Advanced toolbox for rapid and cost-effective functional metagenomic screening - microbiology meets microfluidics. | METAFLUIDICS | Project | Results | H2020 | CORDIS

Resultado final

Website
Visual identity package
Scientific publications or patents
Posts, press releases and news items

Publishable summary
Certifications for biosafety, GMO manipulation, animal experimentation

Certifications for biosafety, GMO manipulation, animal experimentation facilities and personnel

Quality assurance form for deliverables and exchanged materials
Documentation and instructional materials of software solution
Standards document and revisions

Publicaciones

Cecembia

Autores: Albuquerque Luciana; Rainey Fred; Egas Conceiçao; Froufe Hugo; Raposo Pedro; Da Costa, S, Milton
Publicado en: Bergey's Manual of Systematics of Archaea and Bacteria, Edición 6, 2018
Editor: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458277

Albidovulum

Autores: Albuquerque Luciana; Froufre Hugo; Conceiçao Egas; Rainy Fred; Da Costa, S
Publicado en: Whitman, WB (Ed), Bergey's Manual of Systematics of Archaea and Bacteria, Edición 9, 2018
Editor: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458176

Meiothermus

Autores: Albuquerque Luciana; Rainey Fred; Da Costa, S
Publicado en: Bergey's Manual of Systematics of Archaea and Bacteria, Edición 8, 2018
Editor: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458314

Pullulanibacillus

Autores: Albuquerque Luciana; Tiago Igor; Veríssimo António; Da Costa, S, Milton
Publicado en: Bergey's Manual of Systematics of Archaea and Bacteria, Edición 9, 2019
Editor: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458514

Hydrotalea

Autores: Albuquerque Luciana; Egas Conceição; Froufe Hugo; Da Costa, S
Publicado en: Bergey's Manual of Systematics of Archaea and Bacteria, Edición 7, 2019
Editor: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458512

Tepidicella

Autores: Albuquerque Luciana; Rainey Fred; Da Costa, S, Milton
Publicado en: Bergey's Manual of Systematics of Archaea and Bacteria, Edición 6, 2019
Editor: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458506

Salirhabdus

Autores: Albuquerque Luciana; Igor, Tiago; António, Veríssimo; Da Costa, S
Publicado en: Bergey's Manual of Systematics of Archaea and Bacteria, Edición 1, 2019
Editor: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458495

Gaiella

Autores: Albuquerque Luciana; Rainey Fred; Da Costa, S
Publicado en: Bergey's Manual of Systematics of Archaea and Bacteria, Edición 2, 2018
Editor: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458297

Aquicella

Autores: Albuquerque Luciana; Rainey, Fred; Da Costa, S
Publicado en: Bergey's Manual of Systematics of Archaea and Bacteria, Edición 13, 2018
Editor: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458275

Rubritepida

Autores: Albuquerque Luciana; Egas Conceiçao; Da Costa, S
Publicado en: Bergey's Manual of Systematics of Archaea and Bacteria, Edición 11, 2019
Editor: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458332

Truepera

Autores: Albuquerque Luciana; Rainey Fred; Da Costa, S
Publicado en: Bergey's Manual of Systematics of Archaea and Bacteria, Edición 6, 2018
Editor: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458508

Tepidamorphus

Autores: Albuquerque Luciana; Rainey Fred; Da Costa, S
Publicado en: Bergey's Manual of Systematics of Archaea and Bacteria, Edición 10, 2018
Editor: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458498

Eliorea

Autores: Da Costa, S; Albuquerque Luciana; Rainey Fred; Froufe Hugo; Roxo Inês; Raposo Pedro; Egas Conceiçao
Publicado en: Bergey's Manual of Systematics of Archaea and Bacteria, Edición 2, 2019
Editor: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458286

Herminiimonas

Autores: Albuquerque Luciana; Rainey Fred; Da Costa, S, Milton
Publicado en: Bergey's Manual of Systematics of Archaea and Bacteria, 2019
Editor: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458306

Investigating host-microbiome interactions by droplet based microfluidics

Autores: Alexandra S. Tauzin, Mariana Rangel Pereira, Liisa D. Van Vliet, Pierre-Yves Colin, Elisabeth Laville, Jeremy Esque, Sandrine Laguerre, Bernard Henrissat, Nicolas Terrapon, Vincent Lombard, Marion Leclerc, Joël Doré, Florian Hollfelder, Gabrielle Potocki-Veronese
Publicado en: Microbiome, Edición 8/1, 2020, ISSN 2049-2618
Editor: Springer Nature
DOI: 10.1186/s40168-020-00911-z

