Semantic Indexing of French Biomedical Data Resources - mobility | SIFRm | Project | Results | H2020 | CORDIS

Two years later: the landscape of vocabularies and ontologies in the AgroPortal

Autores: Jonquet, Clement; Toulet, Anne; Emonet, Vincent
Publicado en: 5th International Workshop on sources and data integration in agriculture, food and environment using ontologies (IN-OVIVE @ EFITA 2017), 2017
Editor: EFITA

ICD-10 coding of death certificates with the NCBO and SIFR Annotators at CLEF eHealth 2017

Autores: Tchechmedjiev, Andon; Abdaoui, Amine; Emonet, Vincent; Jonquet, Clement
Publicado en: Working Notes of CLEF eHealth Evaluation Lab, 2017
Editor: CEUR

AgroPortal: an ontology repository for agronomy

Autores: Jonquet, Clement
Publicado en: European conference dedicated to the future use of ICT in the agri-food sector, bioresource and biomass sector, EFITA'17, demonstration session, 2017
Editor: EFITA

Enrichment of French Biomedical Ontologies with UMLS Concepts and Semantic Types for Biomedical Named Entity Recognition Though Ontological Semantic Annotation

Autores: Tchechmedjiev, Andon; Jonquet, Clement
Publicado en: Language, Ontology, Terminology and Knowledge Structures Workshop (LOKTS 2017), 2017
Editor: NA

PGxO: A very lite ontology to reconcile pharmacogenomic knowledge units

Autores: Monnin, Pierre; Jonquet, Clément; Legrand, Joël; Napoli, Amedeo; Coulet, Adrien
Publicado en: Methods, tools & platforms for Personalized Medicine in the Big Data Era (NETTAB 2017 Workshop), Edición 1, 2017
Editor: PeerJ
DOI: 10.7287/PEERJ.PREPRINTS.3140V1

French ConText: Détecter la négation, la temporalité et le sujet dans les textes cliniques Français

Autores: Abdaoui, Amine; Tchechmedjiev, Andon; Digan, William; Bringay, Sandra; Jonquet, Clement
Publicado en: 4ème Symposium sur l'Ingénierie de l'Information Médicale, SIIM'17, 2017
Editor: IRIT

Challenges for ontology repositories and applications to biomedicine & agronomy

Autores: Jonquet , Clement
Publicado en: SIMBig: Symposium on Information Management and Big Data, Edición 1, 2017
Editor: None

MuEVo, a breast cancer Consumer Health Vocabulary built out of web forums

Autores: Jonquet, Clement; Tapi-Nzali, Mike-Donald; Bringay, Sandra; TAPI NZALI, Mike Donald; Eholié, Solène
Publicado en: A. Paschke; A. Burger; A. Splendiani; M.S. Marshall; P. Romano. SWAT4LS: Semantic Web Applications and Tools for Life Sciences, 2016, Amsterdam, Netherlands. 9th International Semantic Web Applications and Tools for Life Sciences, 2016, Edición 1, 2016, Página(s) 10
Editor: none

Maitriser une technologie de gestion des ontologies et vocabulaires en France : défis et enjeux

Autores: Jonquet , Clement
Publicado en: SemWebPro Conference, Edición 1, 2018, Página(s) 2
Editor: SemWebPro

Projet VisaTM : l'interconnexion OpenMinTeD – AgroPortal – ISTEX, un exemple de service de Text et Data Mining pour les scientifiques français

Autores: Kettani , Fabienne; Schneider , Stéphane; Aubin , Sophie; Bossy , Robert; François , Claire; Jonquet , Clement; Tchechmedjiev , Andon; Toulet , Anne; Nédellec , Claire
Publicado en: 29es Journées Francophones d'Ingénierie des Connaissances, Session poster, Edición 1, 2018, Página(s) 247-249
Editor: AFIA

YAM-BIO – Results for OAEI 2017

Autores: Amina Annane, Zohra Bellahsene, Faiçal Azouaou, Clement Jonquet
Publicado en: System paper Ontology Alignment Evaluation Initiative 2017 Campaign, 2017, Página(s) 5
Editor: NA

Assessing the Practice of Ontology Metadata: A Survey Result

Autores: Anne Toulet; Biswanath Dutta; Clement Jonquet
Publicado en: Edición 1, 2018
Editor: University of Montpellier and Indian Statistical Institute
DOI: 10.5281/zenodo.3484530

NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation

Autores: Marcos Martínez-Romero, Clement Jonquet, Martin J. O’Connor, John Graybeal, Alejandro Pazos, Mark A. Musen
Publicado en: Journal of Biomedical Semantics, Edición 8/1, 2017, Página(s) Journal of Biomedical Semantics, ISSN 2041-1480
Editor: BMC
DOI: 10.1186/s13326-017-0128-y

