Culture-free strain-level population genomics to identify disappearing human-associated microbes in the westernized world

Publikacje

A step-by-step sequence-based analysis of virome enrichment protocol for freshwater and sediment samples

Autorzy: Federica Pinto, Moreno Zolfo, Francesco Beghini, Federica Armanini, Francesco Asnicar, Andrea Silverj, Adriano Boscaini, Nico Salmaso, Nicola Segata
Opublikowane w: bioRxiv, 2020, ISSN 0362-4331
Wydawca: Cold Spring Harbor Laboratory
DOI: 10.1101/2020.09.17.302836

Strong oral plaque microbiome signatures for dental implant diseases identified by strain-resolution metagenomics

Autorzy: Paolo Ghensi, Paolo Manghi, Moreno Zolfo, Federica Armanini, Edoardo Pasolli, Mattia Bolzan, Alberto Bertelle, Federico Dell’Acqua, Ester Dellasega, Romina Waldner, Francesco Tessarolo, Cristiano Tomasi & Nicola Segata
Opublikowane w: NPJ BIOFILMS AND MICROBIOMES, Numer 6 (47), 2020, ISSN 2055-5008
Wydawca: Springer Nature
DOI: 10.1038/s41522-020-00155-7

Intestinal Akkermansia muciniphila predicts clinical response to PD-1 blockade in patients with advanced non-small-cell lung cancer

Autorzy: Derosa, Lisa;Routy, Bertrand;Thomas, Andrew Maltez;Iebba, Valerio;Zalcman, Gerard;Friard, Sylvie;Mazieres, Julien;Audigier-Valette, Clarisse;Moro-Sibilot, Denis;Goldwasser, François;Silva, Carolina Alves Costa;Terrisse, Safae;Bonvalet, Melodie;Scherpereel, Arnaud;Pegliasco, Hervé;Richard, Corentin;Ghiringhelli, François;Elkrief, Arielle;Desilets, Antoine;Blanc-Durand, Felix;Cumbo, Fabio;Blanco,
Opublikowane w: Nature Medicine, Numer 10788956, 2022, ISSN 1078-8956
Wydawca: Nature Publishing Group
DOI: 10.1038/s41591-021-01655-5

Reconstruction of ancient microbial genomes from the human gut

Autorzy: Marsha C. Wibowo, Zhen Yang, Maxime Borry, Alexander Hübner, Kun D. Huang, Braden T. Tierney, Samuel Zimmerman, Francisco Barajas-Olmos, Cecilia Contreras-Cubas, Humberto García-Ortiz, Angélica Martínez-Hernández, Jacob M. Luber, Philipp Kirstahler, Tre Blohm, Francis E. Smiley, Richard Arnold, Sonia A. Ballal, Sünje Johanna Pamp, Julia Russ, Frank Maixner, Omar Rota-Stabelli, Nicola Segata,
Opublikowane w: Nature, Numer 594/7862, 2021, Strona(/y) 234-239, ISSN 0028-0836
Wydawca: Nature Publishing Group
DOI: 10.1038/s41586-021-03532-0

Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period

Autorzy: Frank Maixner, Mohamed S. Sarhan, Kun D. Huang, Adrian Tett, Alexander Schoenafinger, Stefania Zingale, Aitor Blanco-Míguez, Paolo Manghi, Jan Cemper-Kiesslich, Wilfried Rosendahl, Ulrike Kusebauch, Seamus R. Morrone, Michael R. Hoopmann, Omar Rota-Stabelli, Thomas Rattei, Robert L. Moritz, Klaus Oeggl, Nicola Segata, Albert Zink, Hans Reschreiter, Kerstin Kowarik
Opublikowane w: Current Biology, 2021, ISSN 0960-9822
Wydawca: Cell Press
DOI: 10.1016/j.cub.2021.09.031

Human postprandial responses to food and potential for precision nutrition

Autorzy: Sarah E. Berry, Ana M. Valdes, David A. Drew, Francesco Asnicar, Mohsen Mazidi, Jonathan Wolf, Joan Capdevila, George Hadjigeorgiou, Richard Davies, Haya Al Khatib, Christopher Bonnett, Sajaysurya Ganesh, Elco Bakker, Deborah Hart, Massimo Mangino, Jordi Merino, Inbar Linenberg, Patrick Wyatt, Jose M. Ordovas, Christopher D. Gardner, Linda M. Delahanty, Andrew T. Chan, Nicola Segata, Paul W. Frank
Opublikowane w: Nature Medicine, Numer 26/6, 2020, Strona(/y) 964-973, ISSN 1078-8956
Wydawca: Nature Publishing Group
DOI: 10.1038/s41591-020-0934-0

Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases

Autorzy: Gianluca Ianiro, Michal Punčochář, Nicolai Karcher, Serena Porcari, Federica Armanini, Francesco Asnicar, Francesco Beghini, Aitor Blanco-Míguez, Fabio Cumbo, Paolo Manghi, Federica Pinto, Luca Masucci, Gianluca Quaranta, Silvia De Giorgi, Giusi Desirè Sciumè, Stefano Bibbò, Federica Del Chierico, Lorenza Putignani, Maurizio Sanguinetti, Antonio Gasbarrini, Mireia Valles-Colomer, Giovanni C
Opublikowane w: Nature Medicine, 2022, ISSN 0028-0836
Wydawca: Nature Publishing Group
DOI: 10.1038/s41591-022-01964-3

Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals

Autorzy: Francesco Asnicar, Sarah E. Berry, Ana M. Valdes, Long H. Nguyen, Gianmarco Piccinno, David A. Drew, Emily Leeming, Rachel Gibson, Caroline Le Roy, Haya Al Khatib, Lucy Francis, Mohsen Mazidi, Olatz Mompeo, Mireia Valles-Colomer, Adrian Tett, Francesco Beghini, Léonard Dubois, Davide Bazzani, Andrew Maltez Thomas, Chloe Mirzayi, Asya Khleborodova, Sehyun Oh, Rachel Hine, Christopher Bonnett, Joan
Opublikowane w: Nature Medicine, Numer 27/2, 2021, Strona(/y) 321-332, ISSN 1078-8956
Wydawca: Nature Publishing Group
DOI: 10.1038/s41591-020-01183-8

Prevotella diversity, niches and interactions with the human host

Autorzy: Adrian Tett, Edoardo Pasolli, Giulia Masetti, Danilo Ercolini, Nicola Segata
Opublikowane w: Nature Reviews Microbiology, Numer 19/9, 2021, Strona(/y) 585-599, ISSN 1740-1526
Wydawca: Nature Publishing Group
DOI: 10.1038/s41579-021-00559-y

Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly

Autorzy: Nicolai Karcher, Eleonora Nigro, Michal Punčochář, Aitor Blanco-Míguez, Matteo Ciciani, Paolo Manghi, Moreno Zolfo, Fabio Cumbo, Serena Manara, Davide Golzato, Anna Cereseto, Manimozhiyan Arumugam, Thi Phuong Nam Bui, Hanne L. P. Tytgat, Mireia Valles-Colomer, Willem M. de Vos, Nicola Segata
Opublikowane w: Genome Biology, Numer 22/1, 2021, ISSN 1474-760X
Wydawca: BioMed Central
DOI: 10.1186/s13059-021-02427-7

Large scale genome reconstructions illuminate Wolbachia evolution

Autorzy: Matthias Scholz, Davide Albanese, Kieran Tuohy, Claudio Donati, Nicola Segata, Omar Rota-Stabelli
Opublikowane w: Nature Communications, Numer 11/1, 2020, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-020-19016-0

The Signal and the Noise: Characteristics of Antisense RNA in Complex Microbial Communities

Autorzy: Thomas Yssing Michaelsen, Jakob Brandt, Caitlin Margaret Singleton, Rasmus Hansen Kirkegaard, Johanna Wiesinger, Nicola Segata, Mads Albertsen
Opublikowane w: mSystems, Numer 5/1, 2020, ISSN 2379-5077
Wydawca: American Society for Microbiology
DOI: 10.1128/msystems.00587-19

Metagenomic analysis of ancient dental calculus reveals unexplored diversity of oral archaeal Methanobrevibacter

Autorzy: Lena Granehäll, Kun D. Huang, Adrian Tett, Paolo Manghi, Alice Paladin, Niall O’Sullivan, Omar Rota-Stabelli, Nicola Segata, Albert Zink, Frank Maixner
Opublikowane w: Microbiome, Numer 9/1, 2021, ISSN 2049-2618
Wydawca: BioMed Central Ltd.
DOI: 10.1186/s40168-021-01132-8