A Modular Vector Toolkit with a Tailored Set of Thermosensors To Regulate Gene Expression in Thermus thermophilus

Autores: Carlos Verdú, Esther Sanchez, Carmen Ortega, Aurelio Hidalgo, José Berenguer, Mario Mencía
Publicado en: ACS Omega, Edición 4/11, 2019, Página(s) 14626-14632, ISSN 2470-1343
Editor: American Chemical Society Publications (ACS Publications)
DOI: 10.1021/acsomega.9b02107

Investigating Host Microbiota Relationships Through Functional Metagenomics

Autores: Elisabeth Laville, Josette Perrier, Nada Bejar, Marc Maresca, Jeremy Esque, Alexandra S. Tauzin, Emna Bouhajja, Marion Leclerc, Elodie Drula, Bernard Henrissat, Stephane Berdah, Eric Di Pasquale, Patrick Robe, Gabrielle Potocki-Veronese
Publicado en: Frontiers in Microbiology, Edición 10, 2019, ISSN 1664-302X
Editor: Frontiers Media
DOI: 10.3389/fmicb.2019.01286

Complete Genome Sequence of Mycolicibacterium hassiacum DSM 44199.

Autores: Alba Blesa; Eva Sacristán-Horcajada; José Berenguer; Mercedes Sánchez
Publicado en: Microbiology Resource Anouncements, Edición 3, 2019, Página(s) e01522-18, ISSN 2576-098X
Editor: AMERICAN SOCIETY FOR MICROBIOLOGY
DOI: 10.1128/mra.01522-18

Developing robust protein analysis profiles to identify bacterial acid phosphatases in genomes and metagenomic libraries

Autores: Zulema Udaondo, Estrella Duque, Abdelali Daddaoua, Carlos Caselles, Amalia Roca, Paloma Pizarro‐Tobias, Juan L. Ramos
Publicado en: Environmental Microbiology, Edición 22/8, 2020, Página(s) 3561-3571, ISSN 1462-2912
Editor: Blackwell Publishing Inc.
DOI: 10.1111/1462-2920.15138

Novel Genes Involved in Resistance to Both Ultraviolet Radiation and Perchlorate From the Metagenomes of Hypersaline Environments

Autores: María Lamprecht-Grandío, Marta Cortesão, Salvador Mirete, Macarena Benguigui de la Cámara, Carolina G. de Figueras, Danilo Pérez-Pantoja, Joseph John White, María Eugenia Farías, Ramon Rosselló-Móra, José Eduardo González-Pastor
Publicado en: Frontiers in Microbiology, Edición 11, 2020, ISSN 1664-302X
Editor: Frontiers Media
DOI: 10.3389/fmicb.2020.00453

Harvesting of Prebiotic Fructooligosaccharides by Nonbeneficial Human Gut Bacteria

Autores: Zhi Wang, Alexandra S. Tauzin, Elisabeth Laville, Pietro Tedesco, Fabien Létisse, Nicolas Terrapon, Pascale Lepercq, Myriam Mercade, Gabrielle Potocki-Veronese
Publicado en: mSphere, Edición 5/1, 2020, ISSN 2379-5042
Editor: American Society for Microbiology
DOI: 10.1128/msphere.00771-19

Effect of design geometry, exposure energy, cytophilic molecules, cell type and load in fabrication of single-cell arrays using micro-contact printing

Autores: Swapnil Vilas Bhujbal, Maren Dekov, Vegar Ottesen, Karen Dunker, Rahmi Lale, Marit Sletmoen
Publicado en: Scientific Reports, Edición 10/1, 2020, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-020-72080-w

In Vitro Synthesis and Crystallization of β-1,4-Mannan

Autores: Florent Grimaud, Sandra Pizzut-Serin, Laurence Tarquis, Simon Ladevèze, Sandrine Morel, Jean-Luc Putaux, Gabrielle Potocki-Veronese
Publicado en: Biomacromolecules, Edición 20/2, 2018, Página(s) 846-853, ISSN 1525-7797
Editor: American Chemical Society
DOI: 10.1021/acs.biomac.8b01457

Analysis of the diversity of the glycoside hydrolase family 130 in mammal gut microbiomes reveals a novel mannoside-phosphorylase function

Autores: Ao Li, Elisabeth Laville, Laurence Tarquis, Vincent Lombard, David Ropartz, Nicolas Terrapon, Bernard Henrissat, David Guieysse, Jeremy Esque, Julien Durand, Diego P. Morgavi, Gabrielle Potocki-Veronese
Publicado en: Microbial Genomics, Edición 6/10, 2020, ISSN 2057-5858
Editor: Microbiology Society
DOI: 10.1099/mgen.0.000404

