The makeup of the modern horse: a history of the biological changes introduced by human management

Publicaciones

Autores: Ludovic Orlando; Robin Allaby; Pontus Skoglund; Clio Der Sarkissian; Philipp W. Stockhammer; María C. Ávila-Arcos; Qiaomei Fu; Johannes Krause; Eske Willerslev; Anne C. Stone; Christina Warinner
Publicado en: Nature Reviews Methods Primer, Edición 1, 2021, Página(s) 14, ISSN 2662-8449
Editor: Nature
DOI: 10.1038/s43586-020-00011-0

Historical management of equine resources in France from the Iron Age to the Modern Period

Autores: Sebastien Lepetz; Benoit Clavel; Duha Alioglu; Lorelei Chauvey; Stephanie Schiavinato; Laure Tonasso-Calviere; Xuexue Liu; Antoine Fages; Naveed Khan; Andaine Seguin-Orlando; Clio Der Sarkissian; Pierre Clavel; Oscar Estrada; Charleen Gaunitz; Jean-Marc Aury; Maude Barme; Nicolas Boulbes; Alice Bourgois; Franck Decanter; Sylvain Foucras; Stephane Frere; Armelle Gardeisen; Gaëtan Jouanin; Charlo
Publicado en: Journal of Archaeological Science: Reports, Edición 40, 2021, Página(s) 103250, ISSN 2352-409X
Editor: Elsevier BV
DOI: 10.1016/j.jasrep.2021.103250

Sex in the city: Uncovering sex-specific management of equine resources from prehistoric times to the Modern Period in France

Autores: Benoit Clavel; Sebastien Lepetz; Lorelei Chauvey; Stephanie Schiavinato; Laure Tonasso-Calviere; Xuexue Liu; Antoine Fages; Naveed Khan; Andaine Seguin-Orlando; Clio Der Sarkissian; Pierre Clavel; Oscar Estrada; Duha Alioğlu; Charleen Gaunitz; Jean-Marc Aury; Maude Barme; Pierre Bodu; Monique Olive; Olivier Bignon-Lau; Jean-Christophe Castel; Myriam Boudadi-Maligne; Nicolas Boulbes; Alice Bourgoi
Publicado en: Journal of Archaeological Science: Reports, Edición 41, 2022, Página(s) 103341, ISSN 2352-409X
Editor: Elsevier BV
DOI: 10.1016/j.jasrep.2022.103341

Uncovering Signatures of DNA Methylation in Ancient Plant Remains From Patterns of Post-mortem DNA Damage

Autores: Stefanie Wagner, Christophe Plomion, Ludovic Orlando
Publicado en: Frontiers in Ecology and Evolution, Edición 8, 2020, Página(s) -, ISSN 2296-701X
Editor: Frontiers in Ecology and Evolution
DOI: 10.3389/fevo.2020.00011

Struct-f4: a Rcpp package for ancestry profile and population structure inference from f4-statistics

Autores: Pablo Librado; Ludovic Orlando
Publicado en: Bioinformatics, Edición 38, 2022, Página(s) 2070-2071, ISSN 1367-4803
Editor: Oxford University Press
DOI: 10.1093/bioinformatics/btac046

CASCADE: A Custom-Made Archiving System for the Conservation of Ancient DNA Experimental Data

Autores: Dirk Dolle; Antoine Fages; Xavier Mata; Stéphanie Schiavinato; Laure Tonasso-Calvière; Lorelei Chauvey; Stefanie Wagner; Clio Der Sarkissian; Aurore Fromentier; Andaine Seguin-Orlando; Ludovic Orlando
Publicado en: Frontiers in Ecology and Evolution, Vol 8 (2020), Edición 3, 2020, Página(s) -, ISSN 2296-701X
Editor: Frontiers in Ecology and Evolution
DOI: 10.3389/fevo.2020.00185

Ancient horse genomes reveal the timing and extent of dispersals across the Bering Land Bridge

Autores: Alisa O. Vershinina, Peter D. Heintzman, Duane G. Froese, Grant Zazula, Molly Cassatt‐Johnstone, Love Dalén, Clio Der Sarkissian, Shelby G. Dunn, Luca Ermini, Cristina Gamba, Pamela Groves, Joshua D. Kapp, Daniel H. Mann, Andaine Seguin‐Orlando, John Southon, Mathias Stiller, Matthew J. Wooller, Gennady Baryshnikov, Dmitry Gimranov, Eric Scott, Elizabeth Hall, Susan Hewitson, Irina Kirillova,
Publicado en: Molecular Ecology, Edición 20210510, 2021, Página(s) -, ISSN 0962-1083
Editor: Blackwell Publishing Inc.
DOI: 10.1111/mec.15977