Genes Encoding Microbial Acyl Coenzyme A Binding Protein/Diazepam-Binding Inhibitor Orthologs Are Rare in the Human Gut Microbiome and Show No Links to Obesity

Autorzy: Andrew Maltez Thomas, Francesco Asnicar, Guido Kroemer, Nicola Segata
Opublikowane w: Applied and Environmental Microbiology, Numer 87/12, 2021, ISSN 0099-2240
Wydawca: American Society for Microbiology
DOI: 10.1128/aem.00471-21

Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

Autorzy: Nicolai Karcher, Edoardo Pasolli, Francesco Asnicar, Kun D. Huang, Adrian Tett, Serena Manara, Federica Armanini, Debbie Bain, Sylvia H. Duncan, Petra Louis, Moreno Zolfo, Paolo Manghi, Mireia Valles-Colomer, Roberta Raffaetà, Omar Rota-Stabelli, Maria Carmen Collado, Georg Zeller, Daniel Falush, Frank Maixner, Alan W. Walker, Curtis Huttenhower, Nicola Segata
Opublikowane w: Genome Biology, Numer 21/1, 2020, ISSN 1474-760X
Wydawca: BioMed Central
DOI: 10.1186/s13059-020-02042-y

Profiling microbial strains in urban environments using metagenomic sequencing data

Autorzy: Moreno Zolfo, Francesco Asnicar, Paolo Manghi, Edoardo Pasolli, Adrian Tett, Nicola Segata
Opublikowane w: Biology Direct, Numer 13/1, 2018, ISSN 1745-6150
Wydawca: BioMed Central
DOI: 10.1186/s13062-018-0211-z

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome

Autorzy: Pamela Ferretti, Edoardo Pasolli, Adrian Tett, Francesco Asnicar, Valentina Gorfer, Sabina Fedi, Federica Armanini, Duy Tin Truong, Serena Manara, Moreno Zolfo, Francesco Beghini, Roberto Bertorelli, Veronica De Sanctis, Ilaria Bariletti, Rosarita Canto, Rosanna Clementi, Marina Cologna, Tiziana Crifò, Giuseppina Cusumano, Stefania Gottardi, Claudia Innamorati, Caterina Masè, Daniela Postai, Dan
Opublikowane w: Cell Host & Microbe, Numer 24/1, 2018, Strona(/y) 133-145.e5, ISSN 1931-3128
Wydawca: Cell Press
DOI: 10.1016/j.chom.2018.06.005

Draft Genome Sequences of Novel Pseudomonas , Flavobacterium , and Sediminibacterium Species Strains from a Freshwater Ecosystem

Autorzy: Federica Pinto, Adrian Tett, Federica Armanini, Francesco Asnicar, Adriano Boscaini, Edoardo Pasolli, Moreno Zolfo, Claudio Donati, Nico Salmaso, Nicola Segata
Opublikowane w: Genome Announcements, Numer 6/5, 2018, ISSN 2169-8287
Wydawca: ASM
DOI: 10.1128/genomea.00009-18

Draft Genome Sequence of the Planktic Cyanobacterium Tychonema bourrellyi , Isolated from Alpine Lentic Freshwater

Autorzy: Federica Pinto, Adrian Tett, Federica Armanini, Francesco Asnicar, Adriano Boscaini, Edoardo Pasolli, Moreno Zolfo, Claudio Donati, Nico Salmaso, Nicola Segata
Opublikowane w: Genome Announcements, Numer 5/47, 2017, ISSN 2169-8287
Wydawca: ASM
DOI: 10.1128/genomea.01294-17

On the Road to Strain-Resolved Comparative Metagenomics

Autorzy: Nicola Segata
Opublikowane w: mSystems, Numer 3/2, 2018, ISSN 2379-5077
Wydawca: American Society for Microbiology
DOI: 10.1128/mSystems.00190-17

Accessible, curated metagenomic data through ExperimentHub

Autorzy: Edoardo Pasolli, Lucas Schiffer, Paolo Manghi, Audrey Renson, Valerie Obenchain, Duy Tin Truong, Francesco Beghini, Faizan Malik, Marcel Ramos, Jennifer B Dowd, Curtis Huttenhower, Martin Morgan, Nicola Segata, Levi Waldron
Opublikowane w: Nature Methods, Numer 14/11, 2017, Strona(/y) 1023-1024, ISSN 1548-7091
Wydawca: Nature Publishing Group
DOI: 10.1038/nmeth.4468

