CORDIS provides links to public deliverables and publications of HORIZON projects.
Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .
Deliverables
Presentation of all models developed by WP4.4 during the SGA2, including: functions and performance, validation (by SP4, by rest of the HBP and/or by third parties), how results compare to targeted impact, and links to models and related datasets in publicly accessible online repositories.
D2.4.1 Software tool for brain structure - phenotype associationsSoftware tool for brain structure - phenotype associations implemented (T2.4.2); software available for usage
D9.1.1 Working prototype of a Collaboratory app for graphical model buildingCollaboratory app usable by an SP9 member outside the developer team
D5.6.1 Interactive classifier training via the new ViewerUsers can train machine learning algorithms interactively by giving annotations in the web-based Viewer (T5.6.1)
D2.6.1 Tool for Morphological classification of neuronsTool for Morphological classification of neurons (T2.6.4) made available; storage of software on HBP Collab
D5.3.1 New release of interactive spatial alignment toolWe will deploy the 2nd release of the interactive spatial alignment tool started in SGA1. The release will provide a significantly streamlined user interface, especially a much better user experience in terms of landmark management and interactive navigation. (T5.3.3)
D7.3.1 Multi-compartment benchmark and validation suites on HPC systemsThe validation and benchmark suites for multi- compartment simulators are deployed and their associated documentation can be downloaded from public repositories; the continuous integration framework is publishing up to date validation and benchmark results from HPC systems used in the HBP.
D9.5.1 Temporal filtering networkNetwork for temporal filtering running on SpiNNaker (Task 9.5.1)
D2.3.1 Alignment strategy of datasets from TPFM, 3D-PLI, and dMRIAlignment strategy of datasets from TPFM, 3D-PLI, and dMRI implemented (T2.3.4); Datasets made available in the HBP human brain atlas
D9.3.1 PyNN 0.9 on SpiNNakerAs complete a PyNN 0.9 implementation on SpiNNaker as possible (Task 9.3.3)
D5.7.1 Representations of optical imaging data in the Neo data object modelThis is a release of the Neo library that contains support for the representations of optical imaging data. This feature will facilitate the analysis of activity data obtained from optical imaging experiments using tools built on the Neo data model. Successful representation of a dataset in the Neo object model, and the subsequent application of an analysis function of the Elephant framework on that data object, will be shown (T5.7.1-2)
D4.3.1 All Models of Plasticity, Learning and Memory developed during SGA2Presentation of all models developed by WP4.3 during the SGA2, including: functions and performance, validation (by SP4, by rest of the HBP and/or by third parties), how results compare to targeted impact, and links to models and related datasets in publicly accessible online repositories.
D4.5.1 All Whole-Brain Models developed during SGA2 and Comparison with ExperimentsPresentation of all models developed by WP4.5 during the SGA2, including: functions and performance, validation (by SP4, by rest of the HBP and/or by third parties), how results compare to targeted impact, and links to models and related datasets in publicly accessible online repositories.
D2.1.1 Comparison of Deep-learning based cytoarchitectonic mapping of cortex in the big brain against gold standard cytoarchitectonic mapDeep-learning based cytoarchitectonic mapping of cortex in the big brain and comparison against gold standard cytoarchitectonic map (T2.1.4); map made available in the HBP human brain atlas
D8.5.3 Μedical Informatics Platform Releases - SOFTWARE & REPORTΜedical Informatics Platform Releases - SOFTWARE & REPORT
D5.4.1 First release of software adapted to new Viewer ArchitectureCoordinated release of several services related to atlas viewers, adapted to a more unified viewer infrastructure. The architecture of this unified viewer ecosystem will be specified by SP5 towards the end of SGA1 and become the basis for this work. (T5.4.3)
D4.2.1 All Models of Brain Circuits developed during SGA2Presentation of all models developed by WP4.2 during the SGA2, including: functions and performance, validation (by SP4, by rest of the HBP and/or by third parties), how results compare to targeted impact, and links to models and related datasets in publicly accessible online repositories.
