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HARNESSING THE POWER OF NATURE THROUGH PRODUCTIVE MICROBIAL CONSORTIA IN BIOTECHNOLOGY – MEASURE, MODEL, MASTER

Deliverables

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Publications

Development of an Automated Online Flow Cytometry Method to Quantify Cell Density and Fingerprint Bacterial Communities

Author(s): Juan López-Gálvez, Konstanze Schiessl, Michael D. Besmer, Carmen Bruckmann, Hauke Harms, Susann Müller
Published in: Cells, Issue 12, 2023, Page(s) 1559, ISSN 2073-4409
Publisher: MDPI
DOI: 10.3390/cells12121559

New strategy for bioplastic and exopolysaccharides production: Enrichment of field microbiomes with cyanobacteria

Author(s): Beatriz Altamira-Algarra, Estel Rueda, Artai Lage, David San León, Juan F. Martínez-Blanch, Juan Nogales, Joan García, Eva Gonzalez-Flo
Published in: New Biotechnology, Issue 78, 2023, Page(s) 141-149, ISSN 1871-6784
Publisher: Elsevier BV
DOI: 10.1016/j.nbt.2023.10.008

Monitoring PHB production in Synechocystis sp. with hyperspectral images

Author(s): Francisco Rodríguez Lorenzo; Miguel Placer Lorenzo; Luz Herrero Castilla; Juan Antonio Álvarez Rodríguez; Sandra Iglesias; Santiago Gómez; Juan Manuel Fernández Montenegro; Estel Rueda; Rubén Diez-Montero; Joan Garcia; Eva Gonzalez-Flo
Published in: Water Science & Technology, 2022, ISSN 1996-9732
Publisher: IWA Publishing
DOI: 10.2166/wst.2022.194

Novel approaches to energize microbial biocatalysts

Author(s): Gonzalo Durante‐Rodríguez, Manuel Carmona, Eduardo Díaz
Published in: Environmental Microbiology, Issue 25, 2023, Page(s) 161-166, ISSN 1462-2912
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/1462-2920.16254

Toward merging bottom–up and top–down model-based designing of synthetic microbial communities

Author(s): David San León & Juan Nogales
Published in: Current Opinion in Microbiology, 2022, ISSN 1369-5274
Publisher: Elsevier BV
DOI: 10.1016/j.mib.2022.102169

Photosynthetic species composition determines bioplastics production in microbiomes: Strategy to enrich cyanobacteria PHB-producers

Author(s): Beatriz Altamira-Algarra, Artai Lage, Joan García, Eva Gonzalez-Flo
Published in: Algal Research, Issue 79, 2024, Page(s) 103469, ISSN 2211-9264
Publisher: Elsevier BV
DOI: 10.1016/j.algal.2024.103469

Exploiting synergies between microbial electrochemical technologies and synthetic biology

Author(s): Bin Lai, Jens Krömer, Federico Aulenta, Hui Wu, Pablo Ivan Nikel
Published in: Microbial Biotechnology, Issue 16, 2023, Page(s) 485-488, ISSN 1751-7915
Publisher: Wiley
DOI: 10.1111/1751-7915.14208

When microbial biotechnology meets material engineering

Author(s): Ana M. Hernández-Arriaga, Cristina Campano, Virginia Rivero-Buceta, M. Auxiliadora Prieto
Published in: Microbial Biotechnology, 2022, ISSN 1751-7915
Publisher: Willey
DOI: 10.1111/1751-7915.13975

A general deep hybrid model for bioreactor systems: Combining first principles with deep neural networks

Author(s): José Pinto, Mykaella Mestre, J.Ramos, Rafael S.Costa, Gerald Striedner, RuiOliveira
Published in: Computers & Chemical Engineering, 2022, ISSN 0098-1354
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.compchemeng.2022.107952

Cyanobacterial biofilms: from natural systems to applications

Author(s): Mahir Bozan, Hannah Berreth, Pia Lindberg, Katja Bühler
Published in: Trends in Biotechnology, 2024, ISSN 0167-7799
Publisher: Elsevier BV
DOI: 10.1016/j.tibtech.2024.08.005