Large-scale comparative metagenomics of Blastocystis, a common member of the human gut microbiome

Autorzy: Francesco Beghini, Edoardo Pasolli, Tin Duy Truong, Lorenza Putignani, Simone M Cacciò, Nicola Segata
Opublikowane w: The ISME Journal, Numer 11/12, 2017, Strona(/y) 2848-2863, ISSN 1751-7362
Wydawca: Nature Publishing Group
DOI: 10.1038/ismej.2017.139

Shotgun metagenomics, from sampling to analysis

Autorzy: Christopher Quince, Alan W Walker, Jared T Simpson, Nicholas J Loman, Nicola Segata
Opublikowane w: Nature Biotechnology, Numer 35/9, 2017, Strona(/y) 833-844, ISSN 1087-0156
Wydawca: Nature Publishing Group
DOI: 10.1038/nbt.3935

Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis

Autorzy: Adrian Tett, Edoardo Pasolli, Stefania Farina, Duy Tin Truong, Francesco Asnicar, Moreno Zolfo, Francesco Beghini, Federica Armanini, Olivier Jousson, Veronica De Sanctis, Roberto Bertorelli, Giampiero Girolomoni, Mario Cristofolini, Nicola Segata
Opublikowane w: npj Biofilms and Microbiomes, Numer 3/1, 2017, ISSN 2055-5008
Wydawca: Nature Publishing Group
DOI: 10.1038/s41522-017-0022-5

Whole-genome epidemiology, characterisation, and phylogenetic reconstruction of Staphylococcus aureus strains in a paediatric hospital

Autorzy: Serena Manara, Edoardo Pasolli, Daniela Dolce, Novella Ravenni, Silvia Campana, Federica Armanini, Francesco Asnicar, Alessio Mengoni, Luisa Galli, Carlotta Montagnani, Elisabetta Venturini, Omar Rota-Stabelli, Guido Grandi, Giovanni Taccetti, Nicola Segata
Opublikowane w: Genome Medicine, Numer 10/1, 2018, ISSN 1756-994X
Wydawca: BioMed Central
DOI: 10.1186/s13073-018-0593-7

The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations

Autorzy: Adrian Tett, Kun D. Huang, Francesco Asnicar, Hannah Fehlner-Peach, Edoardo Pasolli, Nicolai Karcher, Federica Armanini, Paolo Manghi, Kevin Bonham, Moreno Zolfo, Francesca De Filippis, Cara Magnabosco, Richard Bonneau, John Lusingu, John Amuasi, Karl Reinhard, Thomas Rattei, Fredrik Boulund, Lars Engstrand, Albert Zink, Maria Carmen Collado, Dan R. Littman, Daniel Eibach, Danilo Ercolini, Omar Ro
Opublikowane w: Cell Host & Microbe, Numer 26/5, 2019, Strona(/y) 666-679.e7, ISSN 1931-3128
Wydawca: Cell Press
DOI: 10.1016/j.chom.2019.08.018

Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle

Autorzy: Edoardo Pasolli, Francesco Asnicar, Serena Manara, Moreno Zolfo, Nicolai Karcher, Federica Armanini, Francesco Beghini, Paolo Manghi, Adrian Tett, Paolo Ghensi, Maria Carmen Collado, Benjamin L. Rice, Casey DuLong, Xochitl C. Morgan, Christopher D. Golden, Christopher Quince, Curtis Huttenhower, Nicola Segata
Opublikowane w: Cell, Numer 176/3, 2019, Strona(/y) 649-662.e20, ISSN 0092-8674
Wydawca: Cell Press
DOI: 10.1016/j.cell.2019.01.001

Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

Autorzy: Andrew Maltez Thomas, Paolo Manghi, Francesco Asnicar, Edoardo Pasolli, Federica Armanini, Moreno Zolfo, Francesco Beghini, Serena Manara, Nicolai Karcher, Chiara Pozzi, Sara Gandini, Davide Serrano, Sonia Tarallo, Antonio Francavilla, Gaetano Gallo, Mario Trompetto, Giulio Ferrero, Sayaka Mizutani, Hirotsugu Shiroma, Satoshi Shiba, Tatsuhiro Shibata, Shinichi Yachida, Takuji Yamada, Jakob Wirbel,
Opublikowane w: Nature Medicine, Numer 25/4, 2019, Strona(/y) 667-678, ISSN 1078-8956
Wydawca: Nature Publishing Group
DOI: 10.1038/s41591-019-0405-7

Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer

Autorzy: Jakob Wirbel, Paul Theodor Pyl, Ece Kartal, Konrad Zych, Alireza Kashani, Alessio Milanese, Jonas S. Fleck, Anita Y. Voigt, Albert Palleja, Ruby Ponnudurai, Shinichi Sunagawa, Luis Pedro Coelho, Petra Schrotz-King, Emily Vogtmann, Nina Habermann, Emma Niméus, Andrew M. Thomas, Paolo Manghi, Sara Gandini, Davide Serrano, Sayaka Mizutani, Hirotsugu Shiroma, Satoshi Shiba, Tatsuhiro Shibata, Shinich
Opublikowane w: Nature Medicine, Numer 25/4, 2019, Strona(/y) 679-689, ISSN 1078-8956
Wydawca: Nature Publishing Group
DOI: 10.1038/s41591-019-0406-6

The short-term impact of probiotic consumption on the oral cavity microbiome

Autorzy: Erik Dassi, Pamela Ferretti, Giuseppina Covello, Roberto Bertorelli, Michela A. Denti, Veronica De Sanctis, Adrian Tett, Nicola Segata
Opublikowane w: Scientific Reports, Numer 8/1, 2018, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1038/s41598-018-28491-x

Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples

Autorzy: Sonia Tarallo, Giulio Ferrero, Gaetano Gallo, Antonio Francavilla, Giuseppe Clerico, Alberto Realis Luc, Paolo Manghi, Andrew Maltez Thomas, Paolo Vineis, Nicola Segata, Barbara Pardini, Alessio Naccarati, Francesca Cordero
Opublikowane w: mSystems, Numer 4/5, 2019, ISSN 2379-5077
Wydawca: ASM
DOI: 10.1128/msystems.00289-19

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Autorzy: Evan Bolyen, Jai Ram Rideout, Matthew R. Dillon, Nicholas A. Bokulich, Christian C. Abnet, Gabriel A. Al-Ghalith, Harriet Alexander, Eric J. Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E. Bisanz, Kyle Bittinger, Asker Brejnrod, Colin J. Brislawn, C. Titus Brown, Benjamin J. Callahan, Andrés Mauricio Caraballo-Rodríguez, John Chase, Emily K. Cope, Ricardo Da Silva, Christian D
Opublikowane w: Nature Biotechnology, Numer 37/8, 2019, Strona(/y) 852-857, ISSN 1087-0156
Wydawca: Nature Publishing Group
DOI: 10.1038/s41587-019-0209-9

Distinct Polysaccharide Utilization Profiles of Human Intestinal Prevotella copri Isolates

Autorzy: Hannah Fehlner-Peach, Cara Magnabosco, Varsha Raghavan, Jose U. Scher, Adrian Tett, Laura M. Cox, Claire Gottsegen, Aaron Watters, John D. Wiltshire-Gordon, Nicola Segata, Richard Bonneau, Dan R. Littman
Opublikowane w: Cell Host & Microbe, Numer 26/5, 2019, Strona(/y) 680-690.e5, ISSN 1931-3128
Wydawca: Cell Press
DOI: 10.1016/j.chom.2019.10.013

At the forefront of the sequencing revolution—notes from the RNGS19 conference

Autorzy: Sander Wuyts, Nicola Segata
Opublikowane w: Genome Biology, Numer 20/1, 2019, ISSN 1474-760X
Wydawca: Springer Nature
DOI: 10.1186/s13059-019-1714-3

Multiple levels of the unknown in microbiome research

Autorzy: Andrew Maltez Thomas, Nicola Segata
Opublikowane w: BMC Biology, Numer 17/1, 2019, ISSN 1741-7007
Wydawca: BioMed Central
DOI: 10.1186/s12915-019-0667-z

Microbial strain-level population structure and genetic diversity from metagenomes

Autorzy: Duy Tin Truong, Adrian Tett, Edoardo Pasolli, Curtis Huttenhower, Nicola Segata
Opublikowane w: Genome Research, Numer 27/4, 2017, Strona(/y) 626-638, ISSN 1088-9051
Wydawca: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gr.216242.116