D4.1.1 All Models for Bridging Scales developed duringPresentation of all models developed by WP4.1 during the SGA2, including: functions and performance, validation (by SP4, by rest of the HBP and/or by third parties), how results compare to targeted impact, and links to models and related datasets in publicly accessible online repositories.
Overview of key results and impact achieved in M1-M12, tailored for presentation to the relevant audiences (research/industry/public). References to HBP/SP/CDP objectives and use cases for navigation between multiple Subprojects. Linkage of results to components/a set of component factsheets (lower-level information: component ownership, technology readiness level, performed quality control checks, etc.).
D12.4.1 Data Policy ManualHaving a set of data-related policies is a requirement for the HBP in order to: -Ensure that expectations with regards to data handling are clear -Comply with all data-related regulations and legislation, in particular those related to data protection -Ensure that all data registered and used in the HBP comply with ethical and other requirements -Demonstrate good management and leadership and implement good practice in data management Milestone verified by upload of the Data Policy Manual.
D1.6.2 SP1 Mouse Brain Organisation and Interspecies Comparisons - Second Data Results package (update on implementation of the DMP - M24)WPs involved: WP1.1, WP1.2, WP1.3, WP1.4, WP1.5, and WP1.6 Contents: final report on the SP1 planned deliveries. This report will include the datasets generated in the SGA2 on whole brain and four major brain circuits (neocortex, cerebellum, basal ganglia, and hippocampus) data. This report will also include the final results on the integration of molecular, cellular and functional data (neocortex, cerebellum, basal ganglia, and hippocampus) and its application for modelling.
D1.3.2 CDP1 Annual Compound Deliverable Year 2CDP1 Annual Compound Deliverable Year 2 Overview of Key Results and Impact achieved in M13 to M24, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.)
D5.1.1 Completion of SGA1 data/model curation into NIP meta data databaseTable showing link between data/model components in PLA and curated data/models in NIP (T5.1.1-2)
D8.6.1 CDP6 Results SGA2 Year 1 Implementation for accurate HPC-based screening protocols of neuro-drug candidatesCDP6 Results SGA2 Year 1 Implementation for accurate HPC-based screening protocols of neuro-drug candidates. CDP6 Annual compound deliverable Year 1 Overview of Key Results and Impact achieved in M1 to M12, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.) This deliverable will also refer to results for SGA2_HPC-based chemical optimisation codes and increasing ligand specificity toward receptors' subclasses
D12.5.2 SGA2 - SP12 M24 reporting (Component id: 2328)Progress report SP12 M24 SGA2
D9.6.2 SP9 Neuromorphic Computing Platform - Results from SGA2 year 2The summary of SP 9 results for project months M13-24, broken down by task. WPs involved: WP9.1, WP9.2, WP9.3, WP9.4, WP9.5 and WP9.6 In order to report fully, the Deliverable may need to include information that the SP does not wish to make public at the time of the report. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published publicly.
D6.4.1 CDP2 Annual Compound Deliverable Year 2Overview of key results and impact achieved in M13-M24, tailored for presentation to the relevant audiences (research/industry/public). References to HBP/SP/CDP objectives and use cases for navigation between multiple Subprojects. Linkage of results to components/a set of component factsheets (lower-level information: component ownership, technology readiness level, performed quality control checks, etc.).
D2.7.3 CDP3 Results for SGA2 Year 1CDP3 SGA2 Results Overview Deliverable: Overview of Key Results achieved in M1 to M12, tailored for presentation to the relevant audiences (research/industry/public)
D3.1.1 Simultaneous 2-photon calcium imaging in dendritic tufts receiving feedback inputs, and cell bodies of the same neurons receiving feedforward inputsData collected and paper published. Cross-species comparisons in visual cortex incorporated. (T.3.1.2)
D10.5.2 SP10 Neurorobotics Platform - Results for SGA2 Year 2WPs involved: WP10.1, WP10.2, WP10.3, WP10.4 & WP10.5 Summary of SP Results for M12-24, broken down by Task: o Actual vs. planned results (due & done/due & not done) o Results passed to another Task, WP or SP (due & done/due & not done) o Milestones due and achieved, how validated, by whom. o Milestones due but not achieved, why, impact, corrective action o Publications
D7.2.1 Key technologies for fast data access and retrievalThis report summarises key technologies to support fast data access and retrieval for interactive analysis and visualisation, which have been identified and tested. This deliverable does not yet comprise the final implementation of these technologies.
