Atlantic ECOsystems assessment, forecasting & sustainability

Livrables

Dataset of ocean reanalysis and hindcast simulation version 2

Dataset of ocean reanalysis and hindcast simulation at 1⁄4 and 1/16 degrees resolution for the Atlantic Ocean based on version 1 and with the addition of data for the Southern Benguela

Dataset of ocean reanalysis and hindcast simulation version 1

Dataset of ocean reanalysis and hindcast simulation at 1⁄4 and 1/16 degrees resolution for the Atlantic Ocean.

AtlantECO-MAPS 1

Spatial maps of ecosystem community structure/networks, and functional traits and genomics from existing observations.

AtlantECO-BASE 1

Spatial maps of microbiome, plastics and the plastisphere, including where applicable, presence-absence, abundance, biovolumes and biomass based on existing obs. p-a, ab

AtlantECO communication plan

A detailed strategy for the communication activities including description of branding channels and tools for communication targeted audiences and communication campaigns schedule and objectives

Reference catalogue of network reconstruction methods

This report will be accompanied by a Github package of statistical methods and machine learning computation pipelines for network construction and the reference database of known microbiome ecological interactions

Report on the All-Atlantic interactome

This report will be accompanied by a software package on the integration of network analytical techniques.

AtlantECO Handbook of Standards and Best Practices Version 2

Update on version 1, the document provides standards and best practices developed in Task 4.1 about sampling protocols, biobanking, ABS compliance and sample analysis protocols. Each version will be published in open access at Zenodo.

Report on advanced observations version 1

This deliverable reports on AtlantECO’s initial sampling activities carried out in Task 4.2, including a detailed inventory of all samples collected, a summary of analyses performed to date, and links to all data sets deposited in open access.

AtlantECO Handbook of Standards and Best Practices Version 1

This deliverable provides standards and best practices developed in Task 41 about sampling protocols biobanking ABS compliance and sample analysis protocols Version 1 of this deliverable will be available on month 6 in time for WP9 to train partners and stakeholders involved in AtlantECOs sampling activities

Project Management Handbook

A description of project management processes and procedures including progress monitoring risk monitoring meeting and teleconferences schedules communication channels and tools and governance structure

AtlantECO environmental responsibility

A document describing the expected collective policies actions and behaviours to ensure responsibility of the consortium towards limiting environmental impact

AtlantECO Communication kit

Standard brand material including project introductory video template presentation poster flyers available in digital and print formats

AtlantECO Data Management Plan

Data Management Plan to be implemented and continuously updated throughout the project duration

Publications

Ultra‐Oligotrophic Waters Expansion in the North Atlantic Subtropical Gyre Revealed by 21 Years of Satellite Observations

Auteurs: Leonelli, F. E.; Bellacicco, M.; Pitarch, J.; Organelli, E.; Nardelli B, Buongiorno; de Toma, V.; Cammarota, C.; Marullo, S; Null,; Santoleri, R.
Publié dans: Geophysical research letters, 2022, ISSN 0094-8276
Éditeur: American Geophysical Union
DOI: 10.1029/2021gl096965

Extreme and compound ocean events are key drivers of projected low pelagic fish biomass

Auteurs: Natacha Le Grix, William L. Cheung, Gabriel Reygondeau, Jakob Zscheischler, Thomas L. Frölicher
Publié dans: Global Change Biology, 2023, ISSN 1365-2486
Éditeur: Wiley-Blackwell
DOI: 10.1111/gcb.16968

Mistaking plastic for zooplankton: Risk assessment of plastic ingestion in the Mediterranean sea

Auteurs: S. Fabri-Ruiz, A. Baudena, F. Moullec, F. Lombard, J.-O. Irisson, M.L. Pedrotti
Publié dans: Science of the total environment, 2023, ISSN 0048-9697
Éditeur: Elsevier BV
DOI: 10.1016/j.scitotenv.2022.159011

Global biogeography of the smallest plankton across ocean depths

Auteurs: Pedro C. Junger; Hugo Sarmento; Caterina. R. Giner; Mireia Mestre; Marta Sebastián; Xosé Anxelu G. Morán; Javier Arístegui; Susana Agustí; Carlos M. Duarte; Silvia G. Acinas; Ramon Massana; Josep M. Gasol; Ramiro Logares
Publié dans: Science advances, 2023, ISSN 2375-2548
Éditeur: American Association for the Advancement of Science
DOI: 10.1126/sciadv.adg9763

Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean

Auteurs: Marta Royo-Llonch, Pablo Sánchez, Clara Ruiz-González, Guillem Salazar, Carlos Pedrós-Alió, Marta Sebastián, Karine Labadie, Lucas Paoli, Federico M. Ibarbalz, Lucie Zinger, Benjamin Churcheward, Tara Oceans Coordinators, Samuel Chaffron, Damien Eveillard, Eric Karsenti, Shinichi Sunagawa, Patrick Wincker, Lee Karp-Boss, Chris Bowler & Silvia G. Acinas
Publié dans: nature microbiology, 2021, ISSN 2058-5276
Éditeur: Nature Publishing Group
DOI: 10.1038/s41564-021-00979-9

Compound marine heatwaves and ocean acidity extremes

Auteurs: Burger, F.A., Terhaar, J. & Frölicher, T.L.
Publié dans: nature communications, 2022, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-022-32120-7

Organization of planktonic Tintinnina assemblages in the Atlantic Ocean

Auteurs: Haibo Li; Glen A. Tarran; Giorgio Dall’Olmo; Andrew P. Rees; Michel Denis; Chaofeng Wang; Gérald Grégori; Yi Dong; Yuan Zhao; Wuchang Zhang; Tian Xiao
Publié dans: Frontiers in Marine Science, 2023, ISSN 2296-7745
Éditeur: Frontiers Media S.A.
DOI: 10.3389/fmars.2023.1082495

Monitoring and modelling marine zooplankton in a changing climate

Auteurs: Lavenia Ratnarajah, Rana Abu-Alhaija, Angus Atkinson, Sonia Batten, Nicholas J. Bax, Kim S. Bernard, Gabrielle Canonico, Astrid Cornils, Jason D. Everett, Maria Grigoratou, Nurul Huda Ahmad Ishak, David Johns, Fabien Lombard, Erik Muxagata, Clare Ostle, Sophie Pitois, Anthony J. Richardson, Katrin Schmidt, Lars Stemmann, Kerrie M. Swadling, Guang Yang & Lidia Yebra
Publié dans: nature communications, 2023, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-023-36241-5

Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems

Auteurs: Lombard, Fabien; Bourdin, Guillaume; Pesant, Stéphane; Agostini, Sylvain; Baudena, Alberto; Boissin, Emilie; Cassar, Nicolas; Clampitt, Megan; Conan, Pascal; Da Silva, Ophélie; Dimier, Céline; Douville, Eric; Elineau, Amanda; Fin, Jonathan; Flores, J. Michel; Ghiglione, Jean-François; Hume, Benjamin C.C.; Jalabert, Laetitia; John, Seth G.; Kelly, Rachel L.; Sunagawa, Shinichi; et al.
Publié dans: Scientific Data, 2023, ISSN 2052-4463
Éditeur: Nature Publishing Group
DOI: 10.1038/s41597-022-01757-w

Food web aggregation: effects on key positions

Auteurs: Giacomuzzo, E., Jordán, F.
Publié dans: Oikos, 2021, ISSN 1600-0706
Éditeur: Wiley-Blackwell
DOI: 10.1111/oik.08541

The land-sea breeze influences the oceanography of the southern Benguela upwelling system at multiple time-scales

Auteurs: Giles Fearon; Steven Herbette; Gildas Cambon; Jennifer Veitch; Jan-Olaf Meynecke; Marcello Vichi
Publié dans: Frontiers in Marine Science, 2023, ISSN 2296-7745
Éditeur: Frontiers Media S.A.
DOI: 10.3389/fmars.2023.1186069

Disentangling marine microbial networks across space

Auteurs: Ina M. Deutschmann; Josep M. Gasol; Josep M. Gasol; Damien Eveillard; Samuel Chaffron; Ramiro Logares; Erwan Delage; Caterina R. Giner; Marta Sebastián; Julie Poulain; Javier Arístegui; Carlos M. Duarte; Silvia G. Acinas; Ramon Massana
Publié dans: nature communications, 2024, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-023-44550-y

Potential Predictability of the Spring Bloom in the Southern Ocean Sea Ice Zone

Auteurs: Benjamin Buchovecky, Graeme A. MacGilchrist, Mitchell Bushuk, F. Alexander Haumann, Thomas L. Frölicher, Natacha Le Grix, John Dunne
Publié dans: Geophysical Research letters, 2023, ISSN 0094-8276
Éditeur: American Geophysical Union
DOI: 10.1029/2023gl105139