The genomic history and global expansion of domestic donkeys

Autores: Evelyn T. Todd; Laure Tonasso-Calvière; Loreleï Chauvey; Stéphanie Schiavinato; Antoine Fages; Andaine Seguin-Orlando; Pierre Clavel; Naveed Khan; Lucía Pérez Pardal; Laura Patterson Rosa; Pablo Librado; Harald Ringbauer; Marta Verdugo; John Southon; Jean-Marc Aury; Aude Perdereau; Emmanuelle Vila; Matilde Marzullo; Ornella Prato; Umberto Tecchiati; Giovanna Bagnasco Gianni; Antonio Tagliacoz
Publicado en: Science, Edición 377, 2022, Página(s) 1172-1180, ISSN 0036-8075
Editor: American Association for the Advancement of Science
DOI: 10.1126/science.abo3503

Late Quaternary dynamics of Arctic biota from ancient environmental genomics

Autores: Y. L. Wang; Y. L. Wang; Mikkel Winther Pedersen; Inger Greve Alsos; Bianca De Sanctis; Fernando Racimo; Ana Prohaska; Eric Coissac; Hannah L. Owens; Marie Kristine Føreid Merkel; Antonio Fernandez-Guerra; Alexandra Rouillard; Youri Lammers; Adriana Alberti; Daniel Money; Anthony Ruter; Hugh McColl; Nicolaj K. Larsen; Anna Cherezova; Anna Cherezova; Mary E. Edwards; Mary E. Edwards; Grigory Fedoro
Publicado en: 1476-4687, Edición 600, 2021, Página(s) 86-92, ISSN 0028-0836
Editor: Nature Publishing Group
DOI: 10.17863/cam.82534

Radiocarbon and genomic evidence for the survival of Equus Sussemionus until the late Holocene

Autores: Mian Gong; Siqi Zhu; Dawei Cai; Naifan Zhang; Jia Wen; Qiyao Liang; Weilu Sun; Xinyue Shao; Yaqi Guo; Yudong Cai; Zhuqing Zheng; Wei Zhang; Songmei Hu; Xiaoyang Wang; He Tian; Youqian Li; Wei Liu; Miaomiao Yang; Jian Yang; Duo Wu; Ludovic Orlando; Yu Jiang
Publicado en: Crossref, Edición 11, 2022, Página(s) e73346, ISSN 2050-084X
Editor: eLife Sciences Publications
DOI: 10.7554/elife.73346

Assessing the predictive taxonomic power of the bony labyrinth 3D shape in horses, donkeys and their F1-hybrids

Autores: Pierre Clavel, Jean Dumoncel, Clio Der Sarkissian, Andaine Seguin-Orlando, Laure Calvière-Tonasso, Stephanie Schiavinato, Lorelei Chauvey, Aude Perdereau, Jean-Marc Aury, Patrick Wincker, Vedat Onar, Benoît Clavel, Sébastien Lepetz, José Braga, Ludovic Orlando
Publicado en: Journal of Archaeological Science, Edición 131, 2021, Página(s) 105383, ISSN 0305-4403
Editor: Academic Press
DOI: 10.1016/j.jas.2021.105383

Grey wolf genomic history reveals a dual ancestry of dogs

Autores: Anders Bergstrom; David W G Stanton; Ulrike H Taron; Laurent Frantz; Mikkel-Holger S Sinding; Erik Ersmark; Saskia Pfrengle; Molly Cassatt-Johnstone; Ophelie Lebrasseur; Linus Girdland-Flink; Daniel M Fernandes; Morgane Ollivier; Leo Speidel; Shyam Gopalakrishnan; Michael V Westbury; Jazmin Ramos-Madrigal; Tatiana R Feuerborn; Ella Reiter; Joscha Gretzinger; Susanne C Münzel;
Publicado en: Nature, Edición 607, 2022, Página(s) 313-320, ISSN 0028-0836
Editor: Nature Publishing Group
DOI: 10.1038/s41586-022-04824-9

Assessing the impact of USER-treatment on hyRAD capture applied to ancient DNA

Autores: Tomasz Suchan; Lorelei Chauvey; Marine Poullet; Laure Tonasso-Calviere; Stephanie Schiavinato; Pierre Clavel; Benoit Clavel; Sebastien Lepetz; Andaine Seguin-Orlando; Ludovic Orlando
Publicado en: Molecular Ecology Resources, Edición 22, 2022, Página(s) 2262-2274, ISSN 1755-098X
Editor: Blackwell Publishing Inc.
DOI: 10.1111/1755-0998.13619