D12.3.2 2nd Report SP12-SGA2: Lessons from stakeholder engagement and dialogueThe report collects up on the lessons learned from stakeholder dialogue and engagement in the Human Brain Project, from the ramp-up to the end of the SGA2 phase, and it develops foundation for stakeholder engagement in the final phases of the Human Brain Project.
D11.5.1 Fourth HBP Curriculum teaching cycle released (T11.5.2)Third HBP Curriculum teaching cycle through online questionnaire evaluated and online courses adapted. Fourth teaching cycle started and Call for Expression of Interest for HBP Curriculum Workshops announced. Evaluation results are made available for consortium members and the public upon request. Call for Expression of Interest announced to the scientific community.
D8.5.1 Software requirements specifications (SRS) - REPORTSoftware requirements specifications (SRS) - REPORT
D6.3.1 SP6 Annual Compound Deliverable Year 2Overview of key results and impact achieved in M13-M24, tailored for presentation to the relevant audiences (research/industry/public). References to HBP/SP/CDP objectives and use cases for navigation between multiple Subprojects. Linkage of results to components/a set of component factsheets (lower-level information: component ownership, technology readiness level, performed quality control checks, etc.).
D5.8.2 SP5 Neuroinformatics Platform - Results for SGA2 Year 2Summary of SP Results for M13-24, broken down by Task: o Actual vs. planned results (due & done/due & not done) o Results passed to another Task, WP or SP (due & done/due & not done) o CDP Products (due & done/due & not done) o Milestones due and achieved, how validated, by whom. o Milestones due but not achieved, why, impact, corrective action o Publications NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website.
D12.3.1 Report on SP12-SGA2 Citizen engagementReport on citizen engagement activities across Europe, including recommendations from citizens to the Human Brain Project.
D8.4.1 Reports on disease signatures via sub-type identification, on development and application of methods, and toolsReport on identification of disease signatures and application development is delivered.
D5.2.1 Release of updated atlas curation supporting materialUsers can access tutorials and SOPs from HBP workbench or request support from UiO atlas curation team (T5.2.2)
D5.8.1 SP5 Neuroinformatics Platform - Results for SGA2 Year 1SP5 Neuroinformatics Platform - Results for SGA2 Year 1 Summary of SP Results for M1-12, broken down by Task: o Actual vs. planned results (due & done/due & not done) o Results passed to another Task, WP or SP (due & done/due & not done) o CDP Products (due & done/due & not done) o Milestones due and achieved, how validated, by whom. o Milestones due but not achieved, why, impact, corrective action o Publications o SP Roadmap for SGA2, validated by other SPs receiving inputs from your SP NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website.
D8.3.1 Signed partnership with one European reference networkSigned partnership with one European reference network
D3.6.1 Systems and Cognitive Neuroscience - Results for SGA2 Year 1WPs involved: WP3.1, WP3.2., WP3.3, WP3.4, WP3.5, WP3.6 Summary of SP3 Results for M1-12, broken down by Task: o Actual vs. planned results (due & done/due & not done) o Results passed to another Task, WP or SP (due & done/due & not done) o CDP products (due & done/due & not done) o Milestones due and achieved, how validated, by whom. o Milestones due but not achieved, why, impact, corrective action o Publications
D2.7.4 CDP3 Results for SGA2 Year 2CDP3 SGA2 Results Overview Deliverable Overview of Key Results achieved in M13 to M24, tailored for presentation to the relevant audiences (research/industry/public)
D9.4.1 CDP5-Biological deep learning: Results for SGA2 Year 1CDP5-Biological deep learning: Results for SGA2 Year 1 CDP5 Annual compound deliverable Year 1 Overview of Key Results and Impact achieved in M1 to M12, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.) This deliverable will be a public report including theoretical research on learning principles, their transfer to the HBP computing infrastructures in SP7 and SP9, results of initial experiments and plans for M13 to M24 in SGA2
D4.6.1 SP4 EITN activity reportReport on EITN activity, its success, points that can be improved and what is foreseen
D8.2.1 MIP installed in Thirty HospitalsMIP installed in Thirty Hospitals Demonstration of MIP software installation in 30 hospitals. Demonstration will be in form of a summary report of results: data profiling in each site, issues and lessons learned, user tests and feedback received during the hand-over and training.