The influence of the land–sea breeze on coastal upwelling systems: locally forced vs internal wave vertical mixing and implications for thermal fronts

Auteurs: Giles Fearon, Steven Herbette, Jennifer Veitch, Gildas Cambon, Marcello Vichi
Publié dans: Ocean Modelling, 2022, ISSN 1463-5003
Éditeur: Elsevier BV
DOI: 10.1016/j.ocemod.2022.102069

Ocean Lagrangian Trajectories (OLTraj): Lagrangian analysis for non-expert users

Auteurs: Giorgio Dall'Olmo; Francesco Nencioli; Thomas Jackson; Robert J. W. Brewin; John A. Gittings; Dionysios E. Raitsos
Publié dans: Open Research Europe, 2021, ISSN 2732-5121
Éditeur: F1000 Research Limited
DOI: 10.12688/openreseurope.14133.1

Efficient biological carbon export to the mesopelagic ocean induced by submesoscale fronts

Auteurs: Mingxian Guo, Xiaogang Xing, Peng Xiu, Giorgio Dall’Olmo, Weifang Chen & Fei Chai
Publié dans: nature communications, 2024, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-024-44846-7

The European Nucleotide Archive in 2021.

Auteurs: Carla Cummins; Alisha Ahamed; Raheela Aslam; Josephine Burgin; Rajkumar Devraj; Ossama Edbali; Dipayan Gupta; Peter W. Harrison; Muhammad Haseeb; Sam Holt; Talal Ibrahim; Eugene Ivanov; Suran Jayathilaka; Vishnukumar Balavenkataraman Kadhirvelu; Simon Kay; Manish Kumar; Ankur Lathi; Rasko Leinonen; Fábio Madeira; Nandana Madhusoodanan; Milena Mansurova; Colman O’Cathail; Matt Pearce; Stephane P
Publié dans: Nucleic Acids Research, 2022, ISSN 1362-4962
Éditeur: Oxford University press
DOI: 10.1093/nar/gkab1051

Historical and future maximum sea surface temperatures

Auteurs: B. B. CAEL, FRIEDRICH A. BURGER, STEPHANIE A. HENSON, GREGORY L. BRITTEN, AND THOMAS L. FRÖLICHER
Publié dans: Science Advances, 2024, ISSN 2375-2548
Éditeur: American Association for the Advancement of science
DOI: 10.1126/sciadv.adj5569

Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean

Auteurs: Corentin Hochart; Lucas Paoli; Hans-Joachim Ruscheweyh; Guillem Salazar; Emilie Boissin; Sarah Romac; Julie Poulain; Guillaume Bourdin; Guillaume Iwankow; Clémentine Moulin; Maren Ziegler; Barbara Porro; Eric J. Armstrong; Benjamin C. C. Hume; Jean-Marc Aury; Claudia Pogoreutz; David A. Paz-García; Maggy M. Nugues; Sylvain Agostini; Bernard Banaigs; Emmanuel Boss; Chris Bowler; Colomban de Varga
Publié dans: Nature Communications, 2023, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-023-38502-9

Exploration of marine phytoplankton: from their historical appreciation to the omics era

Auteurs: Juan Jose Pierella Karlusich, Federico M Ibarbalz, Chris Bowler
Publié dans: Journal of Plankton Research, 2020, ISSN 0142-7873
Éditeur: Oxford University Press
DOI: 10.1093/plankt/fbaa049

Including filter-feeding gelatinous macrozooplankton in a global marine biogeochemical model: model–data comparison and impact on the ocean carbon cycle

Auteurs: Clerc, C., Bopp, L., Benedetti, F., Vogt, M., and Aumont, O
Publié dans: Biogeosciences, 2023, ISSN 1726-4189
Éditeur: Copernicus
DOI: 10.5194/bg-20-869-2023

Compound high-temperature and low-chlorophyll extremes in the ocean over the satellite period

Auteurs: Le Grix, Natacha; Zscheischler, Jakob; Laufkötter, Charlotte; Rousseaux, Cecile S.; Frölicher, Thomas L.
Publié dans: Biogeosciences, 2021, ISSN 1726-4189
Éditeur: Copernicus
DOI: 10.5194/bg-18-2119-2021