The Evolutionary and Historical Foundation of the Modern Horse: Lessons from Ancient Genomics

Autores: Ludovic Orlando
Publicado en: Annual Review of Genetics, Edición 54/1, 2020, Página(s) 563-581, ISSN 0066-4197
Editor: Annual Reviews, Inc.
DOI: 10.1146/annurev-genet-021920-011805

Modern human incursion into Neanderthal territories 54,000 years ago at Mandrin, France

Autores: Ludovic Slimak; Clement Zanolli; Tom Higham; Marine Frouin; Jean-Luc Schwenninger; Lee J Arnold; Martina Demuro; Katerina Douka; Norbert Mercier; Gilles Guerin; Hélène Valladas; Pascale Yvorra; Yves Giraud; Andaine Seguin-Orlando; Ludovic Orlando; Jason E Lewis; Xavier Muth; Hubert Camus; Segolene Vandevelde; Mike Buckley; Carolina Mallol; Chris Stringer; Laure Metz
Publicado en: Science Advances, Edición 8, 2022, Página(s) eabj9496, ISSN 2375-2548
Editor: American Association for the Advancement of Science
DOI: 10.1126/sciadv.abj9496

Late Quaternary dynamics of Arctic biota from ancient environmental genomics

Autores: Yucheng Wang, Mikkel Winther Pedersen, Inger Greve Alsos, Bianca De Sanctis, Fernando Racimo, Ana Prohaska, Eric Coissac, Hannah Lois Owens, Marie Kristine Føreid Merkel, Antonio Fernandez-Guerra, Alexandra Rouillard, Youri Lammers, Adriana Alberti, France Denoeud, Daniel Money, Anthony H. Ruter, Hugh McColl, Nicolaj Krog Larsen, Anna A. Cherezova, Mary E. Edwards, Grigory B. Fedorov, James Haile
Publicado en: Nature, Edición 20211020, 2021, Página(s) -, ISSN 0028-0836
Editor: Nature Publishing Group
DOI: 10.1038/s41586-021-04016-x

Zonkey: A simple, accurate and sensitive pipeline to genetically identify equine F1-hybrids in archaeological assemblages

Autores: Mikkel Schubert, Marjan Mashkour, Charleen Gaunitz, Antoine Fages, Andaine Seguin-Orlando, Shiva Sheikhi, Ahmed H. Alfarhan, Saleh A. Alquraishi, Khaled A.S. Al-Rasheid, Richard Chuang, Luca Ermini, Cristina Gamba, Jaco Weinstock, Onar Vedat, Ludovic Orlando
Publicado en: Journal of Archaeological Science, Edición 78, 2017, Página(s) 147-157, ISSN 0305-4403
Editor: Academic Press
DOI: 10.1016/j.jas.2016.12.005

Evaluating the impact of domestication and captivity on the horse gut microbiome

Autores: Jessica L. Metcalf, Se Jin Song, James T. Morton, Sophie Weiss, Andaine Seguin-Orlando, Frédéric Joly, Claudia Feh, Pierre Taberlet, Eric Coissac, Amnon Amir, Eske Willerslev, Rob Knight, Valerie McKenzie, Ludovic Orlando
Publicado en: Scientific Reports, Edición 7/1, 2017, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-017-15375-9

Developing a 670k genotyping array to tag ~2M SNPs across 24 horse breeds

Autores: Robert J. Schaefer, Mikkel Schubert, Ernest Bailey, Danika L. Bannasch, Eric Barrey, Gila Kahila Bar-Gal, Gottfried Brem, Samantha A. Brooks, Ottmar Distl, Ruedi Fries, Carrie J. Finno, Vinzenz Gerber, Bianca Haase, Vidhya Jagannathan, Ted Kalbfleisch, Tosso Leeb, Gabriella Lindgren, Maria Susana Lopes, Núria Mach, Artur da Câmara Machado, James N. MacLeod, Annette McCoy, Julia Metzger, Cecilia
Publicado en: BMC Genomics, Edición 18/1, 2017, ISSN 1471-2164
Editor: BioMed Central
DOI: 10.1186/s12864-017-3943-8

A new genus of horse from Pleistocene North America

Autores: Peter D Heintzman, Grant D Zazula, Ross DE MacPhee, Eric Scott, James A Cahill, Brianna K McHorse, Joshua D Kapp, Mathias Stiller, Matthew J Wooller, Ludovic Orlando, John Southon, Duane G Froese, Beth Shapiro
Publicado en: eLife, Edición 6, 2017, ISSN 2050-084X
Editor: eLife Sciences Publications
DOI: 10.7554/eLife.29944

