Deliverables
D2.1 Matrix-dependent sample handling protocols for human, animal, wildlife/vectors and food samples (M12)
Paper on methodology and results of estimating the value of safetyD14.3 A scientific paper describing the methodology and results of estimating the value of safety, with the results from several European countries (Month 45);
Report on NGS based diagnostics in comparison to gold standard methodsD6.1 Report on NGS based diagnostics in comparison to gold standard methods (month 42)
Standardized protocolsD3.3 Standardized protocols for detection of clusters of healthcare associated infections (M42)
Risk based surveillance plans, sampling algorithms and protocolsD1.2 Risk based surveillance plans, sampling algorithms and protocols for surveillance of emerging and foodborne diseases and pathogens not covered by existing surveillance (M40)
Publications and presentationsD13.6 COMPARE acknowledged publications and presentations (month 60).
Algorithm for detection of informative (sub)typesD4.2 Algorithm for detection of informative (sub)types for epidemiological analysis and RA for the main foodborne pathogens (M32)
Cost-effectiveness reportD14.5 A report on the assessment of options for refining selected elements of COMPARE in view of improving the overall cost-effectiveness of the system, with recommendations (Month 60)
Case study cost-effectiveness reportD14.4 Report on the (potential) cost-effectiveness of COMPARE, based on the case studies (scenario/pilot/retrospective studies). Each case study presented will include a section on elements related to the system and on the wider framework (Month 54);
Workshop programmeD13.5 COMPARE workshop programme (10 planned, continuously updated) (month 12);
Prediction algorithm AMR markersD3.2 Prediction algorithm for antimicrobial resistance markers in sequence data (M24)
Sequencing workflowD2.3 Sequencing workflow including relevant NGS platforms (M36)
Full technical specificationsD9.5 Full technical specifications and publication submission (Month 60)
Methodologies reportD14.2 State-of-the-art methodologies for the measurement and valuation of the elements specified in the framework. This will include a section on the system itself and on the wider framework (Month 30);
Standard protocol sample processingD2.2 Standard protocol for sample processing (M24)
D14.1 Framework for assessing cost-effectiveness of COMPARE in which key costs and benefits are highlighted. This will include a section on the system itself and on the wider framework (Month 18);
Initial version COMPARE RCT box V1D10.3: Initial version COMPARE Risk Communication Tool box V1 (crct box V1) – Month 36
Integrated analytical workflowsD9.4 Integrated analytical workflows from WPs 2, 3, 4 and 5 (Month 48)
Phylogenetic and phylogeographic toolsD5.3 Phylogenetic and phylogeographic tools for epidemiological investigations and rapid risk assessment (M30)
Analytical workflow for clinical diagnostic applicationD3.1 Analytical workflow for clinical diagnostic application (M18)
Automated tools for rapid assessment of key transmission parametersD1.1 Automated tools for rapid assessment of key transmission parameters and rates of spread estimates (M24)
Analytical workflowD4.3 Analytical workflow for epidemiological handling of and response to food-borne outbreaks in Europe (M48)
Generic RA frameworkD1.3 Generic risk assessment framework to target surveillance activities and outbreak investigations (M46)
Methods for prediction of pathogen phenotype from genotype)D5.5 Methods for prediction of pathogen phenotype from genotype data and structure models (M42)
Beta version COMPARE RCT box V2D10.4: Beta version COMPARE Risk Communication Tool box V2 integrated and interoperable with the COMPARE platform (crct box V2) – Month 48
Integration with map / tree / network visualisation components to the COMPARE data portalThis deliverable relates to WP9 task 4, and represents the utility of the existing MicroReact map/tree/phylogeny interface, as appropriate, for use within the COMPARE data portal. The work will involve the linking of MicroReact, to the output of db searching within the COMPARE data portal and the extension of APIs to allow the tools to be ‘launched’ in remote servers (eg VMs within the cloud infrastructure) if appropriate.