Drivers of Surface Ocean Acidity Extremes in an Earth System Model

Auteurs: Friedrich A. Burger, Thomas L. Frölicher
Publié dans: Global Biogeochemical Cycles, 2023, ISSN 0886-6236
Éditeur: American Geophysical Union
DOI: 10.1029/2023gb007785

Analysis of a coastal-trapped wave generated by the 2016 extra-tropical cyclonic system in the Southern Brazilian continental shelf with COAWST modeling system

Auteurs: Luis Felipe Ferreira de Mendonça, Antônio Fernando Harter Fetter-Filho, Mauro Michelena Andrade, Fabricio Sanguinetti Cruz de Oliveira, Douglas da Silva Lindemann, Rose Ane Pereira de Freitas, Rafael Afonso do Nascimento Reis, Carlos Alessandre Domingos Lentini, Claudia Klose Parise, Daniel Caetano Santos
Publié dans: Journal of South American Earth Sciences, 2023, ISSN 0895-9811
Éditeur: Earth Sciences and Resources Institute
DOI: 10.1016/j.jsames.2023.104522

Process controlling iron–manganese regulation of the Southern Ocean biological carbon pump

Auteurs: Prima Anugerahanti; Alessandro Tagliabue
Publié dans: Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, 2023, ISSN 1364-503X
Éditeur: Royal Society of London
DOI: 10.1098/rsta.2022.0065

Ocean-wide comparisons of mesopelagic planktonic community structures

Auteurs: Rigonato, Janaina; Budinich, Marko; Murillo, Alejandro A.; Brandão, Manoela C.; Pierella Karlusich, Juan J.; Soviadan, Yawouvi Dodji; Gregory, Ann C.; Endo, Hisashi; Kokoszka, Florian; Vik, Dean; Henry, Nicolas; Frémont, Paul; Labadie, Karine; Zayed, Ahmed A.; Dimier, Céline; Picheral, Marc; Searson, Sarah; Poulain, Julie; Kandels, Stefanie; Pesant, Stéphane; Sunagawa, Shinichi; et al.
Publié dans: ISME Communications, 2023, ISSN 2730-6151
Éditeur: Springer Nature
DOI: 10.1038/s43705-023-00279-9

Century-scale carbon sequestration flux throughout the ocean by the biological pump

Auteurs: Florian Ricour, Lionel Guidi, Marion Gehlen, Timothy DeVries, Louis Legendre
Publié dans: nature geoscience, 2023, ISSN 1752-0894
Éditeur: Nature Publishing Group
DOI: 10.1038/s41561-023-01318-9

Priorities for ocean microbiome research

Auteurs: Tara Ocean Foundation; Tara Oceans Consortium; European Molecular Biology Laboratory (EMBL); European Marine Biological Resource Centre - European Research Infrastructure Consortium (EMBRC-ERIC); Acinas, Silvia G.
Publié dans: nature microbiology, 2022, ISSN 2058-5276
Éditeur: Nature portfolio
DOI: 10.1038/s41564-022-01145-5

Basin-Scale Underway Quantitative Survey of Surface Microplankton Using Affordable Collection and Imaging Tools Deployed From Tara

Auteurs: Zoé Mériguet; Anna Oddone; David Le Guen; Thibaut Pollina; Romain Bazile; Clémentine Moulin; Romain Troublé; Manu Prakash; Colomban de Vargas; Fabien Lombard
Publié dans: Frontiers in Marine Science, 2022, ISSN 2296-7745
Éditeur: Frontiers Media S.A.
DOI: 10.3389/fmars.2022.916025

Major restructuring of marine plankton assemblages under global warming

Auteurs: Fabio Benedetti, Meike Vogt, Urs Hofmann Elizondo, Damiano Righetti, Niklaus E. Zimmermann & Nicolas Gruber
Publié dans: nature communications, 2021, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-021-25385-x

Who Is Where in Marine Food Webs? A Trait-Based Analysis of Network Positions

Auteurs: Anett Endrédi; Anett Endrédi; Katalin Patonai; Katalin Patonai; János Podani; Simone Libralato; Ferenc Jordán; Ferenc Jordán
Publié dans: Frontiers in Marine Science, 2021, ISSN 2296-7745
Éditeur: Frontiers Media S.A.
DOI: 10.3389/fmars.2021.636042

Integrating environmental variability to broaden the research on coral responses to future ocean conditions