Challenges, progress, and future perspectives for cyanobacterial polyhydroxyalkanoate production

Author(s): Estel Rueda, Eva Gonzalez-Flo, Soumila Mondal, Karl Forchhammer, Dulce María Arias, Katharina Ludwig, Bernhard Drosg, Ines Fritz, C. Raul Gonzalez-Esquer, Sara Pacheco, Joan García
Published in: Reviews in Environmental Science and Bio/Technology, Issue 23, 2024, Page(s) 321-350, ISSN 1569-1705
Publisher: Kluwer Academic Publishers
DOI: 10.1007/s11157-024-09689-0

A Coculture of Photoautotrophs and Hydrolytic Heterotrophs Enables Efficient Upcycling of Starch from Wastewater toward Biomass-Derived Products: Synergistic Interactions Impacting Metabolism of the Consortium

Author(s): Minmin Pan, Yiru Wang, Jens O. Krömer, Xinyu Zhu, Marie Karen Tracy Hong Lin, Irini Angelidaki
Published in: Environmental Science & Technology, Issue 57, 2023, Page(s) 15523-15532, ISSN 0013-936X
Publisher: American Chemical Society
DOI: 10.1021/acs.est.3c05321

SBML2HYB: a Python interface for SBML compatible hybrid modeling

Author(s): José Pinto, Rafael S Costa, Leonardo Alexandre, João Ramos, Rui Oliveira
Published in: Bioinformatics, 2023, ISSN 1367-4803
Publisher: Oxford University Press
DOI: 10.1093/bioinformatics/btad044

Enhancing biodesulfurization by engineering a synthetic dibenzothiophene mineralization pathway

Author(s): Igor Martínez, Magdy El-Said Mohamed, José Luis García, Eduardo Díaz
Published in: Frontiers in Microbiology, Issue 13, 2022, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2022.987084

Ecological forces dictate microbial community assembly processes in bioreactor systems

Author(s): Shuang LiSusann Müller
Published in: Current Opinion in Biotechnology, 2023, ISSN 0958-1669
Publisher: Elsevier BV
DOI: 10.1016/j.copbio.2023.102917

Current advances in engineering cyanobacteria and their applications for photosynthetic butanol production

Author(s): Xufeng Liu, Hao Xie, Stamatina Roussou, Peter Lindblad
Published in: Current Opinion in Biotechnology, 2021, ISSN 0958-1669
Publisher: Elsevier BV
DOI: 10.1016/j.copbio.2021.07.014

Microalgae harvesting for wastewater treatment and resources recovery: A review

Author(s): Etiele Greque de Morais, Igor Carvalho Fontes Sampaio, Eva Gonzalez-Flo, Ivet Ferrer, Enrica Uggetti, Joan García
Published in: New Biotechnology, Issue 78, 2023, Page(s) 84-94, ISSN 1871-6784
Publisher: Elsevier BV
DOI: 10.1016/j.nbt.2023.10.002

Enhancing tellurite and selenite bioconversions by overexpressing a methyltransferase from <i>Aromatoleum</i> sp. CIB

Author(s): Elena Alonso‐Fernandes, Helga Fernández‐Llamosas, Irene Cano, Cristina Serrano‐Pelejero, Laura Castro, Eduardo Díaz, Manuel Carmona
Published in: Microbial Biotechnology, Issue 16, 2023, Page(s) 915-930, ISSN 1751-7915
Publisher: Willey
DOI: 10.1111/1751-7915.14162

New Insights on Metabolic Features of Bacillus subtilis Based on Multistrain Genome-Scale Metabolic Modeling

Author(s): Blas Blázquez, David San León, Antonia Rojas, Marta Tortajada, Juan Nogales
Published in: International Journal of Molecular Sciences, Issue 24, 2023, Page(s) 7091, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms24087091

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