Risultati finali
Public release of all current code development within the project, with accompanying documentation, tests, benchmarks, and benchmark reports.
First release of demonstration workflowsThis deliverable will cover the first release of demonstration workflows. It will include an update of the initial roadmap.
Project release of core applicationsPublic release of all current code development within the project, with accompanying documentation, tests, benchmarks, and benchmark reports.
Final release of demonstration workflowsThis deliverable will present in detail the demonstration workflows implemented, including feedback considerations, usability, availability and results.
Report on the design and development of initial workflows combining HPC and HPDA operations
Best Practice GuidesA collection of best practices developed for the core project codes and related work in T34
Quality assurance and risk management planThis deliverable will discuss the overall quality monitoring process for the project (such as deliverables and milestone completion, KPIs) and the overall risk management strategy. The risks will be regularly assessed in the mandatory management reports.
Updated specification of development processA report specifying the software engineering testing and quality assurance aspects of the project building on past efforts and adapting them to new codes and changed contexts This will also include a report of the BioExcel CP2K profiling outcome
Business Model design reportDetailed BioExcel Business Model for taking the project into a sustainability phase
Provision of a Workflow Environment at BioExcel portalReport on the updates implemented in the BioExcel Cloud Portal
Integration of BioExcel software framework with standards and international initiativesThe deliverable will detail the integration of BioExcel computational framework with external initiatives like ELIXIR GA4GH
Update of whitepaper on scientific software developmentPublication of an updated version of the scientific software development white paper published by the first BioExcel project This should reflect the current state of software development of the BioExcel codes as well updates to reflect changes in software development standards
Exascale co-design benchmark casesKey kernels from the core applications will be extracted to become useful to vendor or tool implementers as optimization targets
Updated software roadmapsThe roadmap for each of the core applications will be updated for new changes to HPC hardware and software contexts user requests and progress since previous roadmaps
Work Plans for UCsThis deliverable will contain the detailed workplans for the use cases
Branding and Quality Mark Design Inception ReportAn initial document setting the vision for the CoE brand as a European Centre promoting quality
Pre-Exascale showcase calculation and Use Case Final ReportA large preExascale showcase calculation will be performed and analysed This deliverable will also include a final report on the work undertaken on the projects use cases
User Community Support and Engagement Report (final)An update to D34 to include work from the second half of the project in the same areas as D34 along with a summary of feedback from the CAPRI workshop or relevant T36 work
Annotated and justified Service CatalogueA first list of exploitable assets identified
Management PlanInitial deliverable stating the management organization and planning for the entire project
Dissemination and outreach planThis document will outline the overall plan for dissemination and outreach activities of the CoE
State-of-the-art and Initial RoadmapThis deliverable will summarise and describe the new technologies, methods and tools identified and collected to be used in the project workflows. From these, an initial roadmap will be proposed.
User Community Support and Engagement Report (half-time update)Reports from events community support engagement activities and summary of feedback provided to the rest of the project This report will also include results and analysis of the first and second user surveys
Final report on dissemination and trainingReport on the status and outcome of the disseminationoutreach activities and the training programme during the second half of the project
Long-term hardware and application roadmapThe roadmap for each of the core applications will be related to what has been achieved in BioExcel2 and updated for new changes to HPC hardware and software contexts user requests and progress since previous roadmaps An update to D13
High Performance Computing in support of COVID-19 ResearchDescription of BioExcels work in the global efforts against Covid19
Use Case Progress ReportAn update on the progress of the use cases
Progress report and update on training and dissemination planThis document will report on the status and outcome of the dissemination/outreach activities and the training programme. Additionally, it will present updated plans for the second half of the project.
First release of workflow-ready building blocks libraryThis deliverable will describe the design and development of the first release of the building blocks library.
Training PlanThis document will include a report of the updated competency profile, an evaluation of the virtual training pilots, and outline of the BioExcel Training programme.
The data management plan for the use cases
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bioRxiv, 2020, ISSN 0362-4331
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New York Times Company
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