Auteurs: Maren Ziegler; Maren Ziegler; Andrea Anton; Andrea Anton; Shannon G. Klein; Nils Rädecker; Nils Rädecker; Nils Rädecker; Nathan R. Geraldi; Sebastian Schmidt-Roach; Vincent Saderne; Peter J. Mumby; Maha J. Cziesielski; Cecilia Martin; Thomas L. Frölicher; Thomas L. Frölicher; John M. Pandolfi; David J. Suggett; Manuel Aranda; Carlos M. Duarte; Christian R. Voolstra; Christian R. Voolstra
Publié dans: Global Change Biology, 2021, ISSN 1365-2486
Éditeur: Wiley-Blackwell
DOI: 10.1111/gcb.15840

Computing marine plankton connectivity under thermal constraints

Auteurs: Manral, Darshika; Iovino, Doroteaciro; Jaillon, Olivier; Masina, Simona; Sarmento, Hugo; Iudicone, Daniele; Amaral-Zettler, Linda; van Sebille, Erik; Sub Physical Oceanography; Marine and Atmospheric Research
Publié dans: Frontiers in Marine Science, 2023, ISSN 2296-7745
Éditeur: Frontiers Media Ltd
DOI: 10.3389/fmars.2023.1066050

Reinterpreting two regime shifts in North Sea plankton communities through the lens of functional traits

Auteurs: Nicolas Djeghri, Aurélien Boyé, Clare Ostle, Pierre Hélaouët
Publié dans: Global Ecology and Biogeography, 2023, ISSN 1466-822X
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/geb.13659

Global gradients in species richness of marine plankton functional groups

Auteurs: Fabio Benedetti, Nicolas Gruber, Meike Vogt
Publié dans: Journal of Plankton Research, 2023, ISSN 0142-7873
Éditeur: Oxford University Press
DOI: 10.1093/plankt/fbad044

Copepod functional traits and groups show divergent biogeographies in the global ocean

Auteurs: Fabio Benedetti; Jonas Wydler; Meike Vogt
Publié dans: Journal of Biogeography, 2022, ISSN 0305-0270
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/jbi.14512

Toward a Global Public Repository of Community Protocols to Encourage Best Practices in Biomolecular Ocean Observing and Research

Auteurs: Robyn M. Samuel, Raissa Meyer, Pier Luigi Buttigieg, Neil Davies, Nicholas W. Jeffery, Christopher Meyer, Christina Pavloudi, Kathleen Johnson Pitz, Maxime Sweetlove, Susanna Theroux, Jodie van de Kamp and Alison Watts
Publié dans: Frontiers in Marine Science, 2021, ISSN 2296-7745
Éditeur: Frontiers Media S.A.
DOI: 10.3389/fmars.2021.758694

Metocean Modulators of the First Recorded South Atlantic Hurricane: Catarina

Auteurs: Gustavo Lauton, Martinho Marta-Almeida, Geoff S. Dorfschäfer, Carlos A. D. Lentini
Publié dans: Geophysical Research Letters, 2021, ISSN 1944-8007
Éditeur: Wiley-Blackwell
DOI: 10.1029/2020gl091416

Environmental vulnerability of the global ocean plankton community interactome

Auteurs: Samuel Chaffron; Erwan Delage; Marko Budinich; Damien Vintache; Nelly Henry; Charlotte Nef; Mathieu Ardyna; Mathieu Ardyna; Ahmed A. Zayed; Pedro C. Junger; Pierre E. Galand; Connie Lovejoy; Alison E. Murray; Hugo Sarmento; Silvia G. Acinas; Marcel Babin; Marcel Babin; Daniele Iudicone; Olivier Jaillon; Eric Karsenti; Patrick Wincker; Lee Karp-Boss; Matthew B. Sullivan; Chris Bowler; C. de Vargas;
Publié dans: Science Advances, 2021, ISSN 2375-2548
Éditeur: American Association for the Advancement of science
DOI: 10.1126/sciadv.abg1921

Evaluation of the CMCC global eddying ocean model for the Ocean Model Intercomparison Project (OMIP2)

Auteurs: Doroteaciro Iovino; Pier Giuseppe Fogli; Simona Masina
Publié dans: Geoscientific Model Development, 2023, ISSN 1991-959X
Éditeur: Copernicus Gesellschaft mbH
DOI: 10.5194/gmd-16-6127-2023