Detecting Signatures of Positive Selection along Defined Branches of a Population Tree Using LSD

Autores: Pablo Librado, Ludovic Orlando
Publicado en: Molecular Biology and Evolution, Edición 35/6, 2018, Página(s) 1520-1535, ISSN 0737-4038
Editor: Oxford University Press
DOI: 10.1093/molbev/msy053

Late Quaternary horses in Eurasia in the face of climate and vegetation change

Autores: Michela Leonardi, Francesco Boschin, Konstantinos Giampoudakis, Robert M. Beyer, Mario Krapp, Robin Bendrey, Robert Sommer, Paolo Boscato, Andrea Manica, David Nogues-Bravo, Ludovic Orlando
Publicado en: Science Advances, Edición 4/7, 2018, Página(s) eaar5589, ISSN 2375-2548
Editor: Science Advances
DOI: 10.1126/sciadv.aar5589

Ancient genomic changes associated with domestication of the horse

Autores: Pablo Librado, Cristina Gamba, Charleen Gaunitz, Clio Der Sarkissian, Mélanie Pruvost, Anders Albrechtsen, Antoine Fages, Naveed Khan, Mikkel Schubert, Vidhya Jagannathan, Aitor Serres-Armero, Lukas F. K. Kuderna, Inna S. Povolotskaya, Andaine Seguin-Orlando, Sébastien Lepetz, Markus Neuditschko, Catherine Thèves, Saleh Alquraishi, Ahmed H. Alfarhan, Khaled Al-Rasheid, Stefan Rieder, Zainolla S
Publicado en: Science, Edición 356/6336, 2017, Página(s) 442-445, ISSN 0036-8075
Editor: American Association for the Advancement of Science
DOI: 10.1126/science.aam5298

Detecting taxonomic and phylogenetic signals in equid cheek teeth: towards new palaeontological and archaeological proxies

Autores: T. Cucchi, A. Mohaseb, S. Peigné, K. Debue, L. Orlando, M. Mashkour
Publicado en: Royal Society Open Science, Edición 4/4, 2017, Página(s) 160997, ISSN 2054-5703
Editor: Royal Society Open Science
DOI: 10.1098/rsos.160997

Improved de novo genomic assembly for the domestic donkey

Autores: Gabriel Renaud, Bent Petersen, Andaine Seguin-Orlando, Mads Frost Bertelsen, Andrew Waller, Richard Newton, Romain Paillot, Neil Bryant, Mark Vaudin, Pablo Librado, Ludovic Orlando
Publicado en: Science Advances, Edición 4/4, 2018, Página(s) eaaq0392, ISSN 2375-2548
Editor: Science Advances (American Association for the Advancement of Science)
DOI: 10.1126/sciadv.aaq0392

Horse Y chromosome assembly displays unique evolutionary features and putative stallion fertility genes

Autores: Jan E. Janečka, Brian W. Davis, Sharmila Ghosh, Nandina Paria, Pranab J. Das, Ludovic Orlando, Mikkel Schubert, Martin K. Nielsen, Tom A. E. Stout, Wesley Brashear, Gang Li, Charles D. Johnson, Richard P. Metz, Al Muatasim Al Zadjali, Charles C. Love, Dickson D. Varner, Daniel W. Bellott, William J. Murphy, Bhanu P. Chowdhary, Terje Raudsepp
Publicado en: Nature Communications, Edición 9/1, 2018, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-018-05290-6

Improved reference genome for the domestic horse increases assembly contiguity and composition

Autores: Theodore S. Kalbfleisch, Edward S. Rice, Michael S. DePriest, Brian P. Walenz, Matthew S. Hestand, Joris R. Vermeesch, Brendan L. O′Connell, Ian T. Fiddes, Alisa O. Vershinina, Nedda F. Saremi, Jessica L. Petersen, Carrie J. Finno, Rebecca R. Bellone, Molly E. McCue, Samantha A. Brooks, Ernest Bailey, Ludovic Orlando, Richard E. Green, Donald C. Miller, Douglas F. Antczak, James N. MacLeod
Publicado en: Communications Biology, Edición 1/1, 2018, ISSN 2399-3642
Editor: Communications Biology
DOI: 10.1038/s42003-018-0199-z

Early pastoral economies along the Ancient Silk Road: Biomolecular evidence from the Alay Valley, Kyrgyzstan

Autores: William Taylor, Svetlana Shnaider, Aida Abdykanova, Antoine Fages, Frido Welker, Franziska Irmer, Andaine Seguin-Orlando, Naveed Khan, Katerina Douka, Ksenia Kolobova, Ludovic Orlando, Andrei Krivoshapkin, Nicole Boivin
Publicado en: PLOS ONE, Edición 13/10, 2018, Página(s) e0205646, ISSN 1932-6203
Editor: Public Library of Science
DOI: 10.1371/journal.pone.0205646