D5.10.1 CDP8 Results SGA2CDP8 SGA2 Results Overview Deliverable: Overview of Key Results achieved in M1 to M24, tailored for presentation to the relevant audiences. WPs involved: WP5.10. Key results involved: KRc8.1, KRc8.2, KRc8.3. Use cases involved: SGA2-SP4-UC001, SGA2-SP5-UC001, SGA2-SP5-UC002, SGA2-SP6-UC001, SGA2-SP6-UC003, SGA2-SP7-UC001, SGA2-SP11-UC003. The report summarizes the results obtained during the project phase, which will involve: code for large-scale brain simulation on HBP’s Joint Platform; code for connectome extraction and integration of results into NIP ontology; interactive tutorials; preprocessed connectomes from major repositories; online version of von Economo and Koskinas atlas; linked connectivity to architectonic data; human connectivity predictions.
D1.6.3 SP1 Mouse Brain Organisation and Interspecies Comparisons - Comparative study of cells and microcircuits in the rodent and human brainWPs involved: WP1.1, WP1.2, WP1.3, WP1.4, WP1.5, and WP1.6 Contents: report on the final comparative study of cells and microcircuits in the rodent and human brain.
D7.6.1 SP7 High-Performance Analytics and Computing Platform - Results for SGA2 Year 1High Performance Analytics and Computing Platform v2.5. The Platform, accessible to end users through the HBP Collaboratory, will provide the HBP and the neuroscience community with access to federated data and scalable compute resources as well as visualisation and simulation technology.
D9.4.2 CDP5-Biological deep learning: Results for SGA2 Year 2CDP5 Annual compound deliverable Year 2 Overview of Key Results and Impact achieved in M13 to M24, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.) This deliverable will be a public report including theoretical research on learning principles, their transfer to the HBP computing infrastructures in SP7 and SP9, final experimental results and applications, an evaluation of the developments outside the HBP and a planning outlook to SGA3.
D12.2.1 Report on conceptual issues in human identityReport on conceptual issues in human identity.
D2.7.2 SP2 Human Brain Organisation - Results for SGA2 Year 2WPs involved: WP2.1, WP2.2., WP2.3, WP2.4, WP2.5, WP2.6 & WP2.7 Summary of SP Results for M13-24
D8.10.1 Provide operational MIP infrastructures to UKAACHEN and CHARITEProvide operational MIP infrastructures to UKAACHEN (P73) and CHARITE (P122), to develop and implement a pathophysiological model for neurobehavioural symptom clustering. Test run and report of data analysis.
D7.6.2 SP7 High-Performance Analytics and Computing Platform - Results for SGA2 Year 2High Performance Analytics and Computing Platform v3. The Platform, accessible to end users through the HBP Collaboratory, will provide the HBP and the neuroscience community with access to federated data and scalable compute resources. It will also provide visualisation and exascale-ready simulation technology.
D8.1.2 SP8 MIP - Results for SGA2 Year 2SP8 MIP - Results for SGA2 period 2 SP8 Summary of Results for M12-24: actual vs. planned results o Risks and Issues log updated o Key Results, Impact status & Exceptional Achievements (from users' perspective) o Dependent results flow (i.e. if/how dependent components were incorporated into the next) o Milestones due and achieved, how validated, by whom o Milestones due but not achieved, why, impact, corrective action o Lessons Learned (and if any incorporated already) o Product Roadmap updated o Platform User feedback on the period o Publications
D6.2.1 CDP2 Annual Compound Deliverable Year 1Overview of key results and impact achieved in M1-M12, tailored for presentation to the relevant audiences (research/industry/public). References to HBP/SP/CDP objectives and use cases for navigation between multiple Subprojects. Linkage of results to components/a set of component factsheets (lower-level information: component ownership, technology readiness level, performed quality control checks, etc.).