Macroscale patterns of oceanic zooplankton composition and size structure

Auteurs: Manoela C. Brandão, Fabio Benedetti, Séverine Martini, Yawouvi Dodji Soviadan, Jean-Olivier Irisson, Jean-Baptiste Romagnan, Amanda Elineau, Corinne Desnos, Laëtitia Jalabert, Andrea S. Freire, Marc Picheral, Lionel Guidi, Gabriel Gorsky, Chris Bowler, Lee Karp-Boss, Nicolas Henry, Colomban de Vargas, Matthew B. Sullivan, Tara Oceans Consortium Coordinators, Lars Stemmann & Fabien Lombard
Publié dans: Scientific Reports, 2021, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-021-94615-5

Restructuring of plankton genomic biogeography in the surface ocean under climate change

Auteurs: Frémont, P., Gehlen, M., Vrac, M., Leconte, J., Delmont, T. O., Wincker, P., Iudicone, D.and Jaillon, O.
Publié dans: Nature Climate Change, 2022, ISSN 1758-6798
Éditeur: Springer Nature Limited
DOI: 10.1038/s41558-022-01314-8

Spatial and temporal variability of mode-1 and mode-2 internal solitary waves from MODIS/TERRA sunglint off the Amazon shelf

Auteurs: Carina Regina de Macedo; Ariane Koch-Larrouy; José Carlos Bastos da Silva; Jorge Manuel Magalhães; Carlos Alessandre Domingos Lentini; Trung Kien Tran; Marcelo Caetano Barreto Rosa; Vincent Vantrepotte
Publié dans: Ocean Science, 2023, ISSN 1812-0784
Éditeur: Copernicus Gesellschaften
DOI: 10.5194/os-19-1357-2023

The Effect of Currents on Large Surface Gravity Waves Under Cyclonic Conditions in the South/Southeastern Brazil

Auteurs: Gustavo Lauton, Martinho Marta-Almeida, Carlos A. D. Lentini
Publié dans: Journal of Geophysical Research: Oceans, 2023, ISSN 2169-9275
Éditeur: Wiley-Blackwell
DOI: 10.1029/2022jc018472

The impact of zooplankton calcifiers on the marine carbon cycle

Auteurs: Nielja S. Knecht; Fabio Benedetti; Urs Hofmann Elizondo; Nina Bednaršek; Sonia Chaabane; Catharina de Weerd; Katja T. C. A. Peijnenburg; Ralf Schiebel; Meike Vogt
Publié dans: Global Biogeochemical Cycles, 2023, ISSN 0886-6236
Éditeur: American Geophysical Union
DOI: 10.1029/2022gb007685

Phytoplankton life strategies, phenological shifts and climate change in the North Atlantic Ocean from 1850 to 2100

Auteurs: Loïck Kléparski, Grégory Beaugrand, Martin Edwards, Clare Ostle
Publié dans: Global Change Biology, 2023, ISSN 1365-2486
Éditeur: Wiley-Blackwell
DOI: 10.1111/gcb.16709

Local drivers of marine heatwaves: A global analysis with an Earth system model

Auteurs: Linus Vogt; Friedrich Burger; Stephen Griffies; Thomas Frölicher
Publié dans: Frontiers in Climate, 2022, ISSN 2624-9553
Éditeur: Frontiers Media S.A
DOI: 10.3389/fclim.2022.847995

A network-based measure of functional diversity in food webs

Auteurs: Lin Wen-hsien, Lai Shu-mei, Davis Andrew J., Liu Wei-chung and Jordán Ferenc
Publié dans: Biology Letters, 2022, ISSN 1744-9561
Éditeur: The Royal Society
DOI: 10.1098/rsbl.2022.0183

Contribution of genome-scale metabolic modelling to niche theory

Auteurs: Antoine Régimbeau, Marko Budinich, Abdelhalim Larhlimi, Juan José Pierella Karlusich, Olivier Aumont, Laurent Memery, Chris Bowler, Damien Eveillard
Publié dans: Ecology Letters, 2022, Page(s) 1352-1364, ISSN 1461-0248
Éditeur: Wiley-Blackwell
DOI: 10.1111/ele.13954

Genomic adaptation of giant viruses in polar oceans

Auteurs: Lingjie Meng; Tom O. Delmont; Morgan Gaïa; Eric Pelletier; Antonio Fernàndez-Guerra; Samuel Chaffron; Russell Y. Neches; Junyi Wu; Hiroto Kaneko; Hisashi Endo; Hiroyuki Ogata
Publié dans: Nature Communications, 2023, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1101/2023.02.09.527846

