Deliverables
This deliverable will provide the reference on how to collect, structure, and prepare the data to inputs the models and maps developed in WP4
Risk registerRegister with all the risks noted by each WP, at project submission and updated during implementation of the project. It will also consist of a detailed description of the risks, their impact, and suitable preventive and response measures. This document will be updated at M24, M36 and M48.
Project management planReport with procedures for providing day-to-day administrative guidance, coordination & troubleshooting for the MOOD consortium partners
Preliminary report on impact and innovation pathwayThis report will describe the innovation process and set up the methodology to monitor the impact of the MOOD project through the outcome assessment and the theory of change that is at work Some preliminary results about the KeyPerformance Indicators concerning the first outputs will be given
Scientific report on prototype pathogens and disease profilesFor each selected pathogen and disease, a detailed profile based on the state-of-the-art of the scientific knowledge and knowledge gaps will be produced.
Report on outreach of outcomesThe analysis of the outreach of the outcomes will be based on two crossed sources : a multicriteria evaluation method (OASIS-like survey) to compare end-user practices in the case countries at start and end of the project and a participatory assessment based on narratives of the change and participatory indicators.
Guidelines for consideration of local stakeholders' engagementThe guidelines will be built during and following the workshops with the local stakeholders of the study case in Corsica and Occitanie.
Report on users’ needsThe synthesis of operational needs will be based on the results of the crossed socio-technical analysis of individual interviews, and also the conclusions of the 2 first workshops about the operational problems to solve.
Report on learning loops fostering the utility of social and technical innovationsThe lessons learnt from the collective learning of co-conception of tools and services (3 loops) will be summarised.
The dataset used within the project and processed according to DL3.1. These data will be stored in a traditional structured database system and made available through this database.
Integration chain (processing algorithms and protocols) for disease datasetsThis deliverable will describe the data integration toolchain, including the data processing algorithms and the data exchange protocols that are focused on disease data, associated with Task 3.3 of WP3 and also with implications regarding other tasks (e.g., Tasks 3.1 and 3.4 of WP3). The envisioned toolchain will focus on data standardization and linking between disease and covariate data, according to spatial and temporal dimensions, and combining text-mining, spatial analysis, and semantic approaches. Specifically, the toolchain will ingest and standardize the different types of data, geo-reference the disease data in order for it to be linked to particular covariates, and make the results available for subsequent tasks. Deliverable 3.2 will specifically focus on the tools regarding data integration (e.g., the geo-referencing component), tailored for the processing of disease data.
Linking chain (processing algorithms and protocols) for disease and covariate datasetsThe linking task is based on algorithms and processing that will be proposed, implemented and evaluated. These linking algorithms/process need specific features (and set of features) to extract in the disease and covariate data.
Project website (implemented via a Content Management System) and social media pages and channels including Twitter, , Linkedin, TIB (https://av.tib.eu/), Zenodo.org, and similar. Publication steps, house-style-sheet, and roles and responsibilities will be described in the project manual.
Data processing tutorials, good practice documents and technical reports will be released via github (source code) with a copy on zenodo.org using the Github-zenodo webhooks (see e.g. https://doi.org/10.25815/3YZR-1564).
The DMP will detail what data MOOD will generate and how, how it will be curated and preserved, what datasets will be open, whether and how datasets will be exploited or made accessible for verification and re-use. First version delivered at month 6 and updated version at month 18 and 36.
Publications
Author(s):
Célia Bernard, Philippe Holzmuller, Madiou Thierno Bah, Matthieu Bastien, Benoit Combes, Ferran Jori, Vladimir Grosbois and Laurence Vial
Published in:
Frontiers in Veterinary Science, Issue 22971769, 2022, ISSN 2297-1769
Publisher:
Frontiers Media S.A.