Tools for rapid sequence based detection of strain specific clustersD5.2 Tools for rapid sequence based detection of strain specific clusters in time, place and host for the main emerging pathogen classes (M30)
Tools for detecting SNPsD5.4 Tools for detecting single nucleotide polymorphisms and analyses within and between hosts (M36)
Validated RA model for NGS dataD4.4 Validated SA model for NGS data (M48)
Generic workflow engineD9.3 Generic workflow engine supporting assembly and functional annotation workflows (Month 36)
Data analysis pipelineD2.4 Evaluated and documented data analysis pipeline (M24 and onwards)
D13.4 e-learning materials (continuously updated) (month 12);
Public websiteD13.3 COMPARE public website (month 3);
Leaflet and templatesD13.2 Leaflet and templates for promotional material in COMPARE corporate style (month 3);
Publications
Author(s):
Elitsa Panayotova, Anna Papa, Iva Trifonova, Iva Christova
Published in:
Ticks and Tick-borne Diseases, 2016, ISSN 1877-959X
Publisher:
Elsevier BV
DOI:
10.1016/j.ttbdis.2016.05.010
Author(s):
Takayuki Miura, Sébastien Lhomme, Jean-Claude Le Saux, Philippe Le Mehaute, Yvonnick Guillois, Elizabeth Couturier, Jacques Izopet, Florence Abranavel, Françoise S. Le Guyader
Published in:
Food and Environmental Virology, 2016, ISSN 1867-0334
Publisher:
Springer Verlag
DOI:
10.1007/s12560-016-9241-9
Author(s):
Miranda de Graaf, Janko van Beek, Marion P. G. Koopmans
Published in:
Nature Reviews Microbiology, Issue 14/7, 2016, Page(s) 421-433, ISSN 1740-1526
Publisher:
Nature Publishing Group
DOI:
10.1038/nrmicro.2016.48
Author(s):
M de Graaf, J van Beek, H Vennema, A Podkolzin, J Hewitt, F Bucardo, K Templeton, J Mans, J Nordgren, G Reuter, M Lynch, L Rasmussen, N Iritani, M Chan, V Martella, K Ambert-Balay, J Vinjé, P White, M Koopmans
Published in:
Eurosurveillance, Issue 20/26, 2015, Page(s) 21178, ISSN 1560-7917
Publisher:
European Centre for Disease Prevention and Control (ECDC)
DOI:
10.2807/1560-7917.ES2015.20.26.21178
Author(s):
B. B. Xavier, C. Lammens, P. Butaye, H. Goossens, S. Malhotra-Kumar
Published in:
Journal of Antimicrobial Chemotherapy, 2016, Page(s) dkw191, ISSN 0305-7453
Publisher:
Oxford University Press
DOI:
10.1093/jac/dkw191
Author(s):
B. A. D. van Bunnik, M. E. J. Woolhouse
Published in:
Royal Society Open Science, Issue 4/4, 2017, Page(s) 161067, ISSN 2054-5703
Publisher:
Royal Society Open Science
DOI:
10.1098/rsos.161067
Author(s):
Laury Baillon, Emilie Mérour, Joëlle Cabon, Lénaïg Louboutin, Hélène Quenault, Fabrice Touzain, Thierry Morin, Yannick Blanchard, Stéphane Biacchesi, Michel Brémont
Published in:
Journal of General Virology, Issue 98/6, 2017, Page(s) 1181-1184, ISSN 0022-1317
Publisher:
Society for General Microbiology
DOI:
10.1099/jgv.0.000830
Author(s):
Gytis Dudas, Luiz Max Carvalho, Trevor Bedford, Andrew J. Tatem, Guy Baele, Nuno R. Faria, Daniel J. Park, Jason T. Ladner, Armando Arias, Danny Asogun, Filip Bielejec, Sarah L. Caddy, Matthew Cotten, Jonathan D’Ambrozio, Simon Dellicour, Antonino Di Caro, Joseph W. Diclaro, Sophie Duraffour, Michael J. Elmore, Lawrence S. Fakoli, Ousmane Faye, Merle L. Gilbert, Sahr M. Gevao, Stephen Gire, Adri
Published in:
Nature, Issue 544/7650, 2017, Page(s) 309-315, ISSN 0028-0836
Publisher:
Nature Publishing Group
DOI:
10.1038/nature22040
Author(s):
Bianca Dößelmann, Matthias Willmann, Matthias Steglich, Boyke Bunk, Ulrich Nübel, Silke Peter, Richard A. Neher
Published in:
Antimicrobial Agents and Chemotherapy, Issue 61/9, 2017, Page(s) e00043-17, ISSN 0066-4804
Publisher:
American Society for Microbiology
DOI:
10.1128/AAC.00043-17
Author(s):
Dennis Hanke, Anne Pohlmann, Carola Sauter-Louis, Dirk Höper, Julia Stadler, Mathias Ritzmann, Adi Steinrigl, Bernd-Andreas Schwarz, Valerij Akimkin, Robert Fux, Sandra Blome, Martin Beer
Published in:
Viruses, Issue 9/7, 2017, Page(s) 177, ISSN 1999-4915
Publisher:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/v9070177
Author(s):
Anna Papa, Enkeleda Velo, Perparim Kadiaj, Katerina Tsioka, Anastasia Kontana, Majlinda Kota, Silvia Bino
Published in:
Infection, Genetics and Evolution, Issue 54, 2017, Page(s) 496-500, ISSN 1567-1348
Publisher:
Elsevier BV
DOI:
10.1016/j.meegid.2017.08.017