Late Bronze Age cultural origins of dairy pastoralism in Mongolia

Autores: Ludovic Orlando
Publicado en: Proceedings of the National Academy of Sciences, Edición 115/48, 2018, Página(s) 12083-12085, ISSN 0027-8424
Editor: National Academy of Sciences
DOI: 10.1073/pnas.1817559115

Sexing Viking Age horses from burial and non-burial sites in Iceland using ancient DNA

Autores: Heidi M. Nistelberger, Albína Hulda Pálsdóttir, Bastiaan Star, Rúnar Leifsson, Agata T. Gondek, Ludovic Orlando, James H. Barrett, Jón Hallsteinn Hallsson, Sanne Boessenkool
Publicado en: Journal of Archaeological Science, Edición 101, 2019, Página(s) 115-122, ISSN 0305-4403
Editor: Academic Press
DOI: 10.1016/j.jas.2018.11.007

The first horse herders and the impact of early Bronze Age steppe expansions into Asia

Autores: Peter de Barros Damgaard, Rui Martiniano, Jack Kamm, J. Víctor Moreno-Mayar, Guus Kroonen, Michaël Peyrot, Gojko Barjamovic, Simon Rasmussen, Claus Zacho, Nurbol Baimukhanov, Victor Zaibert, Victor Merz, Arjun Biddanda, Ilja Merz, Valeriy Loman, Valeriy Evdokimov, Emma Usmanova, Brian Hemphill, Andaine Seguin-Orlando, Fulya Eylem Yediay, Inam Ullah, Karl-Göran Sjögren, Katrine Højholt Iversen
Publicado en: Science, Edición 360/6396, 2018, Página(s) eaar7711, ISSN 0036-8075
Editor: American Association for the Advancement of Science
DOI: 10.1126/science.aar7711

Decline of genetic diversity in ancient domestic stallions in Europe

Autores: Saskia Wutke, Edson Sandoval-Castellanos, Norbert Benecke, Hans-Jürgen Döhle, Susanne Friederich, Javier Gonzalez, Michael Hofreiter, Lembi Lõugas, Ola Magnell, Anna-Sapfo Malaspinas, Arturo Morales-Muñiz, Ludovic Orlando, Monika Reissmann, Alexandra Trinks, Arne Ludwig
Publicado en: Science Advances, Edición 4/4, 2018, Página(s) eaap9691, ISSN 2375-2548
Editor: Science Advances
DOI: 10.1126/sciadv.aap9691

Spotted phenotypes in horses lost attractiveness in the Middle Ages

Autores: Saskia Wutke, Norbert Benecke, Edson Sandoval-Castellanos, Hans-Jürgen Döhle, Susanne Friederich, Javier Gonzalez, Jón Hallsteinn Hallsson, Michael Hofreiter, Lembi Lõugas, Ola Magnell, Arturo Morales-Muniz, Ludovic Orlando, Albína Hulda Pálsdóttir, Monika Reissmann, Matej Ruttkay, Alexandra Trinks, Arne Ludwig
Publicado en: Scientific Reports, Edición 6/1, 2016, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/srep38548

Evolutionary Patterns and Processes: Lessons from Ancient DNA

Autores: Michela Leonardi, Pablo Librado, Clio Der Sarkissian, Mikkel Schubert, Ahmed H. Alfarhan, Saleh A. Alquraishi, Khaled A. S. Al-Rasheid, Cristina Gamba, Eske Willerslev, Ludovic Orlando
Publicado en: Systematic Biology, 2017, Página(s) syw059, ISSN 1063-5157
Editor: Taylor & Francis
DOI: 10.1093/sysbio/syw059

A Robust Framework for Microbial Archaeology

Autores: Christina Warinner, Alexander Herbig, Allison Mann, James A. Fellows Yates, Clemens L. Weiß, Hernán A. Burbano, Ludovic Orlando, Johannes Krause
Publicado en: Annual Review of Genomics and Human Genetics, Edición 18/1, 2017, Página(s) 321-356, ISSN 1527-8204
Editor: Annual Reviews, Inc.
DOI: 10.1146/annurev-genom-091416-035526