DOI:
10.3389/fvets.2022.1007631
Author(s):
Juanjuan Zhang, Maria Litvinova, Wei Wang, Yan Wang, Xiaowei Deng, Xinghui Chen, Mei Li, Wen Zheng, Lan Yi, Xinhua Chen, Qianhui Wu, Yuxia Liang, Xiling Wang, Juan Yang, Kaiyuan Sun, Ira M Longini, M Elizabeth Halloran, Peng Wu, Benjamin J Cowling, Stefano Merler, Cecile Viboud, Alessandro Vespignani, Marco Ajelli, Hongjie Yu
Published in:
The Lancet Infectious Diseases, Issue 20/7, 2020, Page(s) 793-802, ISSN 1473-3099
Publisher:
The Lancet Publishing Group
DOI:
10.1016/s1473-3099(20)30230-9
Author(s):
Simon Dellicour, Mandev S Gill, Nuno R Faria, Andrew Rambaut, Oliver G Pybus, Marc A Suchard, Philippe Lemey
Published in:
Molecular Biology and Evolution, Issue Volume 38, Issue 8, August 2021, 2021, Page(s) 3486–3493, ISSN 1537-1719
Publisher:
Oxford University Press
DOI:
10.1093/molbev/msab031
Author(s):
Fanny Bouyer, Oumy Thiongane, Alexandre Hobeika, Elena Arsevska, Aurélie Binot, Déborah Corrèges, Timothée Dub, Henna Mäkelä, Esther van Kleef, Ferran Jori, Renaud Lancelot, Alize Mercier, Francesca Fagandini, Sarah Valentin, Wim Van Bortel & Claire Ruault
Published in:
BMC Public Health, Issue 24, 973, 2024, ISSN 1471-2458
Publisher:
BioMed Central
DOI:
10.1186/s12889-024-18466-1
Author(s):
Francesca Dagostin, Valentina Tagliapietra, Giovanni Marini, Claudia Cataldo, Maria Bellenghi, Scilla Pizzarelli, Rosaria Rosanna Cammarano, William Wint, Neil S Alexander, Markus Neteler, Julia Haas, Timothée Dub, Luca Busani, Annapaola Rizzoli
Published in:
Eurosurveillance, Issue Volume 28, Issue 42, 2023, ISSN 1560-7917
Publisher:
ECDC
DOI:
10.2807/1560-7917.es.2023.28.42.2300121
Author(s):
Van Borm S, Boseret G, Dellicour S, Steensels M, Roupie V, Vandenbussche F, Mathijs E, Vilain A, Driesen M, Dispas M, Delcloo AW, Lemey P, Mertens I, Gilbert M, Lambrecht B, van den Berg T
Published in:
Emerging Infectious Diseases, Issue 29(2), 2023, Page(s) 351-359, ISSN 1080-6059
Publisher:
Centers for Disease Control and Prevention
DOI:
10.3201/eid2902.220765
Author(s):
Nejat Arinik; Roberto Interdonato; Mathieu Roche; Maguelonne Teisseire
Published in:
IEEE Access, Issue 35, 2023, Page(s) 11 : 31880- 31901, ISSN 2169-3536
Publisher:
Institute of Electrical and Electronics Engineers Inc.
DOI:
10.1109/access.2023.3262462
Author(s):
Andrea Bizzotto, Giorgio Guzzetta, Valentina Marziano, Martina Del Manso, Alberto Mateo Urdiales, Daniele Petrone, Andrea Cannone, Chiara Sacco, Piero Poletti, Mattia Manica, Agnese Zardini, Filippo Trentini, Massimo Fabiani, Antonino Bella, Flavia Riccardo, Patrizio Pezzotti, Marco Ajelli, Stefano Merler
Published in:
Frontiers in Public Health, Issue 12, 2024, ISSN 2296-2565
Publisher:
Frontiers Media S.A.
DOI:
10.3389/fpubh.2024.1430920
Author(s):
Cheng Zhao, Burcu Tepekule, Nicola G. Criscuolo, Pedro D. Wendel Garcia, Matthias P. Hilty, RISC-19-ICU consortium Investigators in Switzerland, Thierry Fumeaux, Thomas Van Boeckel
Published in:
Swiss Medical Weekly, Issue 150, 2020, Page(s) w20277, ISSN 1424-3997
Publisher:
EMH Swiss Medical Publishers Ltd.