Author(s):
Kore Schlottau, Bernd Hoffmann, Timo Homeier-Bachmann, Christine Fast, Rainer G. Ulrich, Martin Beer, Donata Hoffmann
Published in:
Archives of Virology, Issue 162/9, 2017, Page(s) 2747-2754, ISSN 0304-8608
Publisher:
Springer Verlag
DOI:
10.1007/s00705-017-3432-z
Author(s):
Jakko van Ingen, Thomas A Kohl, Katharina Kranzer, Barbara Hasse, Peter M Keller, Anna Katarzyna Szafrańska, Doris Hillemann, Meera Chand, Peter Werner Schreiber, Rami Sommerstein, Christoph Berger, Michele Genoni, Christian Rüegg, Nicolas Troillet, Andreas F Widmer, Sören L Becker, Mathias Herrmann, Tim Eckmanns, Sebastian Haller, Christiane Höller, Sylvia B Debast, Maurice J Wolfhagen, Joost
Published in:
The Lancet Infectious Diseases, Issue 17/10, 2017, Page(s) 1033-1041, ISSN 1473-3099
Publisher:
The Lancet Publishing Group
DOI:
10.1016/S1473-3099(17)30324-9
Author(s):
A. Melidou, G. Gioula, M. Exindari, E. Ioannou, K. Gkolfinopoulou, T. Georgakopoulou, S. Tsiodras, A. Papa
Published in:
Journal of Clinical Virology, Issue 94, 2017, Page(s) 29-32, ISSN 1386-6532
Publisher:
Elsevier BV
DOI:
10.1016/j.jcv.2017.07.003
Author(s):
Charlotte Lempp, Nicole Jungwirth, Miguel L. Grilo, Anja Reckendorf, Arlena Ulrich, Abbo van Neer, Rogier Bodewes, Vanessa M. Pfankuche, Christian Bauer, Albert D. M. E. Osterhaus, Wolfgang Baumgärtner, Ursula Siebert
Published in:
PLOS ONE, Issue 12/4, 2017, Page(s) e0175469, ISSN 1932-6203
Publisher:
Public Library of Science
DOI:
10.1371/journal.pone.0175469
Author(s):
Martin C.W. Chan, Yunwen Hu, Haili Chen, Alexander T. Podkolzin, Ekaterina V. Zaytseva, Jun Komano, Naomi Sakon, Yong Poovorawan, Sompong Vongpunsawad, Thanundorn Thanusuwannasak, Joanne Hewitt, Dawn Croucher, Nikail Collins, Jan Vinjé, Xiaoli L. Pang, Bonita E. Lee, Miranda de Graaf, Janko van Beek, Harry Vennema, Marion P.G. Koopmans, Sandra Niendorf, Mateja Poljsak-Prijatelj, Andrej Steyer, Pe
Published in:
Emerging Infectious Diseases, Issue 23/8, 2017, Page(s) 1359-1354, ISSN 1080-6040
Publisher:
US National Center for Infectious Diseases
DOI:
10.3201/eid2308.161138
Author(s):
Panagiotis Papadopoulos, Theofilos Papadopoulos, Apostolos S. Angelidis, Evridiki Boukouvala, Antonios Zdragas, Anna Papa, Christos Hadjichristodoulou, Daniel Sergelidis
Published in:
Food Microbiology, Issue 69, 2018, Page(s) 43-50, ISSN 0740-0020
Publisher:
Academic Press
DOI:
10.1016/j.fm.2017.07.016
Author(s):
N. R. Faria, J. Quick, I.M. Claro, J. Thézé, J. G. de Jesus, M. Giovanetti, M. U. G. Kraemer, S. C. Hill, A. Black, A. C. da Costa, L. C. Franco, S. P. Silva, C.-H. Wu, J. Raghwani, S. Cauchemez, L. du Plessis, M. P. Verotti, W. K. de Oliveira, E. H. Carmo, G. E. Coelho, A. C. F. S. Santelli, L. C. Vinhal, C. M. Henriques, J. T. Simpson, M. Loose, K. G. Andersen, N. D. Grubaugh, S. Somasekar, C.
Published in:
Nature, Issue 546/7658, 2017, Page(s) 406-410, ISSN 0028-0836
Publisher:
Nature Publishing Group
DOI:
10.1038/nature22401
Author(s):
Nathan D. Grubaugh, Jason T. Ladner, Moritz U. G. Kraemer, Gytis Dudas, Amanda L. Tan, Karthik Gangavarapu, Michael R. Wiley, Stephen White, Julien Thézé, Diogo M. Magnani, Karla Prieto, Daniel Reyes, Andrea M. Bingham, Lauren M. Paul, Refugio Robles-Sikisaka, Glenn Oliveira, Darryl Pronty, Carolyn M. Barcellona, Hayden C. Metsky, Mary Lynn Baniecki, Kayla G. Barnes, Bridget Chak, Catherine A. F
Published in:
Nature, Issue 546/7658, 2017, Page(s) 401-405, ISSN 0028-0836
Publisher:
Nature Publishing Group
DOI:
10.1038/nature22400
Author(s):
Hayden C. Metsky, Christian B. Matranga, Shirlee Wohl, Stephen F. Schaffner, Catherine A. Freije, Sarah M. Winnicki, Kendra West, James Qu, Mary Lynn Baniecki, Adrianne Gladden-Young, Aaron E. Lin, Christopher H. Tomkins-Tinch, Simon H. Ye, Daniel J. Park, Cynthia Y. Luo, Kayla G. Barnes, Rickey R. Shah, Bridget Chak, Giselle Barbosa-Lima, Edson Delatorre, Yasmine R. Vieira, Lauren M. Paul, Amanda
Published in:
Nature, Issue 546/7658, 2017, Page(s) 411-415, ISSN 0028-0836
Publisher:
Nature Publishing Group
DOI:
10.1038/nature22402
Author(s):
Anna Papa, Katerina Tsergouli, Katerina Tsioka, Ali Mirazimi
Published in:
Frontiers in Cellular and Infection Microbiology, Issue 7, 2017, ISSN 2235-2988
Publisher:
Frontiers Media S. A.