Climate-driven variability of the Southern Ocean CO2 sink

Auteurs: N. Mayot, C. Le Quéré, C. Rödenbeck, R. Bernardello, L. Bopp, L. M. Djeutchouang, M. Gehlen, L. Gregor, N. Gruber, J. Hauck, Y. Iida, T. Ilyina, R. F. Keeling, P. Landschützer, A. C. Manning, L. Patara, L. Resplandy, J. Schwinger, R. Séférian, A. J. Watson, R. M. Wright and J. Zeng
Publié dans: Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, 2023, ISSN 1364-503X
Éditeur: Royal Society of London
DOI: 10.1098/rsta.2022.0055

A dataset of Oceanographic and biogeochemical anomalies in the Caribbean Sea

Auteurs: CASALS, R.; VARONA, H. L.; CALZADA, A. E.; LENTINI, C. A. D.; NORIEGA, C.; BORGES, D. M.; LIRA, S. M. A.; SANTANA, C. S. de; ARAUJO, M.; SCHWAMBORN, R.; RODRIGUEZ, A.
Publié dans: Latin America Data in Science, 2022, ISSN 2763-9290
Éditeur: Alex Bager
DOI: 10.53805/lads.v2i1.50

Uncertainties of particulate organic carbon concentrations in the mesopelagic zone of the Atlantic ocean

Auteurs: Paul Strubinger Sandoval; Giorgio Dall'Olmo; Keith Haines; Rafael Rasse; Jelizaveta Ross; Jelizaveta Ross
Publié dans: Open Research Europe, 2021, ISSN 2732-5121
Éditeur: F1000 Research Limited
DOI: 10.12688/openreseurope.13395.1

The European Nucleotide Archive in 2020.

Auteurs: Peter W. Harrison; Alisha Ahamed; Raheela Aslam; Blaise T. F. Alako; Josephine Burgin; Nicola Buso; Mélanie Courtot; Jun Fan; Dipayan Gupta; Muhammad Haseeb; Sam Holt; Talal Ibrahim; Eugene Ivanov; Suran Jayathilaka; Vishnukumar Balavenkataraman Kadhirvelu; Manish Kumar; Rodrigo Lopez; Simon Kay; Rasko Leinonen; Xin Liu; Colman O’Cathail; Amir Pakseresht; Youngmi Park; Stephane Pesant; Nadim Ra
Publié dans: Nucleic Acids Research, 2021, ISSN 1362-4962
Éditeur: Oxford University Press
DOI: 10.1093/nar/gkaa1028

The founding charter of the Omic Biodiversity Observation Network (Omic BON)

Auteurs: Raïssa Meyer, Neil Davies, Kathleen J Pitz, Chris Meyer, Robyn Samuel, Jane Anderson, Ward Appeltans, Katharine Barker, Francisco P Chavez, J Emmett Duffy, Kelly D Goodwin, Maui Hudson, Margaret E Hunter, Johannes Karstensen, Christine M Laney, Margaret Leinen, Paula Mabee, James A Macklin, Frank Muller-Karger, Nicolas Pade, Jay Pearlman, Lori Phillips, Pieter Provoost, Ioulia Santi, Dmitry Schig
Publié dans: GigaScience, 2023, ISSN 2047-217X
Éditeur: Oxford University Press
DOI: 10.1093/gigascience/giad068

At what scale should we assess the health of pelagic habitats? Trade-offs between small-scale manageable pressures and the need for regional upscaling

Auteurs: C.A. Graves, M. Best, A. Atkinson, B. Bear, E. Bresnan, M. Holland, D.G. Johns, M. Machairopoulou, A. McQuatters-Gollop, A. Mellor, C. Ostle, K. Paxman, S. Pitois, P. Tett, M. Devlin
Publié dans: Ecological indicators, 2023, ISSN 1470-160X
Éditeur: Elsevier BV
DOI: 10.1016/j.ecolind.2023.110571

Microbial ecology of the Southern Ocean

Auteurs: Diego J Castillo; Choaro D Dithugoe; Oliver K Bezuidt; Thulani P Makhalanyane
Publié dans: FEMS Microbiology Ecology, 2022, ISSN 1574-6941
Éditeur: Oxford university Press
DOI: 10.1093/femsec/fiac123

