A Planetary Inventory of Life – a New Synthesis Built on Big Data Combined with Novel Statistical Methods | LIFEPLAN | Project | Results | H2020 | CORDIS

Deliverables

Publications

Spatial memory drives foraging strategies of wolves, but in highly individual ways.

Author(s): Gurarie, E., Bracis, C., Brilliantova, A. Kojola, I., Suutarinen, J., Ovaskainen, O., Potluri, S. and Fagan, W. F.
Published in: Frontiers in Ecology and Evolution, 2022, ISSN 2296-701X
Publisher: Frontiers Media S.A.
DOI: 10.3389/fevo.2022.768478

Differences in spatial versus temporal reaction norms for spring and autumn phenological events

Author(s): Delgado, M., Roslin, T., Tikhonov, G., Meyke, E., Lo, C., Gurarie, E., Abadonova, M., Abduraimov, O., Adrianova, O., Akimova, T., Akkiev, M., Ananin, A., Andreeva, E., Andriychuk, N., Antipin, M., Arzamascev, K., Babina, S., Babushkin, M., Bakin, O., Barabancova, A., Basilskaja, I., Belova, N., Belyaeva, N., Bespalova, T., Bisikalova, E., Bobretsov, A., Bobrov, V., Bobrovskyi, V., Bochkareva, E.,
Published in: PNAS, 2020, ISSN 1091-6490
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.2002713117

Spore production monitoring reveals contrasting seasonal strategies and a trade‐off between spore size and number in wood‐inhabiting fungi

Author(s): Veera Norros; Panu Halme; Anna Norberg; Otso Ovaskainen
Published in: Functional Ecology, Issue 37, 2023, Page(s) 551–563, ISSN 1365-2435
Publisher: John Wiley & Sons Ltd
DOI: 10.1111/1365-2435.14254

A Successful Crowdsourcing Approach for Bird Sound Classification

Author(s): Petteri Lehikoinen; Meeri Rannisto; Ulisses Camargo; Aki Aintila; Patrik Lauha; Esko Piirainen; Panu Somervuo; Otso Ovaskainen
Published in: Citizen Science: Theory and Practice, Issue 8 (1), 2023, Page(s) 16, ISSN 2057-4991
Publisher: Ubiquity Press
DOI: 10.5334/cstp.556

Covariate-Informed Latent Interaction Models: Addressing Geographic & Taxonomic Bias in Predicting Bird–Plant Interactions

Author(s): Georgia Papadogeorgou, Carolina Bello, Otso Ovaskainen, David B. Dunson
Published in: Journal of the American Statistical Association, Issue 118 (544), 2023, Page(s) 2250–2261, ISSN 1537-274X
Publisher: Taylor & Francis Ltd
DOI: 10.1080/01621459.2023.2208390

The role of seasonality in shaping the interactions of honeybees with other taxa

Author(s): Helena Wirta; Mirkka Jones; Pablo Peña‐Aguilera; Camilo Chacón‐Duque; Eero Vesterinen; Otso Ovaskainen; Nerea Abrego; Tomas Roslin
Published in: Ecology and Evolution, Issue Vol 13, Iss 10, 2023, ISSN 2041-210X
Publisher: John Wiley and Sons Inc.
DOI: 10.1002/ece3.10580

Habitat area and local habitat conditions outweigh fragmentation effects on insect communities in vineyards

Author(s): Laura Bosco; Valentin Moser; Mirkka M. Jones; Øystein Opedal; Otso Ovaskainen; Gerber Sonja; Roel Van Klink; Samuel A. Cushman; Raphaël Arlettaz; Alain Jacot
Published in: Ecological Solutions and Evidence, Issue 4 (1), 2023, ISSN 2688-8319
Publisher: John Wiley & Sons Inc.
DOI: 10.1002/2688-8319.12193

Movement of forest‐dependent dung beetles through riparian buffers in Bornean oil palm plantations

Author(s): Gray, Ross E., J.; Rodriguez, Luisa, F.; Lewis, Owen, T.; Chung, Arthur Y., C.; Ovaskainen, Otso; Slade, Eleanor, M.
Published in: Journal of Applied Ecology, Issue 59, 2022, Page(s) 238-250, ISSN 1365-2664
Publisher: British Ecological Society
DOI: 10.1111/1365-2664.14049

FAVIS: Fast and versatile protocol for non-destructive metabarcoding of bulk insect samples

Author(s): Iwaszkiewicz-Eggebrecht, Elzbieta; Lukasik, Piotr; Buczek, Mateusz; Deng, Junchen; Hartop, Emily A.; Prus-Frankowska, Monika; Viteri, Paulina; Andersson, Anders F.; Roslin, Tomas; Tack, Ayco J. M.; Ronquist, Fredrik; Miraldo, Andreia
Published in: PLoS ONE, Issue 18 (7), 2023, ISSN 1932-6203
Publisher: Public Library of Science

Optimizing insect metabarcoding using replicated mock communities.