The Effects of Captivity on the Mammalian Gut Microbiome

Autores: Valerie J. McKenzie, Se Jin Song, Frédéric Delsuc, Tiffany L. Prest, Angela M. Oliverio, Timothy M. Korpita, Alexandra Alexiev, Katherine R. Amato, Jessica L. Metcalf, Martin Kowalewski, Nico L. Avenant, Andres Link, Anthony Di Fiore, Andaine Seguin-Orlando, Claudia Feh, Ludovic Orlando, Joseph R. Mendelson, Jon Sanders, Rob Knight
Publicado en: Integrative and Comparative Biology, Edición 57/4, 2017, Página(s) 690-704, ISSN 1540-7063
Editor: Oxford University Press
DOI: 10.1093/icb/icx090

Ancient genomes revisit the ancestry of domestic and Przewalski’s horses

Autores: Charleen Gaunitz, Antoine Fages, Kristian Hanghøj, Anders Albrechtsen, Naveed Khan, Mikkel Schubert, Andaine Seguin-Orlando, Ivy J. Owens, Sabine Felkel, Olivier Bignon-Lau, Peter de Barros Damgaard, Alissa Mittnik, Azadeh F. Mohaseb, Hossein Davoudi, Saleh Alquraishi, Ahmed H. Alfarhan, Khaled A. S. Al-Rasheid, Eric Crubézy, Norbert Benecke, Sandra Olsen, Dorcas Brown, David Anthony, Ken Massy,
Publicado en: Science, Edición 360/6384, 2018, Página(s) 111-114, ISSN 0036-8075
Editor: American Association for the Advancement of Science
DOI: 10.1126/science.aao3297

Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series

Autores: Antoine Fages, Kristian Hanghøj, Naveed Khan, Charleen Gaunitz, Andaine Seguin-Orlando, Michela Leonardi, Christian McCrory Constantz, Cristina Gamba, Khaled A.S. Al-Rasheid, Silvia Albizuri, Ahmed H. Alfarhan, Morten Allentoft, Saleh Alquraishi, David Anthony, Nurbol Baimukhanov, James H. Barrett, Jamsranjav Bayarsaikhan, Norbert Benecke, Eloísa Bernáldez-Sánchez, Luis Berrocal-Rangel, Fereid
Publicado en: Cell, Edición 177/6, 2019, Página(s) 1419-1435.e31, ISSN 0092-8674
Editor: Cell Press
DOI: 10.1016/j.cell.2019.03.049

Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples

Autores: Gabriel Renaud, Kristian Hanghøj, Thorfinn Sand Korneliussen, Eske Willerslev, Ludovic Orlando
Publicado en: Genetics, 2019, Página(s) genetics.302057.2019, ISSN 0016-6731
Editor: Genetics Society of America
DOI: 10.1534/genetics.119.302057

DamMet: ancient methylome mapping accounting for errors, true variants, and post-mortem DNA damage

Autores: Kristian Hanghøj, Gabriel Renaud, Anders Albrechtsen, Ludovic Orlando
Publicado en: GigaScience, Edición 8/4, 2019, ISSN 2047-217X
Editor: OUP
DOI: 10.1093/gigascience/giz025

DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions

Autores: Lucie Zinger, Aurélie Bonin, Inger G. Alsos, Miklós Bálint, Holly Bik, Frédéric Boyer, Anthony A. Chariton, Simon Creer, Eric Coissac, Bruce E. Deagle, Marta De Barba, Ian A. Dickie, Alex J. Dumbrell, Gentile Francesco Ficetola, Noah Fierer, Luca Fumagalli, M. Thomas P. Gilbert, Simon Jarman, Ari Jumpponen, Håvard Kauserud, Ludovic Orlando, Johan Pansu, Jan Pawlowski, Leho Tedersoo, Philip F
Publicado en: Molecular Ecology, Edición 28/8, 2019, Página(s) 1857-1862, ISSN 0962-1083
Editor: Blackwell Publishing Inc.
DOI: 10.1111/mec.15060

EPAS1 gain-of-function mutation contributes to high-altitude adaptation in Tibetan horses

Autores: Xuexue Liu, Yanli Zhang, Yefang Li, Jianfei Pan, Dandan Wang, Weihuang Chen, Zhuqing Zheng, Xiaohong He, Qianjun Zhao, Yabin Pu, Weijun Guan, Jianlin Han, Ludovic Orlando, Yuehui Ma, Lin Jiang
Publicado en: Molecular Biology and Evolution, 2019, ISSN 0737-4038
Editor: Oxford University Press
DOI: 10.1093/molbev/msz158

Origin and Evolution of Deleterious Mutations in Horses

Autores: Ludovic Orlando, Pablo Librado
Publicado en: Genes, Edición 10/9, 2019, Página(s) 649, ISSN 2073-4425
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/genes10090649