DOI:
10.3389/fcimb.2017.00213
Author(s):
J. van Beek, A.A. van der Eijk, P.L.A. Fraaij, K. Caliskan, K. Cransberg, M. Dalinghaus, R.A.S. Hoek, H.J. Metselaar, J. Roodnat, H. Vennema, M.P.G. Koopmans
Published in:
Clinical Microbiology and Infection, Issue 23/4, 2017, Page(s) 265.e9-265.e13, ISSN 1198-743X
Publisher:
Blackwell Publishing Inc.
DOI:
10.1016/j.cmi.2016.12.010
Author(s):
F. ALLEWELDT, S. KARA, A. OSINSKI, P. VAN BAAL, K. KELLERBORG, F.M. AARESTRUP, M. KOOPMANS
Published in:
Revue Scientifique et Technique de l'OIE, Issue 36/1, 2017, Page(s) 311-322, ISSN 0253-1933
Publisher:
Office International des Epizooties (OIE)
DOI:
10.20506/rst.36.1.2631
Author(s):
Arnaud Felten, Laurent Guillier, Nicolas Radomski, Michel-Yves Mistou, Renaud Lailler, Sabrina Cadel-Six
Published in:
PLOS ONE, Issue 12/7, 2017, Page(s) e0182082, ISSN 1932-6203
Publisher:
Public Library of Science
DOI:
10.1371/journal.pone.0182082
Author(s):
Djahida Benhouda, Ahcène Hakem, Anna Rosa Sannella, Afaf Benhouda, Simone M. Cacciò
Published in:
Parasite, Issue 24, 2017, Page(s) 15, ISSN 1776-1042
Publisher:
EDP SCIENCES S A
DOI:
10.1051/parasite/2017014
Author(s):
Daniel Cadar, Renke Lühken, Henk van der Jeugd, Mutien Garigliany, Ute Ziegler, Markus Keller, Jennifer Lahoreau, Lars Lachmann, Norbert Becker, Marja Kik, Bas B Oude Munnink, Stefan Bosch, Egbert Tannich, Annick Linden, Volker Schmidt, Marion P Koopmans, Jolianne Rijks, Daniel Desmecht, Martin H Groschup, Chantal Reusken, Jonas Schmidt-Chanasit
Published in:
Eurosurveillance, Issue 22/4, 2017, ISSN 1025-496X
Publisher:
Centre Europeen pour la Surveillance Epidemiologique du SIDA
DOI:
10.2807/1560-7917.ES.2017.22.4.30452
Author(s):
Marjan Wouthuyzen-Bakker, Marjolein Knoester, Aad P van den Berg, Corine H GeurtsvanKessel, Marion PG Koopmans, Coretta Van Leer-Buter, Bob Oude Velthuis, Suzan D Pas, Wilhelmina LM Ruijs, Jonas Schmidt-Chanasit, Stephen GS Vreden, Tjip S van der Werf, Chantal BEM Reusken, Wouter FW Bierman
Published in:
Eurosurveillance, Issue 22/11, 2017, ISSN 1025-496X
Publisher:
Centre Europeen pour la Surveillance Epidemiologique du SIDA
DOI:
10.2807/1560-7917.ES.2017.22.11.30488
Author(s):
Mathis Hjort Hjelmsø, Maria Hellmér, Xavier Fernandez-Cassi, Natàlia Timoneda, Oksana Lukjancenko, Michael Seidel, Dennis Elsässer, Frank M. Aarestrup, Charlotta Löfström, Sílvia Bofill-Mas, Josep F. Abril, Rosina Girones, Anna Charlotte Schultz
Published in:
PLOS ONE, Issue 12/1, 2017, Page(s) e0170199, ISSN 1932-6203
Publisher:
Public Library of Science
DOI:
10.1371/journal.pone.0170199
Author(s):
O. Pipek, D. Ribli, J. Molnár, Á. Póti, M. Krzystanek, A. Bodor, G. E. Tusnády, Z. Szallasi, I. Csabai, D. Szüts
Published in:
BMC Bioinformatics, Issue 18/1, 2017, ISSN 1471-2105
Publisher:
BioMed Central
DOI:
10.1186/s12859-017-1492-4
Author(s):
Miranda de Graaf, Rogier Bodewes, Cornelis E. van Elk, Marco van de Bildt, Sarah Getu, Georgina I. Aron, Georges M.G.M. Verjans, Albert D.M.E. Osterhaus, Judith M.A. van den Brand, Thijs Kuiken, Marion P.G. Koopmans
Published in:
Emerging Infectious Diseases, Issue 23/1, 2017, Page(s) 87-91, ISSN 1080-6040
Publisher:
US National Center for Infectious Diseases
DOI:
10.3201/eid2301.161081
Author(s):