Author(s): Elzbieta Iwaszkiewicz‐Eggebrecht; Emma Granqvist; Mateusz Buczek; Monika Prus; Jan Kudlicka; Tomas Roslin; Ayco J. M. Tack; Anders F. Andersson; Andreia Miraldo; Fredrik Ronquist; Piotr Łukasik
Published in: Methods in Ecology and Evolution, Issue Vol 14, Iss 4, 2023, Page(s) 1130-1146, ISSN 2041-210X
Publisher: John Wiley and Sons Inc.
DOI: 10.1111/2041-210x.14073

Diverging trends and drivers of Arctic flower production in Greenland over space and time

Author(s): Becker-Scarpitta, Antoine; Antão, Laura H.; Schmidt, Niels Martin; Blanchet, F. Guillaume; Kaarlejärvi, Elina; Raundrup, Katrine; Roslin, Tomas
Published in: Polar Biology, Issue 46, 2023, Page(s) 837-848, ISSN 1432-2056
Publisher: Springer
DOI: 10.1007/s00300-023-03164-2

Climate variability and aridity modulate the role of leaf shelters for arthropods: A global experiment

Author(s): Gustavo Q. Romero,Thiago Gonçalves-Souza,Tomas Roslin,Robert J. Marquis,Nicholas A.C. Marino,Vojtech Novotny,Tatiana Cornelissen,Jerome Orivel,Shen Sui,Gustavo Aires,Reuber Antoniazzi,Wesley Dáttilo,Crasso P. B. Breviglieri,Annika Busse,Heloise Gibb,Thiago J. Izzo,Tomas Kadlec,Victoria Kemp,Monica Kersch-Becker,Michal Knapp,Pavel Kratina,Rebecca Luke,Stefan Majnarić,Robin Maritz,Paulo Mateus Ma
Published in: Global Change Biology, 2022, ISSN 1365-2486
Publisher: Wiley-Blackwell
DOI: 10.1111/gcb.16150

Snow depth drives habitat selection by overwintering birds in built‐up areas, farmlands and forests

Author(s): Purabi Deshpande; Aleksi Lehikoinen; Rose Thorogood; Petteri Lehikoinen
Published in: Journal of Biogeography, Issue 4, 2022, Page(s) 630-639, ISSN 0305-0270
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/jbi.14326

Evaluation of non-destructive DNA extraction protocols for insect metabarcoding: gentler and shorter is better

Author(s): Marquina, Daniel; Roslin, Tomas; Łukasik, Piotr; Ronquist, Fredrik
Published in: Metabarcoding and Metagenomics 6: e78871, 2022, Page(s) 187–201, ISSN 2534-9708
Publisher: Pensoft Publishers
DOI: 10.3897/mbmg.6.78871

Recommendations for quantitative uncertainty consideration in ecology and evolution

Author(s): Emily G. Simmonds; Kwaku P. Adjei; Benjamin Cretois; Lisa Dickel; Ricardo González-Gil; Jack H. Laverick; Caitlin P. Mandeville; Elizabeth G. Mandeville; Otso Ovaskainen; Jorge Sicacha-Parada; Emma S. Skarstein; Bob O'Hara
Published in: Trends in Ecology and Evolution, Issue Volume 39, ISSUE 4, 2023, Page(s) 328-337, ISSN 1872-8383
Publisher: Cell Press
DOI: 10.1016/j.tree.2023.10.012

Site-specific length-biomass relationships of arctic arthropod families are critical for accurate ecological inferences

Author(s): Versluijs TSL, Zhemchuzhnikov MK, Kutcherov D, Roslin T, Martin Schmidt N, van Gils JA, Reneerkens J
Published in: PeerJ, Issue 11, 2023, ISSN 2167-8359
Publisher: PeerJ
DOI: 10.7717/peerj.15943

Domain‐specific neural networks improve automated bird sound recognition already with small amount of local data

Author(s): Patrik Lauha; Panu Somervuo; Petteri Lehikoinen; Lisa Geres; Tobias Richter; Sebastian Seibold; Otso Ovaskainen
Published in: Methods in Ecology and Evolution, Issue 13 (12), 2022, Page(s) 2799–2810, ISSN 2041-210X
Publisher: John Wiley and Sons Inc.
DOI: 10.1111/2041-210x.14003