Dairy pastoralism sustained eastern Eurasian steppe populations for 5,000 years

Autores: Shevan Wilkin, Alicia Ventresca Miller, William T. T. Taylor, Bryan K. Miller, Richard W. Hagan, Madeleine Bleasdale, Ashley Scott, Sumiya Gankhuyg, Abigail Ramsøe, S. Uliziibayar, Christian Trachsel, Paolo Nanni, Jonas Grossmann, Ludovic Orlando, Mark Horton, Philipp W. Stockhammer, Erdene Myagmar, Nicole Boivin, Christina Warinner, Jessica Hendy
Publicado en: Nature Ecology & Evolution, Edición 4/3, 2020, Página(s) 346-355, ISSN 2397-334X
Editor: Springer Nature
DOI: 10.1038/s41559-020-1120-y

Ancient Genomes Reveal Unexpected Horse Domestication and Management Dynamics

Autores: Ludovic Orlando
Publicado en: BioEssays, Edición 42/1, 2019, Página(s) 1900164, ISSN 0265-9247
Editor: John Wiley & Sons Inc.
DOI: 10.1002/bies.201900164

Animal domestication in the era of ancient genomics

Autores: Laurent A. F. Frantz, Daniel G. Bradley, Greger Larson, Ludovic Orlando
Publicado en: Nature Reviews Genetics, 2020, ISSN 1471-0056
Editor: Nature Publishing Group
DOI: 10.1038/s41576-020-0225-0

Paleogenomics: reconstruction of plant evolutionary trajectories from modern and ancient DNA

Autores: Caroline Pont, Stefanie Wagner, Antoine Kremer, Ludovic Orlando, Christophe Plomion, Jerome Salse
Publicado en: Genome Biology, Edición 20/1, 2019, Página(s) 29, ISSN 1474-760X
Editor: BMC
DOI: 10.1186/s13059-019-1627-1

Filling Important Gaps in the Genomic History of Southwest Asia

Autores: Ludovic Orlando
Publicado en: Cell, Edición 181, ISSUE5, MAY 28 2020, 2020, Página(s) 966-968, ISSN 1097-4172
Editor: US Cell Press
DOI: 10.1016/j.cell.2020.05.010

Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny

Autores: Enrico Cappellini, Frido Welker, Luca Pandolfi, Jazmín Ramos-Madrigal, Diana Samodova, Patrick L. Rüther, Anna K. Fotakis, David Lyon, J. Víctor Moreno-Mayar, Maia Bukhsianidze, Rosa Rakownikow Jersie-Christensen, Meaghan Mackie, Aurélien Ginolhac, Reid Ferring, Martha Tappen, Eleftheria Palkopoulou, Marc R. Dickinson, Thomas W. Stafford, Yvonne L. Chan, Anders Götherström, Senthilvel K. S.
Publicado en: Nature, Edición 574/7776, 2019, Página(s) 103-107, ISSN 0028-0836
Editor: Nature Publishing Group
DOI: 10.1038/s41586-019-1555-y

Horse males became over-represented in archaeological assemblages during the Bronze Age

Autores: Antoine Fages, Andaine Seguin-Orlando, Mietje Germonpré, Ludovic Orlando
Publicado en: Journal of Archaeological Science: Reports, Edición 31, 2020, Página(s) 102364, ISSN 2352-409X
Editor: Elsevier BV
DOI: 10.1016/j.jasrep.2020.102364

The origins and spread of domestic horses from the Western Eurasian steppes

Autores: Pablo Librado, Naveed Khan, Antoine Fages, Mariya A. Kusliy, Tomasz Suchan, Laure Tonasso-Calvière, Stéphanie Schiavinato, Duha Alioglu, Aurore Fromentier, Aude Perdereau, Jean-Marc Aury, Charleen Gaunitz, Lorelei Chauvey, Andaine Seguin-Orlando, Clio Der Sarkissian, John Southon, Beth Shapiro, Alexey A. Tishkin, Alexey A. Kovalev, Saleh Alquraishi, Ahmed H. Alfarhan, Khaled A. S. Al-Rasheid, Ti
Publicado en: Nature, Edición 598/7882, 2021, Página(s) 634-640, ISSN 0028-0836
Editor: Nature Publishing Group
DOI: 10.1038/s41586-021-04018-9

A single-nucleotide mutation within the TBX3 enhancer increased body size in Chinese horses

Autores: Xuexue Liu; Yanli Zhang; Wujun Liu; Yefang Li; Jianfei Pan; Yabin Pu; Jianlin Han; Ludovic Orlando; Yuehui Ma; Lin Jiang
Publicado en: Current Biology, Edición 32, 2022, Página(s) 480-487.e6, ISSN 0960-9822
Editor: Cell Press
DOI: 10.1016/j.cub.2021.11.052

