kirkegaard, Johanna Wiesinger, Nicola Segata, Mads Albertsen
Published in: mSystems, Issue 5/1, 2020, ISSN 2379-5077
Publisher: American Society for Microbiology
DOI: 10.1128/msystems.00587-19

Metagenomic analysis of ancient dental calculus reveals unexplored diversity of oral archaeal Methanobrevibacter

Author(s): Lena Granehäll, Kun D. Huang, Adrian Tett, Paolo Manghi, Alice Paladin, Niall O’Sullivan, Omar Rota-Stabelli, Nicola Segata, Albert Zink, Frank Maixner
Published in: Microbiome, Issue 9/1, 2021, ISSN 2049-2618
Publisher: BioMed Central Ltd.
DOI: 10.1186/s40168-021-01132-8

Genes Encoding Microbial Acyl Coenzyme A Binding Protein/Diazepam-Binding Inhibitor Orthologs Are Rare in the Human Gut Microbiome and Show No Links to Obesity

Author(s): Andrew Maltez Thomas, Francesco Asnicar, Guido Kroemer, Nicola Segata
Published in: Applied and Environmental Microbiology, Issue 87/12, 2021, ISSN 0099-2240
Publisher: American Society for Microbiology
DOI: 10.1128/aem.00471-21

Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

Author(s): Nicolai Karcher, Edoardo Pasolli, Francesco Asnicar, Kun D. Huang, Adrian Tett, Serena Manara, Federica Armanini, Debbie Bain, Sylvia H. Duncan, Petra Louis, Moreno Zolfo, Paolo Manghi, Mireia Valles-Colomer, Roberta Raffaetà, Omar Rota-Stabelli, Maria Carmen Collado, Georg Zeller, Daniel Falush, Frank Maixner, Alan W. Walker, Curtis Huttenhower, Nicola Segata
Published in: Genome Biology, Issue 21/1, 2020, ISSN 1474-760X
Publisher: BioMed Central
DOI: 10.1186/s13059-020-02042-y

Profiling microbial strains in urban environments using metagenomic sequencing data

Author(s): Moreno Zolfo, Francesco Asnicar, Paolo Manghi, Edoardo Pasolli, Adrian Tett, Nicola Segata
Published in: Biology Direct, Issue 13/1, 2018, ISSN 1745-6150
Publisher: BioMed Central
DOI: 10.1186/s13062-018-0211-z

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome

Author(s): Pamela Ferretti, Edoardo Pasolli, Adrian Tett, Francesco Asnicar, Valentina Gorfer, Sabina Fedi, Federica Armanini, Duy Tin Truong, Serena Manara, Moreno Zolfo, Francesco Beghini, Roberto Bertorelli, Veronica De Sanctis, Ilaria Bariletti, Rosarita Canto, Rosanna Clementi, Marina Cologna, Tiziana Crifò, Giuseppina Cusumano, Stefania Gottardi, Claudia Innamorati, Caterina Masè, Daniela Postai, Dan
Published in: Cell Host & Microbe, Issue 24/1, 2018, Page(s) 133-145.e5, ISSN 1931-3128
Publisher: Cell Press
DOI: 10.1016/j.chom.2018.06.005

Draft Genome Sequences of Novel Pseudomonas , Flavobacterium , and Sediminibacterium Species Strains from a Freshwater Ecosystem

Author(s): Federica Pinto, Adrian Tett, Federica Armanini, Francesco Asnicar, Adriano Boscaini, Edoardo Pasolli, Moreno Zolfo, Claudio Donati, Nico Salmaso, Nicola Segata
Published in: Genome Announcements, Issue 6/5, 2018, ISSN 2169-8287
Publisher: ASM
DOI: 10.1128/genomea.00009-18

Draft Genome Sequence of the Planktic Cyanobacterium Tychonema bourrellyi , Isolated from Alpine Lentic Freshwater

Author(s): Federica Pinto, Adrian Tett, Federica Armanini, Francesco Asnicar, Adriano Boscaini, Edoardo Pasolli, Moreno Zolfo, Claudio Donati, Nico Salmaso, Nicola Segata
Published in: Genome Announcements, Issue 5/47, 2017, ISSN 2169-8287
Publisher: ASM
DOI: 10.1128/genomea.01294-17