Spatial predictions on physically constrained domains: Applications to Arctic sea salinity data

Author(s): Jin, Bora; Herring, Amy H.; Dunson, David
Published in: The Annals of Applied Statistics, Issue VOL. 18, NO. 2, 2024, Page(s) 1596-1617, ISSN 1932-6157
Publisher: Institute of Mathematical Statistics
DOI: 10.48550/arxiv.2210.03913

Stable pollination service in a generalist high Arctic community despite the warming climate

Author(s): Cirtwill, Alyssa R; Kaartinen, Riikka; Rasmussen, Claus; Redr, Deanne; Wirta, Helena; Olesen, Jens M; Tiusanen, Mikko; Ballantyne, Gavin; Cunnold, Helen; Stone, Graham N; Schmidt, Niels Martin; Roslin, Tomas
Published in: Ecological Monographs, Issue Volume 93, Issue 1, 2022, ISSN 1557-7015
Publisher: Wiley Periodicals LLC
DOI: 10.1002/ecm.1551

Dimension-Grouped Mixed Membership Models for Multivariate Categorical Data

Author(s): Gu, Yuqi; Erosheva, Elena A.; Xu, Gongjun; Dunson, David B.
Published in: Journal of Machine Learning Research, Issue 24 (88), 2023, Page(s) 1-49, ISSN 1532-4435
Publisher: MIT Press

Bayesian semiparametric long memory models for discretized event data

Author(s): Antik Chakraborty, Otso Ovaskainen, David B. Dunson
Published in: The Annals of Applied Statistics, Issue 16 (3), 2022, Page(s) 1380 - 1399, ISSN 1932-6157
Publisher: Institute of Mathematical Statistics
DOI: 10.1214/21-aoas1546

Reconstructing the ecosystem context of a species: Honey-borne DNA reveals the roles of the honeybee

Author(s): Helena Kristiina Wirta; Mohammad Bahram; Kirsten Miller; Tomas Roslin; Eero Vesterinen
Published in: PLoS ONE, Issue Vol 17, Iss 7, 2022, Page(s) p e0268250, ISSN 1932-6203
Publisher: Public Library of Science
DOI: 10.1371/journal.pone.0268250

Consistent imprints of elevation, soil temperature and moisture on plant and arthropod communities across two subarctic landscapes

Author(s): Pablo Peña-Aguilera, Niels M. Schmidt, Lærke Stewart, Bastien Parisy, René van der Wal, Ly Lindman, Eero J. Vesterinen, Ilya M. D. Maclean, Tuomas Kankaanpää, Helena Wirta, Tomas Roslin
Published in: Insect Conservation and Diversity, Issue 16 (5), 2023, Page(s) 684–700, ISSN 1752-4598
Publisher: Wiley
DOI: 10.1111/icad.12667

High‐resolution <scp>3D</scp> forest structure explains ecomorphological trait variation in assemblages of saproxylic beetles

Author(s): Lukas Drag; Ryan C. Burner; Jörg G. Stephan; Tone Birkemoe; Inken Doerfler; Martin M. Gossner; Paul Magdon; Otso Ovaskainen; Mária Potterf; Peter Schall; Tord Snäll; Anne Sverdrup‐Thygeson; Wolfgang Weisser; Jörg Müller
Published in: Functional Ecology, Issue 37 (1), 2023, Page(s) 150–161, ISSN 1365-2435
Publisher: John Wiley & Sons Ltd
DOI: 10.1111/1365-2435.14188

Evaluating the predictive performance of presence–absence models: Why can the same model appear excellent or poor?

Author(s): Nerea Abrego; Otso Ovaskainen
Published in: Ecology and Evolution, Issue 13 (12), 2023, ISSN 2045-7758
Publisher: John Wiley and Sons Ltd
DOI: 10.1002/ece3.10784

Phenological shifts of abiotic events, producers and consumers across a continent

Author(s): Tomas Roslin, Laura Antão, Maria Hällfors, Evgeniy Meyke, Coong Lo, Gleb Tikhonov, Maria del Mar Delgado, Eliezer Gurarie, Marina Abadonova, Ozodbek Abduraimov, Olga Adrianova, Tatiana Akimova, Muzhigit Akkiev, Aleksandr Ananin, Elena Andreeva, Natalia Andriychuk, Maxim Antipin, Konstantin Arzamascev, Svetlana Babina, Miroslav Babushkin, Oleg Bakin, Anna Barabancova, Inna Basilskaja, Nina Belova
Published in: Nature Climate Change, 2021, ISSN 1758-678X
Publisher: Nature Publishing Group
DOI: 10.1038/s41558-020-00967-7