AgroPortal: A vocabulary and ontology repository for agronomy

Autores: Clément Jonquet, Anne Toulet, Elizabeth Arnaud, Sophie Aubin, Esther Dzalé Yeumo, Vincent Emonet, John Graybeal, Marie-Angélique Laporte, Mark A. Musen, Valeria Pesce, Pierre Larmande
Publicado en: Computers and Electronics in Agriculture, Edición 144, 2018, Página(s) 126-143, ISSN 0168-1699
Editor: Elsevier BV
DOI: 10.1016/j.compag.2017.10.012

Building an effective and efficient background knowledge resource to enhance ontology matching

Autores: Amina Annane, Zohra Bellahsene, Faiçal Azouaou, Clement Jonquet
Publicado en: Journal of Web Semantics, Edición 51, 2018, Página(s) 51-68, ISSN 1570-8268
Editor: Elsevier BV
DOI: 10.1016/j.websem.2018.04.001

Enhanced functionalities for annotating and indexing clinical text with the NCBO Annotator+

Autores: Andon Tchechmedjiev, Amine Abdaoui, Vincent Emonet, Soumia Melzi, Jitendra Jonnagaddala, Clement Jonquet
Publicado en: Bioinformatics, Edición 34/11, 2018, Página(s) 1962-1965, ISSN 1367-4803
Editor: Oxford University Press
DOI: 10.1093/bioinformatics/bty009

Developing data interoperability using standards: A wheat community use case

Autores: Esther Dzale Yeumo, Michael Alaux, Elizabeth Arnaud, Sophie Aubin, Ute Baumann, Patrice Buche, Laurel Cooper, Hanna Ćwiek-Kupczyńska, Robert P. Davey, Richard Allan Fulss, Clement Jonquet, Marie-Angélique Laporte, Pierre Larmande, Cyril Pommier, Vassilis Protonotarios, Carmen Reverte, Rosemary Shrestha, Imma Subirats, Aravind Venkatesan, Alex Whan, Hadi Quesneville
Publicado en: F1000Research, Edición 6, 2017, Página(s) 1843, ISSN 2046-1402
Editor: F1000 Research Ltd.
DOI: 10.12688/f1000research.12234.1

Harnessing the Power of Unified Metadata in an Ontology Repository: The Case of AgroPortal

Autores: Clement Jonquet, Anne Toulet, Biswanath Dutta, Vincent Emonet
Publicado en: Journal on Data Semantics, 2018, Página(s) 1-31, ISSN 1861-2032
Editor: Springer
DOI: 10.1007/s13740-018-0091-5

PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison

Autores: Pierre Monnin, Joël Legrand, Graziella Husson, Patrice Ringot, Andon Tchechmedjiev, Clément Jonquet, Amedeo Napoli, Adrien Coulet
Publicado en: BMC Bioinformatics, Edición 20/S4, 2019, ISSN 1471-2105
Editor: BioMed Central
DOI: 10.1186/s12859-019-2693-9

SIFR annotator: ontology-based semantic annotation of French biomedical text and clinical notes

Autores: Andon Tchechmedjiev, Amine Abdaoui, Vincent Emonet, Stella Zevio, Clement Jonquet
Publicado en: BMC Bioinformatics, Edición 19/1, 2018, ISSN 1471-2105
Editor: BioMed Central
DOI: 10.1186/s12859-018-2429-2

New Generation Metadata Vocabulary for Ontology Description and Publication

Autores: Biswanath Dutta, Anne Toulet, Vincent Emonet, Clement Jonquet
Publicado en: Metadata and Semantic Research, Edición 755, 2017, Página(s) 173-185, ISBN 978-3-319-70862-1
Editor: Springer International Publishing
DOI: 10.1007/978-3-319-70863-8_17

Proceedings of the 2nd International Workshop on Semantics for Biodiversity, S4BioDiv'17

Autores: Algergawy, Alsayed; Karam, Naouel; Klan, Friederike; Jonquet, Clement
Publicado en: 2nd International Workshop on Semantics for Biodiversity (S4BioDiv 2017), 2017
Editor: CEUR

Semantic Indexing of French Biomedical Data Resources

Autores: Clement Jonquet
Publicado en: Project Repository Journal, Edición 3, 2019, Página(s) 16-19, ISSN 2632-4067
Editor: EDMA

Ontology Repository and Ontology-Based Services – Challenges, contributions and applications to biomedicine & agronomy

Autores: Clement Jonquet
Publicado en: University of Montpellier HDR manuscript, 2019
Editor: University of Montpellier

Semantic Indexing of French Biomedical Data Resources - mobility

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