Ana Luisa Toribio, Blaise Alako, Clara Amid, Ana Cerdeño-Tarrága, Laura Clarke, Iain Cleland, Susan Fairley, Richard Gibson, Neil Goodgame, Petra ten Hoopen, Suran Jayathilaka, Simon Kay, Rasko Leinonen, Xin Liu, Josué Martínez-Villacorta, Nima Pakseresht, Jeena Rajan, Kethi Reddy, Marc Rosello, Nicole Silvester, Dmitriy Smirnov, Daniel Vaughan, Vadim Zalunin, Guy Cochrane
Published in:
Nucleic Acids Research, Issue 45/D1, 2017, Page(s) D32-D36, ISSN 0305-1048
Publisher:
Oxford University Press
DOI:
10.1093/nar/gkw1106
Author(s):
Chantal BEM Reusken, V Stalin Raj, Marion P Koopmans, Bart L Haagmans
Published in:
Current Opinion in Virology, Issue 16, 2016, Page(s) 55-62, ISSN 1879-6257
Publisher:
Elsevier BV
DOI:
10.1016/j.coviro.2016.01.004
Author(s):
Janko van Beek, Miranda de Graaf, Ming Xia, Xi Jiang, Jan Vinjé, Mathias Beersma, Erwin de Bruin, David van de Vijver, Melle Holwerda, Marlies van Houten, Annemarie M. Buisman, Rob van Binnendijk, Albert D. M. E. Osterhaus, Fiona van der Klis, Harry Vennema, Marion P. G. Koopmans
Published in:
Journal of General Virology, Issue 97/9, 2016, Page(s) 2255-2264, ISSN 0022-1317
Publisher:
Society for General Microbiology
DOI:
10.1099/jgv.0.000533
Author(s):
C. Gortázar, J. F. Ruiz-Fons, U. Höfle
Published in:
European Journal of Wildlife Research, Issue 62/5, 2016, Page(s) 511-525, ISSN 1612-4642
Publisher:
Springer Verlag
DOI:
10.1007/s10344-016-1033-x
Author(s):
Mathilde Richard, Sander Herfst, Judith M. A. van den Brand, Pascal Lexmond, Theo M. Bestebroer, Guus F. Rimmelzwaan, Marion Koopmans, Thijs Kuiken, Ron A. M. Fouchier
Published in:
PLOS ONE, Issue 10/6, 2015, Page(s) e0129827, ISSN 1932-6203
Publisher:
Public Library of Science
DOI:
10.1371/journal.pone.0129827
Author(s):
José de la Fuente, Iratxe Díez-Delgado, Marinela Contreras, Joaquín Vicente, Alejandro Cabezas-Cruz, Marina Manrique, Raquel Tobes, Vladimir López, Beatriz Romero, Lucas Domínguez, Joseba M. Garrido, Ramón Juste, Christian Gortazar
Published in:
Genome Announcements, Issue 3/3, 2015, Page(s) e00247-15, ISSN 2169-8287
Publisher:
Journals ASM
DOI:
10.1128/genomeA.00247-15
Author(s):
José de la Fuente, Iratxe Díez-Delgado, Marinela Contreras, Joaquín Vicente, Alejandro Cabezas-Cruz, Raquel Tobes, Marina Manrique, Vladimir López, Beatriz Romero, Javier Bezos, Lucas Dominguez, Iker A. Sevilla, Joseba M. Garrido, Ramón Juste, Guillermo Madico, Edward Jones-López, Christian Gortazar
Published in:
PLOS Neglected Tropical Diseases, Issue 9/11, 2015, Page(s) e0004232, ISSN 1935-2735
Publisher:
PUBLIC LIBRARY SCIENCE
DOI:
10.1371/journal.pntd.0004232
Author(s):
Vladimir López, Margarita Villar, João Queirós, Joaquín Vicente, Lourdes Mateos-Hernández, Iratxe Díez-Delgado, Marinela Contreras, Paulo C. Alves, Pilar Alberdi, Christian Gortázar, José de la Fuente
Published in:
PLOS Neglected Tropical Diseases, Issue 10/3, 2016, Page(s) e0004541, ISSN 1935-2735
Publisher:
PUBLIC LIBRARY SCIENCE
DOI:
10.1371/journal.pntd.0004541
Author(s):
Martin Ludlow, Jeroen Kortekaas, Christiane Herden, Bernd Hoffmann, Dennis Tappe, Corinna Trebst, Diane E. Griffin, Hannah E. Brindle, Tom Solomon, Alan S. Brown, Debby van Riel, Katja C. Wolthers, Dasja Pajkrt, Peter Wohlsein, Byron E. E. Martina, Wolfgang Baumgärtner, Georges M. Verjans, Albert D. M. E. Osterhaus
Published in:
Acta Neuropathologica, Issue 131/2, 2016, Page(s) 159-184, ISSN 0001-6322
Publisher:
Springer Verlag
DOI:
10.1007/s00401-015-1511-3
Author(s):
Laura Becker, Matthias Steglich, Stephan Fuchs, Guido Werner, Ulrich Nübel
Published in:
Scientific Reports, Issue 6, 2016, Page(s) 28063, ISSN 2045-2322
Publisher:
Nature Publishing Group
DOI:
10.1038/srep28063
Author(s):
Mart M. Lamers, V. Stalin Raj, Mah’d Shafei, Sami Sheikh Ali, Sultan M. Abdallh, Mahmoud Gazo, Samer Nofal, Xiaoyan Lu, Dean D. Erdman, Marion P. Koopmans, Mohammad Abdallat, Aktham Haddadin, Bart L. Haagmans
Published in:
Emerging Infectious Diseases, Issue 22/4, 2016, Page(s) 716-719, ISSN 1080-6040
Publisher:
US National Center for Infectious Diseases
DOI:
10.3201/eid2204.152065
Author(s):
Alexander Postel, Florian Hansmann, Christine Baechlein, Nicole Fischer, Malik Alawi, Adam Grundhoff, Sarah Derking, Jörg Tenhündfeld, Vanessa Maria Pfankuche, Vanessa Herder, Wolfgang Baumgärtner, Michael Wendt, Paul Becher
Published in:
Scientific Reports, Issue 6, 2016, Page(s) 27735, ISSN 2045-2322
Publisher:
Nature Publishing Group
DOI:
10.1038/srep27735
Author(s):
Alessia Franco, Pimlapas Leekitcharoenphon, Fabiola Feltrin, Patricia Alba, Gessica Cordaro, Manuela Iurescia, Rita Tolli, Mario D’Incau, Monica Staffolani, Elisabetta Di Giannatale, Rene S. Hendriksen, Antonio Battisti
Published in:
PLOS ONE, Issue 10/12, 2015, Page(s) e0144802, ISSN 1932-6203
Publisher:
Public Library of Science
DOI:
10.1371/journal.pone.0144802
Author(s):
Richard Gibson, Blaise Alako, Clara Amid, Ana Cerdeño-Tárraga, Iain Cleland, Neil Goodgame, Petra ten Hoopen, Suran Jayathilaka, Simon Kay, Rasko Leinonen, Xin Liu, Swapna Pallreddy, Nima Pakseresht, Jeena Rajan, Marc Rosselló, Nicole Silvester, Dmitriy Smirnov, Ana Luisa Toribio, Daniel Vaughan, Vadim Zalunin, Guy Cochrane
Published in:
Nucleic Acids Research, Issue 44/D1, 2016, Page(s) D58-D66, ISSN 0305-1048
Publisher:
Oxford University Press
DOI:
10.1093/nar/gkv1311
Author(s):
Rogier Bodewes, Ana Rubio García, Sophie M. Brasseur, Guillermo J. Sanchez Conteras, Marco W. G. van de Bildt, Marion P. G. Koopmans, Albert D. M. E. Osterhaus, Thijs Kuiken
Published in:
PLOS ONE, Issue 10/12, 2015, Page(s) e0144899, ISSN 1932-6203
Publisher:
Public Library of Science
DOI:
10.1371/journal.pone.0144899
Author(s):
Sébastien Matamoros, Jarne M. van Hattem, Maris S. Arcilla, Niels Willemse, Damian C. Melles, John Penders, Trung Nguyen Vinh, Ngo Thi Hoa, Menno D. de Jong, Constance Schultsz
Published in:
Scientific Reports, Issue 7/1, 2017, ISSN 2045-2322
Publisher:
Nature Publishing Group
DOI:
10.1038/s41598-017-15539-7
Author(s):
M. Beer, K. Wernike, C. Dräger, D. Höper, A. Pohlmann, C. Bergermann, C. Schröder, S. Klinkhammer, S. Blome, B. Hoffmann
Published in:
Transboundary and Emerging Diseases, 2016, ISSN 1865-1674
Publisher:
Blackwell-Wiss.-Verl
DOI:
10.1111/tbed.12532
Author(s):
Armando Arias, Simon J. Watson, Danny Asogun, Ekaete Alice Tobin, Jia Lu, My V. T. Phan, Umaru Jah, Raoul Emeric Guetiya Wadoum, Luke Meredith, Lucy Thorne, Sarah Caddy, Alimamy Tarawalie, Pinky Langat, Gytis Dudas, Nuno R. Faria, Simon Dellicour, Abdul Kamara, Brima Kargbo, Brima Osaio Kamara, Sahr Gevao, Daniel Cooper, Matthew Newport, Peter Horby, Jake Dunning, Foday Sahr, Tim Brooks, Andrew J.