Ecological signals of arctic plant-microbe associations are consistent across eDNA and vegetation surveys

Author(s): Bastien Parisy; Niels M. Schmidt; Helena Wirta; Laerke Stewart; Loic Pellissier; William E. Holben; Sam Pannoni; Panu Somervuo; Mirkka M. Jones; Jukka Siren; Eero Vesterinen; Otso Ovaskainen; Tomas Roslin
Published in: Metabarcoding and Metagenomics, Issue 7, 2023, Page(s) 155-193, ISSN 2534-9708
Publisher: Pensoft Publishers
DOI: 10.3897/mbmg.7.99979

Connecting the multiple dimensions of global soil fungal diversity

Author(s): Vladimir Mikryukov; Olesya Dulya; Alexander Zizka; Mohammad Bahram; Niloufar Hagh-Doust; Sten Anslan; Oleh Prylutskyi; Manuel Delgado-Baquerizo; Fernando T. Maestre; Henrik Nilsson; Jaan Pärn; Maarja Öpik; Mari Moora; Martin Zobel; Mikk Espenberg; Ülo Mander; Abdul Nasir Khalid; Adriana Corrales; Ahto Agan; Aída-M. Vasco-Palacios; Alessandro Saitta; Andrea Rinaldi; Annemieke Verbeken; Bobby Su
Published in: Science Advances, Issue Vol 9, Issue 48, 2023, ISSN 2375-2548
Publisher: Science
DOI: 10.1126/sciadv.adj8016

What makes a good pollinator? Abundant and specialised insects with long flight periods transport the most strawberry pollen

Author(s): Villa-Galaviz, E., Cirtwill, A. R., Gibson, R., Timberlake, T., Roslin, T., & Memmott, J.
Published in: Ecological Solutions and Evidence, Issue 4 (3), 2023, ISSN 2688-8319
Publisher: John Wiley & Sons Ltd
DOI: 10.1002/2688-8319.12253

A Joint MLE Approach to Large-Scale Structured Latent Attribute Analysis

Author(s): Yuqi Gu; Gongjun Xu
Published in: Journal of the American Statistical Association, Issue 2, 2021, ISSN 0162-1459
Publisher: American Statistical Association
DOI: 10.1080/01621459.2021.1955689

Food webs coupled in space: Consumer foraging movement affects both stocks and fluxes

Author(s): Kate L. Wootton; Alva Curtsdotter; Riccardo Bommarco; Tomas Roslin; Tomas Jonsson
Published in: Ecology, Issue 104 (8), 2023, ISSN 0012-9658
Publisher: Ecological Society of America

Global arthropod beta-diversity is spatially and temporally structured by latitude

Author(s): Seymour, M., Roslin, T., deWaard, J.R., Perez, K.H.J. , D'Souza, M.L., Ratnasingham, S., Ashfaq, M., Levesque-Beaudin, V., Blagoev, G.A., Bukowski, B., Cale, P., Crosbie, D., Decaëns, T., deWaard, S.L., Ekrem, T., El-Ansary, H.O., Ondo, F.E., Fraser, D., Geiger, M.F., Hajibabaei, M., Hallwachs, W., Hanisch, P.E., Hausmann, A., Heath, M., Hogg, I.D., Janzen, D.H., Kinnaird, M., Kohn, J.R., Larriv
Published in: Communications Biology, Issue 7, 2024, ISSN 2399-3642
Publisher: Springer Nature
DOI: 10.1038/s42003-024-06199-1

Species distributions models may predict accurately future distributions but poorly how distributions change : A critical perspective on model validation

Author(s): Sirke Piirainen; Aleksi Lehikoinen; Magne Husby; John Atle Kålås; Åke Lindström; Otso Ovaskainen
Published in: Diversity and Distributions: A Journal of Conservation Biogeography, Issue 29 (5), 2023, Page(s) 654–665, ISSN 1472-4642
Publisher: Blackwell
DOI: 10.1111/ddi.13687

Spatial cumulant models enable spatially informed treatment strategies and analysis of local interactions in cancer systems

Author(s): Sara Hamis; Panu Somervuo; J. Arvid Ågren; Dagim Shiferaw Tadele; Juha Kesseli; Jacob G. Scott; Matti Nykter; Philip Gerlee; Dmitri Finkelshtein; Otso Ovaskainen
Published in: Journal of Mathematical Biology, Issue Volume 86, article number 68, 2023, ISSN 1432-1416
Publisher: Springer