Trends in Marine Plankton Biodiversity over the 21st Century under Different Climate Change Scenarios

Auteurs: Li, Xinhang
Publié dans: 2023
Éditeur: ETH Zurich
DOI: 10.3929/ethz-b-000652200

Ecological processes structuring the ocean microbiome across space and time

Auteurs: Junger, Pedro C.
Publié dans: 2023
Éditeur: Universidade Federal de São Carlos CSIC - Instituto de Ciencias del Mar (ICM)

The potential of machine learning algorithms for mapping microplastic concentrations in the global ocean

Auteurs: Poli Giacomo
Publié dans: 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.10245292

Comparing models and observations of the surface accumulation zone of floating plastic in the North Atlantic subtropical gyre

Auteurs: Schmiz, Sophie
Publié dans: 2021
Éditeur: Zenodo
DOI: 10.5281/zenodo.5338790

Editorial: Technological advances for measuring planktonic components of the pelagic ecosystem: An integrated approach to data collection and analysis

Auteurs: Sophie G. Pitois, Elaine S. Fileman, Mark C. Benfield, Peter H. Wiebe, Fabien Lombard
Publié dans: Frontiers in Marine Science, 2023, ISSN 2296-7745
Éditeur: Frontiers Media S.A.
DOI: 10.3389/fmars.2023.1100998

Patterns of mesozooplankton community composition and vertical fluxes in the global ocean

Auteurs: Yawouvi Dodji Soviadan, View ORCID ProfileFabio Benedetti, View ORCID ProfileManoela C. Brandão, View ORCID ProfileSakina-Dorothée Ayata, View ORCID ProfileJean-Olivier Irisson, View ORCID ProfileJean Louis Jamet, Rainer Kiko, Fabien Lombard, Kissao Gnandi, Lars Stemmann
Publié dans: Progress in Oceanography, 2022, ISSN 0079-6611
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.pocean.2021.102717

Nitrogen fixation rates increase with diazotroph richness in the global ocean

Auteurs: Dominic Eriksson, Nicolas Gruber, Fabio Benedetti, Damiano Righetti, Lucas Paoli, Guillem Salazar, Shinichi Sunagawa, Meike Vogt
Publié dans: ecoevorxiv, 2023
Éditeur: ecoevorxiv
DOI: 10.32942/x2z323

Planktoscope protocol for plankton imaging V.2

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Publié dans: 2023, ISSN 2473-1838
Éditeur: Springer Nature
DOI: 10.17504/protocols.io.bp2l6bq3zgqe/v2

Linking satellites to genes with machine learning to estimate major phytoplankton groups from space

Auteurs: Roy El Hourany, Juan Pierella Karlusich, Lucie Zinger, Hubert Loisel, Marina Levy, and Chris Bowler
Publié dans: EGUsphere, 2022
Éditeur: Copernicus
DOI: 10.5194/egusphere-2022-1421

Mapping global marine biodiversity under sparse data conditions

Auteurs: Damiano Righetti, Meike Vogt, Nicolas Gruber, Niklaus E. Zimmermann
Publié dans: bioRxiv, 2023
Éditeur: bioRxiv
DOI: 10.1101/2023.02.28.530497

The Marine Biodiversity Observation Network Plankton Workshops: Plankton Ecosystem Function, Biodiversity, and Forecasting—Research Requirements and Applications

Auteurs: Grigoratou, Maria; Montes, Enrique; Richardson, Anthony J.; Everett, Jason D.; Acevedo‐Trejos, Esteban; Anderson, Clarissa; Chen, Bingzhang; Guy-Haim, Tamar; Hinners, Jana; Lindemann, Christian; Garcia, Tatiane Martins; Möller, Klas O.; Monteiro, Fanny M.; Neeley, Aimee R.; O'Brien, Todd D.; Palacz, Artur P.; Poulton, Alex J.; Prowe, A.E. Friederike; Rodríguez‐Santiago, Áurea E.; Rousseaux,
Publié dans: Limnology and Oceanography Bulletin, 2022, ISSN 1539-6088
Éditeur: Wiley-Blackwell
DOI: 10.1002/lob.10479

Towards a Global Perspective of the Marine Microbiome

Auteurs: Silvia G. Acinas; Marta Sebastián; Isabel Ferrera
Publié dans: The Marine Microbiome, 2022
Éditeur: Springer Cham
DOI: 10.1007/978-3-030-90383-1_8

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