On the Road to Strain-Resolved Comparative Metagenomics

Author(s): Nicola Segata
Published in: mSystems, Issue 3/2, 2018, ISSN 2379-5077
Publisher: American Society for Microbiology
DOI: 10.1128/mSystems.00190-17

Accessible, curated metagenomic data through ExperimentHub

Author(s): Edoardo Pasolli, Lucas Schiffer, Paolo Manghi, Audrey Renson, Valerie Obenchain, Duy Tin Truong, Francesco Beghini, Faizan Malik, Marcel Ramos, Jennifer B Dowd, Curtis Huttenhower, Martin Morgan, Nicola Segata, Levi Waldron
Published in: Nature Methods, Issue 14/11, 2017, Page(s) 1023-1024, ISSN 1548-7091
Publisher: Nature Publishing Group
DOI: 10.1038/nmeth.4468

Large-scale comparative metagenomics of Blastocystis, a common member of the human gut microbiome

Author(s): Francesco Beghini, Edoardo Pasolli, Tin Duy Truong, Lorenza Putignani, Simone M Cacciò, Nicola Segata
Published in: The ISME Journal, Issue 11/12, 2017, Page(s) 2848-2863, ISSN 1751-7362
Publisher: Nature Publishing Group
DOI: 10.1038/ismej.2017.139

Shotgun metagenomics, from sampling to analysis

Author(s): Christopher Quince, Alan W Walker, Jared T Simpson, Nicholas J Loman, Nicola Segata
Published in: Nature Biotechnology, Issue 35/9, 2017, Page(s) 833-844, ISSN 1087-0156
Publisher: Nature Publishing Group
DOI: 10.1038/nbt.3935

Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis

Author(s): Adrian Tett, Edoardo Pasolli, Stefania Farina, Duy Tin Truong, Francesco Asnicar, Moreno Zolfo, Francesco Beghini, Federica Armanini, Olivier Jousson, Veronica De Sanctis, Roberto Bertorelli, Giampiero Girolomoni, Mario Cristofolini, Nicola Segata
Published in: npj Biofilms and Microbiomes, Issue 3/1, 2017, ISSN 2055-5008
Publisher: Nature Publishing Group
DOI: 10.1038/s41522-017-0022-5

Whole-genome epidemiology, characterisation, and phylogenetic reconstruction of Staphylococcus aureus strains in a paediatric hospital

Author(s): Serena Manara, Edoardo Pasolli, Daniela Dolce, Novella Ravenni, Silvia Campana, Federica Armanini, Francesco Asnicar, Alessio Mengoni, Luisa Galli, Carlotta Montagnani, Elisabetta Venturini, Omar Rota-Stabelli, Guido Grandi, Giovanni Taccetti, Nicola Segata
Published in: Genome Medicine, Issue 10/1, 2018, ISSN 1756-994X
Publisher: BioMed Central
DOI: 10.1186/s13073-018-0593-7

The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations

Author(s): Adrian Tett, Kun D. Huang, Francesco Asnicar, Hannah Fehlner-Peach, Edoardo Pasolli, Nicolai Karcher, Federica Armanini, Paolo Manghi, Kevin Bonham, Moreno Zolfo, Francesca De Filippis, Cara Magnabosco, Richard Bonneau, John Lusingu, John Amuasi, Karl Reinhard, Thomas Rattei, Fredrik Boulund, Lars Engstrand, Albert Zink, Maria Carmen Collado, Dan R. Littman, Daniel Eibach, Danilo Ercolini, Omar Ro
Published in: Cell Host & Microbe, Issue 26/5, 2019, Page(s) 666-679.e7, ISSN 1931-3128
Publisher: Cell Press
DOI: 10.1016/j.chom.2019.08.018

Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle

Author(s): Edoardo Pasolli, Francesco Asnicar, Serena Manara, Moreno Zolfo, Nicolai Karcher, Federica Armanini, Francesco Beghini, Paolo Manghi, Adrian Tett, Paolo Ghensi, Maria Carmen Collado, Benjamin L. Rice, Casey DuLong, Xochitl C. Morgan, Christopher D. Golden, Christopher Quince, Curtis Huttenhower, Nicola Segata
Published in: Cell, Issue 176/3, 2019, Page(s) 649-662.e20, ISSN 0092-8674
Publisher: Cell Press
DOI: 10.1016/j.cell.2019.01.001

Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

Author(s): Andrew Maltez Thomas, Paolo Manghi, Francesco Asnicar, Edoardo Pasolli, Federica Armanini, Moreno Zolfo, Francesco Beghini, Serena Manara, Nicolai Karcher, Chiara Pozzi, Sara Gandini, Davide Serrano, Sonia Tarallo, Antonio Francavilla, Gaetano Gallo, Mario Trompetto, Giulio Ferrero, Sayaka Mizutani, Hirotsugu Shiroma, Satoshi Shiba, Tatsuhiro Shibata, Shinichi Yachida, Takuji Yamada, Jakob Wirbel,
Published in: Nature Medicine, Issue 25/4, 2019, Page(s) 667-678, ISSN 1078-8956
Publisher: Nature Publishing Group
DOI: 10.1038/s41591-019-0405-7

Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer

Author(s): Jakob Wirbel, Paul Theodor Pyl, Ece Kartal, Konrad Zych, Alireza Kashani, Alessio Milanese, Jonas S. Fleck, Anita Y. Voigt, Albert Palleja, Ruby Ponnudurai, Shinichi Sunagawa, Luis Pedro Coelho, Petra Schrotz-King, Emily Vogtmann, Nina Habermann, Emma Niméus, Andrew M. Thomas, Paolo Manghi, Sara Gandini, Davide Serrano, Sayaka Mizutani, Hirotsugu Shiroma, Satoshi Shiba, Tatsuhiro Shibata, Shinich
Published in: Nature Medicine, Issue 25/4, 2019, Page(s) 679-689, ISSN 1078-8956
Publisher: Nature Publishing Group
DOI: 10.1038/s41591-019-0406-6

The short-term impact of probiotic consumption on the oral cavity microbiome

Author(s): Erik Dassi, Pamela Ferretti, Giuseppina Covello, Roberto Bertorelli, Michela A. Denti, Veronica De Sanctis, Adrian Tett, Nicola Segata
Published in: Scientific Reports, Issue 8/1, 2018, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-018-28491-x

Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples

Author(s): Sonia Tarallo, Giulio Ferrero, Gaetano Gallo, Antonio Francavilla, Giuseppe Clerico, Alberto Realis Luc, Paolo Manghi, Andrew Maltez Thomas, Paolo Vineis, Nicola Segata, Barbara Pardini, Alessio Naccarati, Francesca Cordero
Published in: mSystems, Issue 4/5, 2019, ISSN 2379-5077
Publisher: ASM
DOI: 10.1128/msystems.00289-19

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Author(s): Evan Bolyen, Jai Ram Rideout, Matthew R. Dillon, Nicholas A. Bokulich, Christian C. Abnet, Gabriel A. Al-Ghalith, Harriet Alexander, Eric J. Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E. Bisanz, Kyle Bittinger, Asker Brejnrod, Colin J. Brislawn, C. Titus Brown, Benjamin J. Callahan, Andrés Mauricio Caraballo-Rodríguez, John Chase, Emily K. Cope, Ricardo Da Silva, Christian D
Published in: Nature Biotechnology, Issue 37/8, 2019, Page(s) 852-857, ISSN 1087-0156
Publisher: Nature Publishing Group
DOI: 10.1038/s41587-019-0209-9

Distinct Polysaccharide Utilization Profiles of Human Intestinal Prevotella copri Isolates

Author(s): Hannah Fehlner-Peach, Cara Magnabosco, Varsha Raghavan, Jose U. Scher, Adrian Tett, Laura M. Cox, Claire Gottsegen, Aaron Watters, John D. Wiltshire-Gordon, Nicola Segata, Richard Bonneau, Dan R. Littman
Published in: Cell Host & Microbe, Issue 26/5, 2019, Page(s) 680-690.e5, ISSN 1931-3128
Publisher: Cell Press
DOI: 10.1016/j.chom.2019.10.013

At the forefront of the sequencing revolution—notes from the RNGS19 conference

Author(s): Sander Wuyts, Nicola Segata
Published in: Genome Biology, Issue 20/1, 2019, ISSN 1474-760X
Publisher: Springer Nature
DOI: 10.1186/s13059-019-1714-3

Multiple levels of the unknown in microbiome research

Author(s): Andrew Maltez Thomas, Nicola Segata
Published in: BMC Biology, Issue 17/1, 2019, ISSN 1741-7007
Publisher: BioMed Central
DOI: 10.1186/s12915-019-0667-z