Global patterns in endemicity and vulnerability of soil fungi

Author(s): Leho Tedersoo, Vladimir Mikryukov, Alexander Zizka, Mohammad Bahram, Niloufar Hagh-Doust, Sten Anslan, Oleh Prylutskyi, Manuel Delgado-Baquerizo, Fernando T. Maestre, Jaan Pärn, Maarja Öpik, Mari Moora, Martin Zobel, Mikk Espenberg, Ülo Mander, Abdul Nasir Khalid, Adriana Corrales, Ahto Agan, Aída-M. Vasco-Palacios, Alessandro Saitta, Andrea C. Rinaldi, Annemieke Verbeken,
Published in: Global Change Biology, Issue 28, 2022, Page(s) 6696–6710, ISSN 1365-2486
Publisher: John Wiley & Sons Ltd.
DOI: 10.1111/gcb.16398

Mixed effects of a national protected area network on terrestrial and freshwater biodiversity

Author(s): Santangeli, A., Weigel, B., Antão, L., Kaarlejärvi, E., Hällfors, M., Lehikoinen, A., Lindén, A., Salemaa, M., Tonteri, T., Merilä, P., Vuorio, K., Ovaskainen, O., Vanhatalo, J., Roslin. T. and Saastamoinen, M.
Published in: Nature Communications, Issue 14, 2023, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-023-41073-4

A case study on joint species distribution modelling with bird atlas data: Revealing limits to species' niches

Author(s): Seoane Pinilla, Javier; Estrada, Alba; Jones, Mirkka M.; Ovaskainen, Otso
Published in: Ecological Informatics, Issue 77, 2023, ISSN 1878-0512
Publisher: Elsevier B.V.
DOI: 10.1016/j.ecoinf.2023.102202

Generalized infinite factorization models

Author(s): L Schiavon, A Canale, D B Dunson
Published in: Biometrika, 2022, ISSN 1464-3510
Publisher: Oxford University Press on behalf of the Biometrika Trust
DOI: 10.1093/biomet/asab056

Inferring taxonomic placement from DNA barcoding allowing discovery of new taxa

Author(s): Zito, Alessandro; Rigon, Tommaso; Dunson, David B.
Published in: Methods in Ecology and Evolution, Issue Volume 14, Issue 2, 2022, Page(s) 529-542, ISSN 2041-210X
Publisher: John Wiley and Sons Inc.
DOI: 10.1111/2041-210x.14009

Natural deadwood hosts more diverse pioneering wood‐inhabiting fungal communities than restored deadwood

Author(s): Sonja Saine; Reijo Penttilä; Brendan Furneaux; Norman Monkhouse; Evgeny V. Zakharov; Otso Ovaskainen; Nerea Abrego
Published in: Restoration Ecology, Issue Volume 32, Issue 1, 2024, ISSN 1526-100X
Publisher: Wiley
DOI: 10.1111/rec.14056

The relationships between urbanization and bird functional traits across the streetscape

Author(s): João Carlos Pena; Otso Ovaskainen; Ian MacGregor-Fors; Camila Palhares Teixeira; Milton Cezar Ribeiro
Published in: Landscape and Urban Planning, Issue Volume 232, 2023, ISSN 0169-2046
Publisher: Elsevier BV
DOI: 10.1016/j.landurbplan.2023.104685

Emerging Directions in Bayesian Computation

Author(s): Steven Winter, Trevor Campbell, Lizhen Lin, Sanvesh Srivastava, David B. Dunson
Published in: Statistical Science, Issue 39 (1), 2024, Page(s) 62-89, ISSN 2168-8745
Publisher: Institute of Mathematical Statistics
DOI: 10.1214/23-sts919

The legacy of human use in Amazonian palm communities along environmental and accessibility gradients

Author(s): Gabriela Zuquim; Mirkka M. Jones; Otso Ovaskainen; William Trujillo; Henrik Balslev
Published in: Global Ecology and Biogeography, Issue vol. 32, no. 6, 2023, Page(s) 881-892, ISSN 1466-8238
Publisher: John Wiley & Sons Ltd.
DOI: 10.1111/geb.13667

Dung beetle community patterns in Western Europe: responses of Scarabaeinae to landscape and environmental filtering

Author(s): Camila Leandro; Mirkka Jones; William Perrin; Pierre Jay-Robert; Otso Ovaskainen
Published in: Landscape Ecology, Issue 38, 2023, Page(s) 2323-2338, ISSN 1572-9761
Publisher: Springer
DOI: 10.1007/s10980-023-01711-0