DOI:
10.4414/smw.2020.20277
Author(s):
Giulia Mencattelli, Marie Henriette Dior Ndione, Andrea Silverj, Moussa Moise Diagne, Valentina Curini, Liana Teodori, Marco Di Domenico, Rassoul Mbaye, Alessandra Leone, Maurilia Marcacci, Alioune Gaye, ElHadji Ndiaye, Diawo Diallo, Massimo Ancora, Barbara Secondini, Valeria Di Lollo, Iolanda Mangone, Andrea Bucciacchio, Andrea Polci, Giovanni Marini, Roberto Rosà, Nicola Segata, Gamou Fall, Ces
Published in:
Nature Communications, Issue 14, 6440, 2023, ISSN 2041-1723
Publisher:
Nature Publishing Group
DOI:
10.1038/s41467-023-42185-7
Author(s):
Giovanni Marini, Andrea Pugliese, William Wint, Neil S. Alexander, Annapaola Rizzoli, Roberto Rosà
Published in:
One Health, Issue Volume 15, 2022, Page(s) 100462, ISSN 2352-7714
Publisher:
Elsevier B.V.
DOI:
10.1016/j.onehlt.2022.100462
Author(s):
Mattia Mazzoli, PhD, Eugenio Valdano, PhD, Vittoria Colizza
Published in:
Journal of Travel Medicine, Issue Volume 28, Issue 7, 2021, Page(s) aab129, ISSN 1708-8305
Publisher:
International Society of Travel Medicine
DOI:
10.1093/jtm/taab129
Author(s):
Elena Arsevska, Tomislav Hengl, David A. Singleton, Peter-John M. Noble, Cyril Caminade, Obiora Eneanya, Philip H. Jones, Kayleigh Hansford, Jolyon Medlock, Carmelo Bonannella, Alan D. Radford
Published in:
Parasites Vectors, Issue 17, 29, 2024, ISSN 1756-3305
Publisher:
BioMed Central
DOI:
10.1186/s13071-023-06094-4
Author(s):
Laura Di Domenico, Yair Goldberg, Vittoria Colizza
Published in:
Infectious Disease Modelling, Issue 10, 2024, Page(s) 150-162, ISSN 2468-0427
Publisher:
Elsevier B.V
DOI:
10.1016/j.idm.2024.09.002
Author(s):
Giulia Pullano, Eugenio Valdano, Nicola Scarpa, Stefania Rubrichi, Vittoria Colizza
Published in:
The Lancet Digital Health, Issue 2/12, 2020, Page(s) e638-e649, ISSN 2589-7500
Publisher:
Elsevier
DOI:
10.1016/s2589-7500(20)30243-0
Author(s):
Diana Erazo, Maria F. Vincenti-Gonzalez, Joris A. F. van Loenhout, Pierre Hubin, Mathil Vandromme, Piet Maes, Maxime Taquet, Johan Van Weyenbergh, Lucy Catteau and Simon Dellicour
Published in:
Viruses, Issue 14(6), 2022, Page(s) 1315, ISSN 1999-4915
Publisher:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/v14061315
Author(s):
Ranya Mulchandani, Cheng Zhao, Katie Tiseo, João Pires, Thomas Van Boeckel
Published in:
Emerging Infectious Diseases, Issue Volume 30, Number 1, 2024, ISSN 1080-6059
Publisher:
Center for Disease Control and Prevention
DOI:
10.3201/eid3001.221450
Author(s):
Francesco Bonacina, Pierre-Yves Boëlle, Vittoria Colizza, Olivier Lopez, Maud Thomas, Chiara Poletto
Published in:
International Journal of Infectious Diseases, Issue January 03, 2023, 2023, ISSN 1878-3511
Publisher:
Amsterdam Elsevier
DOI:
10.1016/j.ijid.2022.12.042
Author(s):
Sarah Valentina, Elena Arsevska, Julien Rabatel, Sylvain Falala, Alizé Mercier, Renaud Lancelot, Mathieu Roche
Published in:
One Health, Issue Vol 13, Dec 2021, 2021, Page(s) 100357, ISSN 2352-7714
Publisher:
Elsevier
DOI:
10.1016/j.onehlt.2021.100357
Author(s):
Mark Zeller, Karthik Gangavarapu, Catelyn Anderson, Allison R. Smither, John A. Vanchiere, Rebecca Rose, Daniel J. Snyder, Gytis Dudas, Alexander Watts, Nathaniel L. Matteson, Refugio Robles-Sikisaka, Maximilian Marshall, Amy K. Feehan, Gilberto Sabino-Santos, Antoinette R. Bell-Kareem, Laura D. Hughes, Manar Alkuzweny, Patricia Snarski, Julia Garcia-Diaz, Rona S. Scott, Lilia I. Melnik, Raphaëll
Published in:
Cell, Issue Volume 184, Issue 19, 2021, 2021, Page(s) 4939-4952.e15, ISSN 0092-8674
Publisher:
Cell Press
DOI:
10.1016/j.cell.2021.07.030
Author(s):
Benjamin Faucher, Chiara E. Sabbatini, Peter Czuppon, Moritz U. G. Kraemer, Philippe Lemey, Vittoria Colizza, François Blanquart, Pierre-Yves Boëlle & Chiara Poletto