Microbial strain-level population structure and genetic diversity from metagenomes

Author(s): Duy Tin Truong, Adrian Tett, Edoardo Pasolli, Curtis Huttenhower, Nicola Segata
Published in: Genome Research, Issue 27/4, 2017, Page(s) 626-638, ISSN 1088-9051
Publisher: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gr.216242.116

Detecting contamination in viromes using ViromeQC

Author(s): Moreno Zolfo, Federica Pinto, Francesco Asnicar, Paolo Manghi, Adrian Tett, Frederic D. Bushman, Nicola Segata
Published in: Nature Biotechnology, Issue 37/12, 2019, Page(s) 1408-1412, ISSN 1087-0156
Publisher: Nature Publishing Group
DOI: 10.1038/s41587-019-0334-5

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0

Author(s): Francesco Asnicar, Andrew Maltez Thomas, Francesco Beghini, Claudia Mengoni, Serena Manara, Paolo Manghi, Qiyun Zhu, Mattia Bolzan, Fabio Cumbo, Uyen May, Jon G. Sanders, Moreno Zolfo, Evguenia Kopylova, Edoardo Pasolli, Rob Knight, Siavash Mirarab, Curtis Huttenhower, Nicola Segata
Published in: Nature Communications, Issue 11/1, 2020, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-020-16366-7

Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

Author(s): Serena Manara, Francesco Asnicar, Francesco Beghini, Davide Bazzani, Fabio Cumbo, Moreno Zolfo, Eleonora Nigro, Nicolai Karcher, Paolo Manghi, Marisa Isabell Metzger, Edoardo Pasolli, Nicola Segata
Published in: Genome Biology, Issue 20/1, 2019, ISSN 1474-760X
Publisher: BioMed Central
DOI: 10.1186/s13059-019-1923-9

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

Author(s): Francesco Beghini, Lauren J McIver, Aitor Blanco-Míguez, Leonard Dubois, Francesco Asnicar, Sagun Maharjan, Ana Mailyan, Paolo Manghi, Matthias Scholz, Andrew Maltez Thomas, Mireia Valles-Colomer, George Weingart, Yancong Zhang, Moreno Zolfo, Curtis Huttenhower, Eric A Franzosa, Nicola Segata
Published in: eLife, Issue 10, 2021, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/elife.65088

A unified catalog of 204,938 reference genomes from the human gut microbiome

Author(s): Alexandre Almeida, Stephen Nayfach, Miguel Boland, Francesco Strozzi, Martin Beracochea, Zhou Jason Shi, Katherine S. Pollard, Ekaterina Sakharova, Donovan H. Parks, Philip Hugenholtz, Nicola Segata, Nikos C. Kyrpides, Robert D. Finn
Published in: Nature Biotechnology, Issue 39/1, 2021, Page(s) 105-114, ISSN 1087-0156
Publisher: Nature Publishing Group
DOI: 10.1038/s41587-020-0603-3

Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma.

Author(s): Karla A. Lee, Andrew Maltez Thomas, Laura A. Bolte, Johannes R. Björk, Laura Kist de Ruijter, Federica Armanini, Francesco Asnicar, Aitor Blanco-Miguez, Ruth Board, Neus Calbet-Llopart, Lisa Derosa, Nathalie Dhomen, Kelly Brooks, Mark Harland, Mark Harries, Emily R. Leeming, Paul Lorigan, Paolo Manghi, Richard Marais, Julia Newton-Bishop, Luigi Nezi, Federica Pinto, Miriam Potrony, Susana Puig, P
Published in: Nature Medicine, Issue 10788956, 2022, ISSN 1078-8956
Publisher: Nature Publishing Group
DOI: 10.1038/s41591-022-01695-5

Blue poo: impact of gut transit time on the gut microbiome using a novel marker

Author(s): Francesco Asnicar, Emily R Leeming, Eirini Dimidi, Mohsen Mazidi, Paul W Franks, Haya Al Khatib, Ana M Valdes, Richard Davies, Elco Bakker, Lucy Francis, Andrew Chan, Rachel Gibson, George Hadjigeorgiou, Jonathan Wolf, Timothy D Spector, Nicola Segata, Sarah E Berry
Published in: Gut, Issue 70/9, 2021, Page(s) 1665-1674, ISSN 0017-5749
Publisher: BMJ Publishing Group
DOI: 10.1136/gutjnl-2020-323877

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