Climate change reshuffles northern species within their niches

Author(s): Laura H. Antão; Benjamin Weigel; Giovanni Strona; Maria Hällfors; Elina Kaarlejärvi; Tad Dallas; Øystein H. Opedal; Janne Heliölä; Heikki Henttonen; Otso Huitu; Erkki Korpimäki; Mikko Kuussaari; Aleksi Lehikoinen; Reima Leinonen; Andreas Lindén; Päivi Merilä; Hannu Pietiäinen; Juha Pöyry; Maija Salemaa; Tiina Tonteri; Kristiina Vuorio; Otso Ovaskainen; Marjo Saastamoinen; Jarno Vanhata
Published in: Nature Climate Change, Issue 12, 2022, Page(s) 587–592, ISSN 1758-6798
Publisher: Springer Nature Limited
DOI: 10.1038/s41558-022-01381-x

A novel model to accurately predict continental-scale timing of forest green-up

Author(s): N. Neupane; M. Peruzzi; A. Arab; S.J. Mayor; J.C. Withey; L. Ries; A.O. Finley
Published in: International Journal of Applied Earth Observation and Geoinformation, Issue 108, 2022, ISSN 1872-826X
Publisher: Elsevier BV
DOI: 10.1016/j.jag.2022.102747

Different currencies for calculating resource phenology result in opposite inferences about trophic mismatches

Author(s): Versluijs Tom S. L., Zhemchuzhnikov Mikhail K., Kutcherov Dmitry, Roslin Tomas, Schmidt Niels Martin, van Gils Jan A., Reneerkens Jeroen
Published in: Proc. R. Soc. B, Issue Volume 291, Issue 2019, 2024, ISSN 1471-2954
Publisher: Royal Society
DOI: 10.1098/rspb.2023.1785

Landscape composition and pollinator traits interact to influence pollination success in an individual-based model

Author(s): Kortsch, Susanne; Cirtwill, Alyssa R. R.; Timberlake, Thomas; Memmott, Jane; Kendall, Liam; Roslin, Tomas; Strona, Giovanni
Published in: Functional Ecology, Issue Volume 37, Issue 7, 2023, Page(s) 2056-2071, ISSN 1365-2435
Publisher: John Wiley & Sons Ltd
DOI: 10.1111/1365-2435.14353

Flower-visitor and pollen-load data provide complementary insight into species and individual network roles

Author(s): Cirtwill, A.R., Wirta, H., Kaartinen, R., Ballantyne, G., Stone, G.N., Cunnold, H., Tiusanen, M., Roslin, T.
Published in: Oikos, Issue Volume 2024, Issue 4, 2024, ISSN 1600-0706
Publisher: John Wiley & Sons Ltd
DOI: 10.1111/oik.10301

Macrosystem community change in lake phytoplankton and its implications for diversity and function

Author(s): Benjamin Weigel; Niina Kotamäki; Olli Malve; Kristiina Vuorio; Otso Ovaskainen
Published in: Global Ecology and Biogeography, Issue 32, 2022, Page(s) 295-309, ISSN 1466-8238
Publisher: John Wiley & Sons Ltd

Graph Based Gaussian Processes on Restricted Domains

Author(s): David B. Dunson; Hau‐Tieng Wu; Nan Wu
Published in: Journal of the Royal Statistical Society, Series B (Statistical Methodology), Issue 84, 2021, ISSN 1369-7412
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/rssb.12486

Spatiotemporal variation in the negative effect of neighbourhood crowding on stem growth

Author(s): Zhang, H., Ovaskainen, O., Chi, X., Guo, Q. and Tang, Z
Published in: Journal of Ecology, Issue 112, 2024, Page(s) 1140–1149, ISSN 1365-2745
Publisher: British Ecological Society
DOI: 10.1111/1365-2745.14291

Local eukaryotic and bacterial stream community assembly is shaped by regional land use effects

Author(s): Benjamin Weigel; Caio Graco-Roza; Jenni Hultman; Virpi Pajunen; Anette Teittinen; Maria Kuzmina; Evgeny V Zakharov; Janne Soininen; Otso Ovaskainen
Published in: ISME Communications, Issue Volume 3, Issue 1, 2023, ISSN 2730-6151
Publisher: Springer Nature
DOI: 10.1038/s43705-023-00272-2

Increasing protected area coverage mitigates climate-driven community changes

Author(s): Petteri Lehikoinen, Maria Tiusanen, Andrea Santangeli, Ari Rajasärkkä, Kim Jaatinen, Jari Valkama, Raimo Virkkala, Aleksi Lehikoinen
Published in: Biological Conservation, 2021, ISSN 0006-3207
Publisher: Elsevier BV
DOI: 10.1016/j.biocon.2020.108892