Using paleo-archives to safeguard biodiversity under climate change

Autores: Damien A. Fordham, Stephen T. Jackson, Stuart C. Brown, Brian Huntley, Barry W. Brook, Dorthe Dahl-Jensen, M. Thomas P. Gilbert, Bette L. Otto-Bliesner, Anders Svensson, Spyros Theodoridis, Janet M. Wilmshurst, Jessie C. Buettel, Elisabetta Canteri, Matthew McDowell, Ludovic Orlando, Julia Pilowsky, Carsten Rahbek, David Nogues-Bravo
Publicado en: Science, Edición 369/6507, 2020, Página(s) -, ISSN 0036-8075
Editor: American Association for the Advancement of Science
DOI: 10.1126/science.abc5654

Author Correction: Improved reference genome for the domestic horse increases assembly contiguity and composition

Autores: Theodore S. Kalbfleisch, Edward S. Rice, Michael S. DePriest, Brian P. Walenz, Matthew S. Hestand, Joris R. Vermeesch, Brendan L. O’Connell, Ian T. Fiddes, Alisa O. Vershinina, Nedda F. Saremi, Jessica L. Petersen, Carrie J. Finno, Rebecca R. Bellone, Molly E. McCue, Samantha A. Brooks, Ernest Bailey, Ludovic Orlando, Richard E. Green, Donald C. Miller, Douglas F. Antczak, James N. MacLeod
Publicado en: Communications Biology, Edición 2/1, 2019, Página(s) -, ISSN 2399-3642
Editor: Commun Biol
DOI: 10.1038/s42003-019-0591-3

High-Throughput DNA sequencing of ancient wood

Autores: Stefanie Wagner, Frédéric Lagane, Andaine Seguin-Orlando, Mikkel Schubert, Thibault Leroy, Erwan Guichoux, Emilie Chancerel, Inger Bech-Hebelstrup, Vincent Bernard, Cyrille Billard, Yves Billaud, Matthias Bolliger, Christophe Croutsch, Katarina Čufar, Frédérique Eynaud, Karl Uwe Heussner, Joachim Köninger, Fabien Langenegger, Frédéric Leroy, Christine Lima, Nicoletta Martinelli, Garry Momb
Publicado en: Molecular Ecology, Edición 27/5, 2018, Página(s) 1138-1154, ISSN 0962-1083
Editor: Blackwell Publishing Inc.
DOI: 10.1111/mec.14514

mapDATAge: a ShinyR package to chart ancient DNA data through space and time

Autores: Xuexue Liu; Ludovic Orlando
Publicado en: Bioinformatics, Edición 38, 2022, Página(s) 3992-3994, ISSN 1367-4803
Editor: Oxford University Press
DOI: 10.1093/bioinformatics/btac425

Performance and automation of ancient DNA capture with RNA hyRAD probes

Autores: Tomasz Suchan; Mariya A. Kusliy; Naveed Khan; Naveed Khan; Lorelei Chauvey; Laure Tonasso-Calvière; Stéphanie Schiavinato; John Southon; Marcel Keller; Keiko Kitagawa; Johannes Krause; Alexander Bessudnov; Alexander A. Bessudnov; Alexander S. Graphodatsky; Silvia Valenzuela-Lamas; Jarosław Wilczyński; Sylwia Pospuła; Krzysztof Tunia; Marek Nowak; Magdalena Moskal-del-Hoyo; Alexey A. Tishkin;
Publicado en: ISSN: 1755-098X, Edición 22, 2022, Página(s) 891-907, ISSN 1755-098X
Editor: Blackwell Publishing Inc.
DOI: 10.1111/1755-0998.13518

Authentication and Assessment of Contamination in Ancient DNA

Autores: Gabriel Renaud, Mikkel Schubert, Susanna Sawyer, Ludovic Orlando
Publicado en: Ancient DNA - Methods and Protocols, Edición 1963, 2019, Página(s) 163-194, ISBN 978-1-4939-9175-4
Editor: Springer New York
DOI: 10.1007/978-1-4939-9176-1_17

Ancient Epigenomics

Autores: Kristian Hanghøj, Ludovic Orlando
Publicado en: Paleogenomics Genome-Scale Analysis of Ancient DNA, 2019, ISBN 978-3-030-04753-5
Editor: Springer

L’ADN ancien comme nouvelle source historique

Autores: Ludovic Orlando
Publicado en: Aux sources de l'histoire animale, 2019, ISSN 0292-6679
Editor: Éditions de la Sorbonne

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