D1.6.1 SP1 Mouse Brain Organisation and Interspecies Comparisons: First Data Results package (update on implementation of the DMP - M12)WPs involved: WP1.1, WP1.2, WP1.3, WP1.4, WP1.5, and WP1.6 Contents: First report including the preliminary list of deliveries for the period M01-M12 including datasets, tools, and models. The results expected to be included are as follows: preliminary datasets generated in the SGA2 on whole brain and four major brain circuits (neocortex, cerebellum, basal ganglia, hippocampus); First draft on the integration of molecular, cellular and functional data (neocortex, cerebellum, basal ganglia, hippocampus) and its application for modelling; Preliminary datasets for the comparative study of cells and microcircuits in the rodent and human brain.
D8.1.1 SP8 MIP - Results for SGA2 Year 1SP8 MIP - Results for SGA2 period 1 SP8 Summary of Results for M1-12: actual vs. planned results o Risks and Issues log updated o Key Results, Impact status & Exceptional Achievements (from users' perspective) o Dependent results flow (i.e. if/how dependent components were incorporated into the next) o Milestones due and achieved, how validated, by whom o Milestones due but not achieved, why, impact, corrective action o Lessons Learned (and if any incorporated already) o Product Roadmap updated o Platform User feedback on the period o Publications
D11.1.1 Governance handbookDIR handbook with procedures to follow regarding internal management, interactions with PCO, with SP Leaders and with Advisory Boards. (T11.1.2)
D12.1.1 SP12-SGA2 Foresight Lab & Researchers Awareness background report 2Original research: Briefing report on Communities and Infrastructure Building. Milestone verified by upload of the report.
D11.2.10 Gender Action PlanThe Gender Action Plan is a required reference document to align structure and processes, objectives and key activities for improved gender equality in HBP with DIR, SIB, GAC, Ethic Board, Education Programme and Subprojects.
D12.5.3 SGA2-SP12 Communication reporting (Component id: 2329)Communication report SP12 M24 SGA2
D11.1.3 SP11 Management and Coordination – Public Key Results Year 2Summary of SP11 public Key Results for SGA2 Year 2 (M13-M24)
D10.5.1 SP10 Neurorobotics Platform - Results for SGA2 Year 1WPs involved: WP10.1, WP10.2, WP10.3, WP10.4 & WP10.5 Summary of SP Results for M1-12, broken down by Task: o Actual vs. planned results (due & done/due & not done) o Results passed to another Task, WP or SP (due & done/due & not done) o Milestones due and achieved, how validated, by whom. o Milestones due but not achieved, why, impact, corrective action o Publications o SP Roadmap for SGA3
D12.5.4 SP12 Opinion 3 (Component id: 1967)SP12's third Opinion on ethical, philosophical and societal issues related to consciousness. (ID: 1967)
D2.2.1 CDP4 Visuo-Motor Integration - Results for SGA2 Year 1CDP4 Annual compound deliverable Year 1 Overview of Key Results and Impact achieved in M1 to M12, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.)
D11.3.4 Short Summary of Infrastructure Voucher ProgrammeInfrastructure Vouchers calls closed; vouchers assigned to the selected users; budget distribution made; short evaluation summary report (T11.3.4, T11.6.1)
D3.3.1 Acquisition of first datasets of electrophysiological recordings of hippocampal cells in VR environmentRelease of software code and simulated data (preliminary version) (T3.2.5)
D12.5.1 SGA2-SP12 M12 reportingProgress report of SP12 for M12 SGA2.
D9.6.1 SP9 Neuromorphic Computing Platform - Results from SGA2 year 1The summary of SP 9 results for project months M1-12, broken down by task. WPs involved: WP9.1, WP9.2, WP9.3, WP9.4, WP9.5 and WP9.6 In order to report fully, the Deliverable may need to include information that the SP does not wish to make public at the time of the report. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published publicly.
D7.1.1 HPAC Platform Architecture Specification v1This report will contain a first specification within SGA2 of the HPAC Platform including the Fenix infrastructure.