Detecting contamination in viromes using ViromeQC

Autorzy: Moreno Zolfo, Federica Pinto, Francesco Asnicar, Paolo Manghi, Adrian Tett, Frederic D. Bushman, Nicola Segata
Opublikowane w: Nature Biotechnology, Numer 37/12, 2019, Strona(/y) 1408-1412, ISSN 1087-0156
Wydawca: Nature Publishing Group
DOI: 10.1038/s41587-019-0334-5

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0

Autorzy: Francesco Asnicar, Andrew Maltez Thomas, Francesco Beghini, Claudia Mengoni, Serena Manara, Paolo Manghi, Qiyun Zhu, Mattia Bolzan, Fabio Cumbo, Uyen May, Jon G. Sanders, Moreno Zolfo, Evguenia Kopylova, Edoardo Pasolli, Rob Knight, Siavash Mirarab, Curtis Huttenhower, Nicola Segata
Opublikowane w: Nature Communications, Numer 11/1, 2020, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-020-16366-7

Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

Autorzy: Serena Manara, Francesco Asnicar, Francesco Beghini, Davide Bazzani, Fabio Cumbo, Moreno Zolfo, Eleonora Nigro, Nicolai Karcher, Paolo Manghi, Marisa Isabell Metzger, Edoardo Pasolli, Nicola Segata
Opublikowane w: Genome Biology, Numer 20/1, 2019, ISSN 1474-760X
Wydawca: BioMed Central
DOI: 10.1186/s13059-019-1923-9

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

Autorzy: Francesco Beghini, Lauren J McIver, Aitor Blanco-Míguez, Leonard Dubois, Francesco Asnicar, Sagun Maharjan, Ana Mailyan, Paolo Manghi, Matthias Scholz, Andrew Maltez Thomas, Mireia Valles-Colomer, George Weingart, Yancong Zhang, Moreno Zolfo, Curtis Huttenhower, Eric A Franzosa, Nicola Segata
Opublikowane w: eLife, Numer 10, 2021, ISSN 2050-084X
Wydawca: eLife Sciences Publications
DOI: 10.7554/elife.65088

A unified catalog of 204,938 reference genomes from the human gut microbiome

Autorzy: Alexandre Almeida, Stephen Nayfach, Miguel Boland, Francesco Strozzi, Martin Beracochea, Zhou Jason Shi, Katherine S. Pollard, Ekaterina Sakharova, Donovan H. Parks, Philip Hugenholtz, Nicola Segata, Nikos C. Kyrpides, Robert D. Finn
Opublikowane w: Nature Biotechnology, Numer 39/1, 2021, Strona(/y) 105-114, ISSN 1087-0156
Wydawca: Nature Publishing Group
DOI: 10.1038/s41587-020-0603-3

Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma.

Autorzy: Karla A. Lee, Andrew Maltez Thomas, Laura A. Bolte, Johannes R. Björk, Laura Kist de Ruijter, Federica Armanini, Francesco Asnicar, Aitor Blanco-Miguez, Ruth Board, Neus Calbet-Llopart, Lisa Derosa, Nathalie Dhomen, Kelly Brooks, Mark Harland, Mark Harries, Emily R. Leeming, Paul Lorigan, Paolo Manghi, Richard Marais, Julia Newton-Bishop, Luigi Nezi, Federica Pinto, Miriam Potrony, Susana Puig, P
Opublikowane w: Nature Medicine, Numer 10788956, 2022, ISSN 1078-8956
Wydawca: Nature Publishing Group
DOI: 10.1038/s41591-022-01695-5

Blue poo: impact of gut transit time on the gut microbiome using a novel marker

Autorzy: Francesco Asnicar, Emily R Leeming, Eirini Dimidi, Mohsen Mazidi, Paul W Franks, Haya Al Khatib, Ana M Valdes, Richard Davies, Elco Bakker, Lucy Francis, Andrew Chan, Rachel Gibson, George Hadjigeorgiou, Jonathan Wolf, Timothy D Spector, Nicola Segata, Sarah E Berry
Opublikowane w: Gut, Numer 70/9, 2021, Strona(/y) 1665-1674, ISSN 0017-5749
Wydawca: BMJ Publishing Group
DOI: 10.1136/gutjnl-2020-323877

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