PROTAX-GPU: a scalable probabilistic taxonomic classification system for DNA barcodes

Author(s): Li Roy, Ratnasingham Sujeevan, Zarubiieva Iuliia, Somervuo Panu, Taylor Graham W.
Published in: Philosophical Transactions B, Issue Volume 379, Issue 1904, 2024, ISSN 1471-2970
Publisher: Royal Society
DOI: 10.1098/rstb.2023.0124

Spatial meshing for general Bayesian multivariate models

Author(s): Peruzzi, Michele; Dunson, David B.
Published in: Journal of Machine Learning Research, Issue 25 (87), 2024, Page(s) 1−49, ISSN 1532-4435
Publisher: MIT Press
DOI: 10.48550/arxiv.2201.10080

Ellipsoid Fitting With the Cayley Transform

Author(s): Omar Melikechi; David B. Dunson
Published in: IEEE Transactions on Signal Processing, Issue vol. 72, 2024, Page(s) 70-83, ISSN 1941-0476
Publisher: IEEE
DOI: 10.1109/tsp.2023.3332560

Scavenging in the realm of senses: smell and vision drive recruitment at carcasses in Neotropical ecosystems

Author(s): Lara Naves-Alegre; Zebensui Morales-Reyes; José Antonio Sánchez-Zapata; Esther Sebastián-González; Otso Ovaskainen
Published in: Proceedings of the Royal Society B, Issue Volume 289, Issue 1986, 2022, ISSN 1471-2954
Publisher: Royal Society
DOI: 10.1098/rspb.2022.0843

Effects of density, species interactions, and environmental stochasticity on the dynamics of British bird communities

Author(s): Lisa Sandal; Vidar Grøtan; Bernt‐Erik Sæther; Robert P. Freckleton; David G. Noble; Otso Ovaskainen
Published in: Ecology, Issue Volume 103, Issue 8, 2022, ISSN 1939-9170
Publisher: Wiley Periodicals LLC
DOI: 10.1002/ecy.3731

A molecular-based identification resource for the arthropods of Finland

Author(s): Roslin, T., Somervuo, P., Pentinsaari, M., Hebert, P., Agda, J., Ahlroth, P., Anttonen, P., Aspi, J., Blagoev, G., Blanco, S., Chan, D., Clayhills, T., deWaard, J., deWaard, S., Elliott, T., Elo, R., Haapala, S., Helve, E., Ilmonen, J., Hirvonen, P., Ho, C., Itämies, J., Ivanov, V., Jakovlev, J., Juslen, A., Jussila, R., Kahanpää, J., Kaila, L., Kaitila, J.-P., Kakko, A., Kakko, I., Karhu, A.,
Published in: Molecular Ecology Resources, 2022, ISSN 1755-0998
Publisher: Wiley-Blackwell
DOI: 10.1111/1755-0998.13510

Spatial Multivariate Trees for Big Data Bayesian Regression

Author(s): Michele Peruzzi, David B. Dunson
Published in: Journal of Machine Learning Research, Issue 23, 2022, Page(s) 1-40, ISSN 1533-7928
Publisher: MLR, Inc. and Microtome Publishing

Bayesian Pyramids: identifiable multilayer discrete latent structure models for discrete data

Author(s): Yuqi Gu, David B Dunson
Published in: Journal of the Royal Statistical Society Series B: Statistical Methodology, Issue Volume 85, Issue 2, 2023, Page(s) 399–426, ISSN 1467-9868
Publisher: Blackwell Publishing
DOI: 10.1093/jrsssb/qkad010

Ecological dependencies make remote reef fish communities most vulnerable to coral loss

Author(s): Giovanni Strona; Pieter S. A. Beck; Mar Cabeza; Simone Fattorini; François Guilhaumon; Fiorenza Micheli; Simone Montano; Otso Ovaskainen; Serge Planes; Joseph A. Veech; Valeriano Parravicini
Published in: Nature Communications, Issue 3, 2021, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-021-27440-z

Bayesian Inference on High-Dimensional Multivariate Binary Responses

Author(s): Chakraborty, A., Ou, R., Dunson, D. B.
Published in: Journal of the American Statistical Association, 2023, Page(s) 1–12, ISSN 1537-274X
Publisher: Taylor & Francis Ltd.
DOI: 10.1080/01621459.2023.2260053