D6.5.1 SP6 Summary Report on Community OutreachSummary report of SP6 SGA2 community outreach.
D4.7.1 SP4 Theoretical Neuroscience models - 1st partInvolves all models of work done from all members of the SP4 during the 1st year of SGA2. As there are some models not yet published, there will be a confidential annex for this confidential data that will be only accessible to reviewers, EC and PCO.
D3.6.2 SP3 Systems and Cognitive Neuroscience - Results for SGA2 Year 2WPs involved: WP3.1, WP3.2., WP3.3, WP3.4, WP3.5, WP3.6 Summary of SP3 Results for M13-24, broken down by Task: o Actual vs. planned results (due & done/due & not done) o Results passed to another Task, WP or SP (due & done/due & not done) o CDP products (due & done/due & not done) o Milestones due and achieved, how validated, by whom. o Milestones due but not achieved, why, impact, corrective action o Publications
D 1.3.1 CDP1 Annual Compound Deliverable Year 1CDP1 Annual Compound Deliverable Year 1 Overview of Key Results and Impact achieved in M1 to M12, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.)
D5.9.1 Strategy and organization of a High-Level Support Team (HLST)Plan for decision making on the use of resources to achieve the overall goals of the joint platform and organization and coordination of the operations of the HLST.
D4.4.2 CDP7 Results SGA2This deliverable describes the results of CDP7during SGA2, focusing in particular on novel empirical and computational studies of hierarchical navigational planning in humans and rodents
D2.7.1 SP2 Human Brain Organisation - Results for SGA2 Year 1WPs involved: WP2.1, WP2.2., WP2.3, WP2.4, WP2.5, WP2.6 & WP2.7 Summary of SP Results for M1-12
D2.5.1 CDP4 Visuo-Motor Integration - Results for SGA2 Year 2CDP4 Annual compound deliverable Year 2 Overview of Key Results and Impact achieved in M13 to M24, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.)
D8.6.2 CDP6 Results SGA2 Year 2 HPC-based chemical optimisation codes increasing ligand specificity toward receptors' subclassesCDP6 Annual compound deliverable Year 2 Overview of Key Results and Impact achieved in M13 to M24, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.) This deliverable will also refer to results for SGA2_HPC-based screening protocols and implementation for accurate HPC-based screening protocols of neuro-drug candidates.
Brain ontologies are integrated and accessible through OLS-NEURO. All application services (OLS-NEURO, SCAIView-Neuro) are online and available for use in MIP.
D8.7.2 BIDS Apps for imaging data processing pipelinesApplications for the imaging data processing pipelines using the Brain Imaging Data Structure format.
D5.5.1 Reproducible scientific software release 2This production release will make publicly available JupyterLab functionality optimized and integrated with HBP data management solutions and data service APIs (T5.5.2)
D8.5.2 Μedical Informatics Platform Releases - SOFTWARE & REPORTSOFTWARE & REPORT
D7.5.1 HPAC Platform including CEA resourcesThe compute and storage resources of the new HPAC partner CEA are integrated into the HPAC Platform, including the corresponding documentation in the Guidebook. The implementation of a use case workflow is used to demonstrate the functionality and documented in a short report.
The HBP Visualisation Catalogue gives an overview of all visualisation tools and methods available in the HBP. It is a publicly available website that is also integrated into the Collaboratory. It contains semantic query functionality to support users in finding the right visualisation method and software for their specific needs.