Use of photoswitchable fluorescent proteins for droplet-based microfluidic screening

Autores: Adilya Dagkesamanskaya, Krzysztof Langer, Alexandra S. Tauzin, Catherine Rouzeau, Delphine Lestrade, Gabrielle Potocki-Veronese, Laurent Boitard, Jérôme Bibette, Jean Baudry, Denis Pompon, Véronique Anton-Leberre
Publicado en: Journal of Microbiological Methods, Edición 147, 2018, Página(s) 59-65, ISSN 0167-7012
Editor: Elsevier BV
DOI: 10.1016/j.mimet.2018.03.001

Mechanisms and Regulation of Extracellular DNA Release and Its Biological Roles in Microbial Communities

Autores: Alejandra L. Ibáñez de Aldecoa, Olga Zafra, José E. González-Pastor
Publicado en: Frontiers in Microbiology, Edición 8, 2017, ISSN 1664-302X
Editor: Frontiers Media
DOI: 10.3389/fmicb.2017.01390

Role of Archaeal HerA Protein in the Biology of the Bacterium Thermus thermophilus

Autores: Alba Blesa, Nieves Quintans, Ignacio Baquedano, Carlos Mata, José Castón, José Berenguer
Publicado en: Genes, Edición 8/5, 2017, Página(s) 130, ISSN 2073-4425
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/genes8050130

Into the Thermus Mobilome: Presence, Diversity and Recent Activities of Insertion Sequences Across Thermus spp.

Autores: Alba Blesa, Mercedes Sánchez, Eva Sacristán-Horcajada, Sandra González-de la Fuente, Ramón Peiró, José Berenguer
Publicado en: Microorganisms, Edición 7/1, 2019, Página(s) 25, ISSN 2076-2607
Editor: MDPI
DOI: 10.3390/microorganisms7010025

Raineya orbicola gen. nov., sp. nov. a slightly thermophilic bacterium of the phylum Bacteroidetes and the description of Raineyaceae fam. nov.

Autores: Luciana Albuquerque, Ana Rita M. Polónia, Cristina Barroso, Hugo J. C. Froufe, Olga Lage, Alexandre Lobo-da-Cunha, Conceição Egas, Milton S. da Costa
Publicado en: International Journal of Systematic and Evolutionary Microbiology, Edición 68/4, 2018, Página(s) 982-989, ISSN 1466-5026
Editor: Society for General Microbiology
DOI: 10.1099/ijsem.0.002556

Vibrio communities in scleractinian corals differ according to health status and geographic location in the Mediterranean Sea

Autores: Esther Rubio-Portillo, Juan F. Gago, Manuel Martínez-García, Luigi Vezzulli, Ramon Rosselló-Móra, Josefa Antón, Alfonso A. Ramos-Esplá
Publicado en: Systematic and Applied Microbiology, Edición 41/2, 2018, Página(s) 131-138, ISSN 0723-2020
Editor: Elsevier BV
DOI: 10.1016/j.syapm.2017.11.007

Biogeographic Differences in the Microbiome and Pathobiome of the Coral Cladocora caespitosa in the Western Mediterranean Sea

Autores: Esther Rubio-Portillo, Diego K. Kersting, Cristina Linares, Alfonso A. Ramos-Esplá, Josefa Antón
Publicado en: Frontiers in Microbiology, Edición 9, 2018, ISSN 1664-302X
Editor: Frontiers Media
DOI: 10.3389/fmicb.2018.00022

Discovery of carbamate degrading enzymes by functional metagenomics

Autores: Lisa Ufarté, Elisabeth Laville, Sophie Duquesne, Diego Morgavi, Patrick Robe, Christophe Klopp, Angeline Rizzo, Sandra Pizzut-Serin, Gabrielle Potocki-Veronese
Publicado en: PLOS ONE, Edición 12/12, 2017, Página(s) e0189201, ISSN 1932-6203
Editor: Public Library of Science
DOI: 10.1371/journal.pone.0189201

Hierarchical Control of Nitrite Respiration by Transcription Factors Encoded within Mobile Gene Clusters of Thermus thermophilus

Autores: Laura Alvarez, Nieves G. Quintáns, Alba Blesa, Ignacio Baquedano, Mario Mencía, Carlos Bricio, José Berenguer
Publicado en: Genes, Edición 8/12, 2017, Página(s) 361, ISSN 2073-4425
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/genes8120361