Emerging technologies revolutionise insect ecology and monitoring

Author(s): Roel van Klink; Tom August; Yves Bas; Paul Bodesheim; Aletta Bonn; Frode Fossøy; Toke T. Høye; Eelke Jongejans; Myles H.M. Menz; Andreia Miraldo; Tomas Roslin; Helen E. Roy; Ireneusz Ruczyński; Dmitry Schigel; Livia Schäffler; Julie K. Sheard; Cecilie Svenningsen; Georg F. Tschan; Jana Wäldchen; Vera M.A. Zizka; Jens Åström; Diana E. Bowler
Published in: Trends in Ecology & Evolution, Issue Volume 37, ISSUE 10, 2022, Page(s) 872-885, ISSN 1872-8383
Publisher: Elsevier Ltd
DOI: 10.1016/j.tree.2022.06.001

Contrasting effects of chronic anthropogenic disturbance on activity and species richness of insectivorous bats in neotropical dry forest

Author(s): Meramo, K., Ovaskainen, O., Bernard, E., Silva, C. R., Laine, V. N. and Lilley, T. M.
Published in: Frontiers in Ecology and Evolution, Issue 10, 2022, ISSN 2296-701X
Publisher: Frontiers Media S.A.
DOI: 10.3389/fevo.2022.822415

Distance decay 2.0 – A global synthesis of taxonomic and functional turnover in ecological communities

Author(s): Graco‐Roza, Caio; Aarnio, Sonja; Abrego, Nerea; Acosta, Alicia T. R.; Alahuhta, Janne; Altman, Jan; Angiolini, Claudia; Aroviita, Jukka; Attorre, Fabio; Baastrup‐Spohr, Lars; Barrera‐Alba, José J.; Belmaker, Jonathan; Biurrun, Idoia; Bonari, Gianmaria; Bruelheide, Helge; Burrascano, Sabina; Carboni, Marta; Cardoso, Pedro; Carvalho, José C.; Castaldelli, Giuseppe; Christensen, Morten; Corre
Published in: Global ecology and biogeography, Issue Volume 31, Issue 7, 2022, Page(s) 1399-1421, ISSN 1466-8238
Publisher: John Wiley & Sons Ltd
DOI: 10.1111/geb.13513

Convergence of dominance and neglect in flying insect diversity

Author(s): Amrita Srivathsan; Yuchen Ang; John M. Heraty; Wei Song Hwang; Wan F. A. Jusoh; Sujatha Narayanan Kutty; Jayanthi Puniamoorthy; Darren Yeo; Tomas Roslin; Rudolf Meier
Published in: Nature Ecology & Evolution, Issue 7, 2023, Page(s) 1012–1021, ISSN 2397-334X
Publisher: Nature Portfolio
DOI: 10.1038/s41559-023-02066-0

Highly scalable Bayesian geostatistical modeling via meshed Gaussian processes on partitioned domains

Author(s): M Peruzzi, S Banerjee, AO Finley
Published in: Journal of the American Statistical Association, 2020, ISSN 1537-274X
Publisher: Taylor & Francis on behalf of the American Statistical Association
DOI: 10.1080/01621459.2020.1833889

Bayesian Modeling of Sequential Discoveries

Author(s): Alessandro Zito; Tommaso Rigon; Otso Ovaskainen; David B. Dunson
Published in: Journal of the American Statistical Association, Issue 118 (544), 2022, Page(s) 2521–2532, ISSN 1537-274X
Publisher: Taylor & Francis
DOI: 10.1080/01621459.2022.2060835

Novel community data in ecology - properties and prospects

Author(s): Hartig, F., Abrego, N., Bush, A., Chase, J. M., Guillera-Arroita, G., Leibold, M. A., Ovaskainen, O., Pellissier, L., Pichler, M., Poggiato, G., Pollock, L., Si-Moussi, S., Thuiller, W., Viana, D. S, Warton, D., Zurell, D. and Yu, D. W.
Published in: Trends in Ecology & Evolution, Issue 39 (3), 2024, Page(s) 280-293, ISSN 1872-8383
Publisher: Elsevier Ltd
DOI: 10.1016/j.tree.2023.09.017

Nationally reported metrics can’t adequately guide transformative change in biodiversity policy

Author(s): Sara Fraixedas, Tomas Roslin, Laura H. Antão, Juha Pöyry, Anna-Liisa Laine
Published in: Proceedings of the National Academy of Sciences, 2022, ISSN 1091-6490
Publisher: United States National Academy of Sciences
DOI: 10.1073/pnas.2117299119

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A Planetary Inventory of Life – a New Synthesis Built on Big Data Combined with Novel Statistical Methods

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