Published in:
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Emerging Infectious Diseases, Issue 22/7, 2016, Page(s) 1249-1252, ISSN 1080-6040
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Eurosurveillance, Issue 22/50, 2017, ISSN 1560-7917
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Emerging Infectious Diseases, Issue 23/12, 2017, Page(s) 2089-2091, ISSN 1080-6040
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Scientific Data, Issue 5, 2018, Page(s) 180017, ISSN 2052-4463
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Genome Announcements, Issue 6/5, 2018, Page(s) e01503-17, ISSN 2169-8287
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Eurosurveillance, Issue 23/4, 2018, ISSN 1025-496x
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Nature, Issue 557/7705, 2018, Page(s) 418-423, ISSN 0028-0836
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PLOS ONE, Issue 13/5, 2018, Page(s) e0195885, ISSN 1932-6203
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Eurosurveillance, Issue 22/23, 2017, ISSN 1025-496X
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DOI:
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Virus Evolution, 2017, ISSN 2057-1577
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New England Journal of Medicine, Issue 379/14, 2018, Page(s) 1377-1379, ISSN 0028-4793
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Virus Research, Issue 258, 2018, Page(s) 55-63, ISSN 0168-1702
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The American Journal of Bioethics, Issue 18/10, 2018, Page(s) 55-57, ISSN 1526-5161
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Science, Issue Vol. 362, Issue 6413,, 2018, Page(s) pp. 404-406, ISSN 1095-9203
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PLOS ONE, Issue 11/6, 2016, Page(s) e0157718, ISSN 1932-6203
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Emerging Infectious Diseases, Issue 22/12, 2016, Page(s) 2037-2044, ISSN 1080-6040
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Emerging Infectious Diseases, Issue 22/12, 2016, Page(s) 2189-2191, ISSN 1080-6040
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International Journal of Food Microbiology, Issue 292, 2019, Page(s) 72-82, ISSN 0168-1605
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Risk Analysis, Issue 2018, 2018, ISSN 0272-4332
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Epidemiology and Infection, Issue 147, 2019, ISSN 0950-2688
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Viruses, Issue 11/1, 2019, Page(s) 22, ISSN 1999-4915
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Multidisciplinary Digital Publishing Institute (MDPI)
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Nature Communications, Issue 10/1, 2019, ISSN 2041-1723
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Infection, Genetics and Evolution, Issue 66, 2018, Page(s) 180-187, ISSN 1567-1348
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Zoonoses and Public Health, Issue 66/2, 2019, Page(s) 254-258, ISSN 1863-1959
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Parasites & Vectors, Issue 12/1, 2019, ISSN 1756-3305
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BMC Genomics, Issue 20/1, 2019, ISSN 1471-2164
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Scientific Reports, Issue 8/1, 2018, ISSN 2045-2322
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Nature Publishing Group
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Ticks and Tick-borne Diseases, Issue 9/1, 2018, Page(s) 104-108, ISSN 1877-959X
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Journal of Antimicrobial Chemotherapy, Issue 74/2, 2018, Page(s) 298-310, ISSN 0305-7453
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Expert Review of Proteomics, Issue 15/8, 2018, Page(s) 627-635, ISSN 1478-9450
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International Journal of Food Microbiology, Issue 291, 2019, Page(s) 35-41, ISSN 0168-1605
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Ticks and Tick-borne Diseases, Issue 10/2, 2019, Page(s) 336-343, ISSN 1877-959X
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Journal of Comparative Pathology, Issue 158, 2018, Page(s) 71-76, ISSN 0021-9975
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PeerJ, Issue 7, 2019, Page(s) e6561, ISSN 2167-8359
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Virus Evolution, Issue 3/1, 2017, ISSN 2057-1577
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Tuberculosis, Issue 114, 2019, Page(s) 103-112, ISSN 1472-9792
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International Journal of Medical Microbiology, Issue 309/3-4, 2019, Page(s) 189-193, ISSN 1438-4221
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Journal of Clinical Microbiology, 2019, ISSN 0095-1137
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Molecular and Cellular Probes, 2019, ISSN 0890-8508
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Emerging Infectious Diseases, Issue 25/6, 2019, Page(s) 1169-1176, ISSN 1080-6040
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Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
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Nature Publishing Group
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Veterinary Microbiology, Issue 224, 2018, Page(s) 100-106, ISSN 0378-1135
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Infection, Genetics and Evolution, Issue 73, 2019, Page(s) 49-54, ISSN 1567-1348
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Expert Review of Molecular Diagnostics, Issue 19/6, 2019, Page(s) 531-536, ISSN 1473-7159