Solimicrobium silvestre gen. nov., sp. nov., isolated from alpine forest soil

Autores: Rosa Margesin, Luciana Albuquerque, De-Chao Zhang, Hugo J. C. Froufe, Rita Severino, Inês Roxo, Conceição Egas, Milton S. da Costa
Publicado en: International Journal of Systematic and Evolutionary Microbiology, Edición 68/8, 2018, Página(s) 2491-2498, ISSN 1466-5026
Editor: Society for General Microbiology
DOI: 10.1099/ijsem.0.002861

Transfer of Meiothermus chliarophilus (Tenreiro et al.1995) Nobre et al. 1996, Meiothermus roseus Ming et al. 2016, Meiothermus terrae Yu et al. 2014 and Meiothermus timidus Pires et al. 2005, to Calidithermus gen. nov., as Calidithermus chliarophilus comb. nov., Calidithermus roseus comb. nov., Calidithermus terrae comb. nov. and Calidithermus timidus comb. nov., respectively, and emended descrip

Autores: Pedro Raposo, Tomeu Viver, Luciana Albuquerque, Hugo Froufe, Cristina Barroso, Conceição Egas, Ramon Rosselló-Móra, Milton S. da Costa
Publicado en: International Journal of Systematic and Evolutionary Microbiology, Edición 69/4, 2019, Página(s) 1060-1069, ISSN 1466-5026
Editor: Society for General Microbiology
DOI: 10.1099/ijsem.0.003270

High‐quality draft genome sequence of Gaiella occulta isolated from a 150 meter deep mineral water borehole and comparison with the genome sequences of other deep‐branching lineages of the phylum Actinobacteria

Autores: Rita Severino, Hugo J. C. Froufe, Cristina Barroso, Luciana Albuquerque, Alexandre Lobo‐da‐Cunha, Milton S. da Costa, Conceição Egas
Publicado en: MicrobiologyOpen, 2019, Página(s) e840, ISSN 2045-8827
Editor: John Wiley and Sons Inc.
DOI: 10.1002/mbo3.840

Are in vivo selections on the path to extinction?

Autores: Berenguer, José; Mencía, Mario; Hidalgo, Aurelio
Publicado en: Microbial Biotechnology, Edición 1, 2017, Página(s) 46-49, ISSN 1751-7915
Editor: Wiley
DOI: 10.1111/1751-7915.12490

Virulence as a Side Effect of Interspecies Interaction in Vibrio Coral Pathogens.

Autores: Josefa Antón; Andrés Mauricio Caraballo-Rodríguez; Forest Rohwer; Ana B. Martin-Cuadrado; Esther Rubio-Portillo; Esther Rubio-Portillo; Pieter C. Dorrestein
Publicado en: mBio, Edición 1, 2020, ISSN 2150-7511
Editor: American Society for Microbiology
DOI: 10.1128/mbio.00201-20

Comparative genome sequence analysis of several species in the genus Tepidimonas and the description of a novel species Tepidimonas charontis sp. nov.

Autores: Luciana Albuquerque, Nadine Castelhano, Pedro Raposo, Hugo J. C. Froufe, Igor Tiago, Rita Severino, Inês Roxo, Inês Gregório, Cristina Barroso, Conceição Egas, Milton S. da Costa
Publicado en: International Journal of Systematic and Evolutionary Microbiology, Edición 70/3, 2020, Página(s) 1596-1604, ISSN 1466-5026
Editor: Society for General Microbiology
DOI: 10.1099/ijsem.0.003942

Análisis del Pangenoma de Pseudomonas putida

Autores: Udaondo Domínguez, Zulema
Publicado en: Edición 1, 2016
Editor: Universidad de Granada

Derechos de propiedad intelectual

PLANT GROWTH PROMOTING MICROORGANISM AND ENZYMES FOR SOIL BIOGENIC CYCLES

Número de solicitud/publicación: 18 382861
Fecha: 2018-11-28
Solicitante(s): BIOILIBERIS RESEARCH AND DEVELOPMENT SL

STRAINS CAPABLE OF PRODUCING PLANT GROWTH-STIMULATING COMPOUNDS

Número de solicitud/publicación: 18 382933
Fecha: 2018-12-17
Solicitante(s): BIOILIBERIS RESEARCH AND DEVELOPMENT SL

MODULATION OF GENE EXPRESSION

Número de solicitud/publicación: 20 18058227
Fecha: 2018-03-29

Advanced toolbox for rapid and cost-effective functional metagenomic screening - microbiology meets microfluidics.

Resultado final

Publicaciones

Derechos de propiedad intelectual

Compartir esta página

Descargar