Published in:
Nature communications, Issue 15, 2152, 2024, ISSN 2041-1723
Publisher:
Nature Publishing Group
DOI:
10.1038/s41467-024-46345-1
Author(s):
Christine Giesen, Zaida Herrador, Beatriz Fernandez-Martinez, Jordi Figuerola, Laura Gangoso, Ana Vazquez, Diana Gómez-Barroso
Published in:
One Health, Issue Volume 16, 2023, Page(s) 100478, ISSN 2352-7714
Publisher:
Elsevier BV
DOI:
10.1016/j.onehlt.2022.100478
Author(s):
Nuno R. Faria, Thomas A. Mellan, Charles Whittaker, Ingra M. Claro, Darlan da S. Candido, Swapnil Mishra, Myuki A. E. Crispim, Flavia C. S. Sales, Iwona Hawryluk, John T. McCrone, Ruben J. G. Hulswit, Lucas A. M. Franco, Mariana S. Ramundo, Jaqueline G. de Jesus, Pamela S. Andrade, Thais M. Coletti, Giulia M. Ferreira, Camila A. M. Silva, Erika R. Manuli, Rafael H. M. Pereira, Pedro S. Peixoto, Mo
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Science, Issue 372/6544, 2021, Page(s) 815-821, ISSN 0036-8075
Publisher:
American Association for the Advancement of Science
DOI:
10.1126/science.abh2644
Author(s):
Mehtab Alam Syed, Elena Arsevska, Mathieu Roche & Maguelonne Teisseire
Published in:
Cartography and Geographic Information Science, 2023, ISSN 1545-0465
Publisher:
TAYLOR & FRANCIS INC
DOI:
10.1080/15230406.2023.2264753
Author(s):
Laura Di Domenico, Giulia Pullano, Chiara E. Sabbatini, Pierre-Yves Boëlle, Vittoria Colizza
Published in:
Nature Communications, Issue 12/1, 2021, Page(s) 1073, ISSN 2041-1723
Publisher:
Nature Publishing Group
DOI:
10.1038/s41467-021-21249-6
Author(s):
Nejat Arınık, Wim Van Bortel, Bahdja Boudoua, Luca Busani, Rémy Decoupes, Roberto Interdonato, Rodrique Kafando, Esther van Kleef, Mathieu Roche, Mehtab Alam Syed, Maguelonne Teisseire
Published in:
Data in Brief, Issue Volume 46, 2023, Page(s) 108870, ISSN 2352-3409
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10.1016/j.dib.2022.108870
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Sabrina L Li, Jane P Messina, Oliver G Pybus, Moritz U G Kraemer, Lauren Gardner
Published in:
Transactions of The Royal Society of Tropical Medicine and Hygiene, Issue trab009, 2021, ISSN 0035-9203
Publisher:
Royal Society of Tropical Medicine and Hygiene
DOI:
10.1093/trstmh/trab009
Author(s):
Laura Di Domenico, Chiara E Sabbatini, Giulia Pullano, Daniel Lévy-Bruhl, Vittoria Colizza
Published in:
Eurosurveillance, Issue 26/15, 2021, ISSN 1560-7917
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ECDC
DOI:
10.2807/1560-7917.es.2021.26.15.2100272
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Diana Erazo, Luke Grant, Guillaume Ghisbain, Giovanni Marini, Felipe J Colón-González, William Wint, Annapaola Rizzoli, Wim Van Bortel, Chantal B.F. Vogels, Nathan D. Grubaugh, Matthias Mengel, Katja Frieler, Wim Thiery, Simon Dellicour
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Nature Communications, Issue 15, Article number: 1196, 2024, ISSN 2041-1723
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Nature Publishing Group
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Published in:
Clinical Infectious Diseases, Issue Volume 75, Issue 1, 1 July 2022, 2022, Page(s) Pages e234–e240, ISSN 1058-4838
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University of Chicago Press
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10.1093/cid/ciab836
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Vogels CBF, Brackney DE, Dupuis II AP, Robich RM, Fauver JR, Brito AF, Williams SC, Anderson JF, Lubelczyk CB, Lange RE, Prusinski MA, Kramer LD, Gangloff-Kaufmann JL, Goodman LB, Baele G, Smith RP, Armstrong PM, Ciota AT, Dellicour S, Grubaugh ND
Published in:
PNAS, Issue 120 (16) e2218012120, 2023, ISSN 1091-6490
Publisher:
National Academy of Sciences
DOI:
10.1073/pnas.2218012120
Author(s):
Katie Tiseo, Laura Huber, Marius Gilbert, Timothy P. Robinson, Thomas P. Van Boeckel
Published in:
Antibiotics, Issue 9/12, 2020, Page(s) 918, ISSN 2079-6382
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MDPI
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10.3390/antibiotics9120918
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Chiara E. Sabbatini, Giulia Pullano, Laura Di Domenico, Stefania Rubrichi, Shweta Bansal, Vittoria Colizza
Published in:
BMC Infectious Diseases, Issue 24, Article number: 21, 2024, ISSN 1471-2334
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Nature Sciences Report, Issue 20452322, 2022, ISSN 2045-2322
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Science, Issue 369/6510, 2020, Page(s) 1465-1470, ISSN 0036-8075
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American Association for the Advancement of Science
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Nature Communications, Issue 12/1, 2021, ISSN 2041-1723
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Published in:
The Lancet Infectious Diseases, Issue Volume 22, Issue 7, 2022, Page(s) 977-989, ISSN 1473-3099
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The Lancet Publishing Group
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BMC Public Health, Issue 23, Article number: 1488, 2023, ISSN 1471-2458
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Nature Communications, 2022, ISSN 2041-1723
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Nature Publishing Group
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Published in:
Viruses, Issue 15(1), 35, 2023, ISSN 1999-4915
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Multidisciplinary Digital Publishing Institute (MDPI)
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Published in:
PLos Negl Trop Dis, Issue 16(1), 2022, Page(s) e0010075, ISSN 1935-2735
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PLOS
DOI:
10.1371/journal.pntd.0010075
Author(s):
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Published in:
eLife, Issue 11:e71703, 2022, ISSN 2050-084X
Publisher:
eLife Sciences Publications
DOI:
10.7554/elife.71703
Author(s):
Giovanni Marini, Valentina Tagliapietra, Fabiana Cristofolini, Antonella Cristofori, Francesca Dagostin, Maria Grazia Zuccali, Silvia Molinaro, Elena Gottardini & Annapaola Rizzoli
Published in:
Nature Scientific Reports, Issue 13, 8262 (2023), 2023, ISSN 2045-2322
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Nature Publishing Group
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10.1038/s41598-023-35478-w
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Published in:
The Lancet Regional Health - Europe, Issue Volume 28, 2023, ISSN 0140-6736
Publisher:
The Lancet Publishing Group
DOI:
10.1016/j.lanepe.2023.100614
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Nature aging, Issue 3, 2023, Page(s) 722–733, ISSN 2662-8465
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10.1038/s43587-023-00421-1
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International Journal of Health Geographics, Issue 20, Article number: 29 (2021), 2021, ISSN 1476-072X
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BioMed Central
DOI:
10.1186/s12942-021-00281-1
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Published in:
BMC Medicine, Issue 18/1, 2020, ISSN 1741-7015
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Published in:
PLOS Global Public Health, Issue 3(2): e0001305, 2023, ISSN 2767-3375
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