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Archives of Virology, Issue 164/6, 2019, Page(s) 1673-1675, ISSN 0304-8608
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Journal of Antimicrobial Chemotherapy, Issue 74/6, 2019, Page(s) 1494-1502, ISSN 0305-7453
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Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
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Nature Publishing Group
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mBio, Issue 9/6, 2018, ISSN 2161-2129
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Clinical Infectious Diseases, 2019, ISSN 1058-4838
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Microbial Genomics, Issue 5/5, 2019, ISSN 2057-5858
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Italian Journal of Food Safety, Issue 7/4, 2019, ISSN 2239-7132
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Viruses, Issue 11/5, 2019, Page(s) 478, ISSN 1999-4915
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Emerging Microbes & Infections, Issue 7/1, 2018, Page(s) 1-4, ISSN 2222-1751
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Virus Evolution, Issue 5/1, 2019, ISSN 2057-1577
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The European Journal of Health Economics, 2019, ISSN 1618-7598
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Nature Microbiology, 2019, ISSN 2058-5276
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Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
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Nature Publishing Group
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Veterinary Record, Issue 178/6, 2016, Page(s) 141.1-141, ISSN 0042-4900
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Trends in Microbiology, Issue 24/4, 2016, Page(s) 241-245, ISSN 0966-842X
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Genome Announcements, Issue 3/3, 2015, Page(s) e00535-15, ISSN 2169-8287
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Emerging Infectious Diseases, Issue 21/5, 2015, Page(s) 860-863, ISSN 1080-6040
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Science Translational Medicine, Issue 7/307, 2015, Page(s) 307rv5-307rv5, ISSN 1946-6234
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The Lancet Infectious Diseases, Issue 16/3, 2016, Page(s) 286-287, ISSN 1473-3099
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Frontiers in Microbiology, Issue 6, 2015, ISSN 1664-302X
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The Lancet Infectious Diseases, Issue 16/2, 2016, Page(s) 147-149, ISSN 1473-3099
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Journal of Virology, 2016, Page(s) JVI.03046-15, ISSN 0022-538X
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Journal of Medical Virology, 2016, Page(s) n/a-n/a, ISSN 0146-6615
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Proceedings of the National Academy of Sciences, Issue 112/49, 2015, Page(s) 15190-15195, ISSN 0027-8424
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Emerging Infectious Diseases, Issue 21/7, 2015, Page(s) 1205-1208, ISSN 1080-6040
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Emerging Infectious Diseases, Issue 25/10, 2019, Page(s) 1973-1976, ISSN 1080-6040
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Emerging Infectious Diseases, Issue 22/12, 2016, Page(s) 2225-2225, ISSN 1080-6040
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Emerging Infectious Diseases, Issue 23/4, 2017, Page(s) 633-636, ISSN 1080-6040
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Emerging Infectious Diseases, Issue 23/3, 2017, Page(s) 477-481, ISSN 1080-6040
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Emerging Infectious Diseases, Issue 23/3, 2017, Page(s) 529-532, ISSN 1080-6040
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Molecular Biology and Evolution, Issue 33/8, 2016, Page(s) 2167-2169, ISSN 0737-4038
Publisher:
Oxford University Press
DOI:
10.1093/molbev/msw082
Author(s):
David F. Nieuwenhuijse, Marion P. G. Koopmans
Published in:
Frontiers in Microbiology, Issue 8, 2017, ISSN 1664-302X
Publisher:
Frontiers Media
DOI:
10.3389/fmicb.2017.00230
Author(s):
Josanne H. Verhagen, Pascal Lexmond, Oanh Vuong, Martin Schutten, Judith Guldemeester, Albert D. M. E. Osterhaus, Armin R. W. Elbers, Roy Slaterus, Menno Hornman, Guus Koch, Ron A. M. Fouchier
Published in:
PLOS ONE, Issue 12/3, 2017, Page(s) e0173470, ISSN 1932-6203
Publisher:
Public Library of Science
DOI:
10.1371/journal.pone.0173470
Author(s):
Anna Papa, Anastasia Kontana, Katerina Tsioka, Anastasios Saratsis, Smaragda Sotiraki
Published in:
Ticks and Tick-borne Diseases, Issue 8/1, 2017, Page(s) 157-160, ISSN 1877-959X
Publisher:
Elsevier BV
DOI:
10.1016/j.ttbdis.2016.10.012
Author(s):
Emilio Mordini
Published in:
Bioethics, Issue 30/6, 2016, Page(s) 382-383, ISSN 0269-9702
Publisher:
Blackwell Publishing Inc.
DOI:
10.1111/bioe.12269
Author(s):
Christian Gortázar, Joaquín Vicente, Margarita Villar, Francisco Ruiz-Fons, Ursula Höfle, José de la Fuente
Published in:
Current Trends in Wildlife Research, Issue Part of the Wildlife Research Monographs book series (WIREMO, volume 1), 2016, Page(s) 55-78, ISBN 978-3-319-27910-7
Publisher:
Springer International Publishing
DOI:
10.1007/978-3-319-27912-1_3
Author(s):
János Márk Szalai-Gindl, Attila Kiss, Gábor Halász, László Dobos, István Csabai
Published in:
New Knowledge in Information Systems and Technologies - Volume 2, Issue 931, 2019, Page(s) 663-672, ISBN 978-3-030-16183-5
Publisher:
Springer International Publishing
DOI:
10.1007/978-3-030-16184-2_63
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