Publications
Author(s):
Miguel Guevara, Pamela Guevara, Claudio Román, Jean-François Mangin
Published in:
NeuroImage, Issue 212, 2020, Page(s) 116673, ISSN 1053-8119
Publisher:
Academic Press
DOI:
10.1016/j.neuroimage.2020.116673
Author(s):
Guanxiao Qi, Danqing Yang, Chao Ding, Dirk Feldmeyer
Published in:
Frontiers in Synaptic Neuroscience, Issue 12, 2020, ISSN 1663-3563
Publisher:
Frontiers Research Foundation
DOI:
10.3389/fnsyn.2020.00005
Author(s):
Maximilian Schmidt, Rembrandt Bakker, Claus C. Hilgetag, Markus Diesmann, Sacha J. van Albada
Published in:
Brain Structure and Function, Issue 223/3, 2018, Page(s) 1409-1435, ISSN 1863-2653
Publisher:
Springer Verlag
DOI:
10.1007/s00429-017-1554-4
Author(s):
Nicola Palomero-Gallagher, Karl Zilles
Published in:
NeuroImage, Issue 197, 2019, Page(s) 716-741, ISSN 1053-8119
Publisher:
Academic Press
DOI:
10.1016/j.neuroimage.2017.08.035
Author(s):
Eduardo Martin Moraud, Marco Capogrosso, Emanuele Formento, Nikolaus Wenger, Jack DiGiovanna, Grégoire Courtine, Silvestro Micera
Published in:
Neuron, Issue 89/4, 2016, Page(s) 814-828, ISSN 0896-6273
Publisher:
Cell Press
DOI:
10.1016/j.neuron.2016.01.009
Author(s):
Shigekazu Tabata, Marijo Jevtic, Nobutaka Kurashige, Hirokazu Fuchida, Munetsugu Kido, Kazushi Tani, Naoki Zenmyo, Shohei Uchinomiya, Harumi Harada, Makoto Itakura, Itaru Hamachi, Ryuichi Shigemoto, Akio Ojida
Published in:
iScience, Issue 22, 2019, Page(s) 256-268, ISSN 2589-0042
Publisher:
Elsevier BV
DOI:
10.1016/j.isci.2019.11.025
Author(s):
Andrea Santuy, José-Rodrigo Rodríguez, Javier DeFelipe, Angel Merchán-Pérez
Published in:
eneuro, Issue 5/1, 2018, Page(s) ENEURO.0377-17.2017, ISSN 2373-2822
Publisher:
Society for Neuroscience
DOI:
10.1523/eneuro.0377-17.2017
Author(s):
Timo Wunderlich, Akos F. Kungl, Eric Müller, Andreas Hartel, Yannik Stradmann, Syed Ahmed Aamir, Andreas Grübl, Arthur Heimbrecht, Korbinian Schreiber, David Stöckel, Christian Pehle, Sebastian Billaudelle, Gerd Kiene, Christian Mauch, Johannes Schemmel, Karlheinz Meier, Mihai A. Petrovici
Published in:
Frontiers in Neuroscience, Issue 13, 2019, ISSN 1662-453X
Publisher:
Frontiers Media SA
DOI:
10.3389/fnins.2019.00260
Author(s):
James C. Knight, Philip J. Tully, Bernhard A. Kaplan, Anders Lansner, Steve B. Furber
Published in:
Frontiers in Neuroanatomy, Issue 10, 2016, ISSN 1662-5129
Publisher:
Frontiers Research Foundation
DOI:
10.3389/fnana.2016.00037
Author(s):
Amirreza Yousefzadeh, Luis A. Plana, Steve Temple, Teresa Serrano-Gotarredona, Steve B. Furber, Bernabe Linares-Barranco
Published in:
IEEE Transactions on Circuits and Systems II: Express Briefs, Issue 63/8, 2016, Page(s) 763-767, ISSN 1549-7747
Publisher:
Institute of Electrical and Electronics Engineers
DOI:
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PLOS Computational Biology, Issue 14/7, 2018, Page(s) e1006216, ISSN 1553-7358
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Public Library of Science (PLoS)
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Nature Neuroscience, Issue 21/7, 2018, Page(s) 903-919, ISSN 1097-6256
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Nature Publishing Group
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Frontiers in Neural Circuits, Issue 12, 2018, ISSN 1662-5110
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Frontiers Research Foundation
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Frontiers in Neuroscience, Issue 12, 2018, ISSN 1662-453X
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Frontiers Media SA
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IEEE Transactions on Circuits and Systems I: Regular Papers, Issue 65/12, 2018, Page(s) 4299-4312, ISSN 1549-8328
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Frontiers in Cellular Neuroscience, Issue 12, 2018, ISSN 1662-5102
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Frontiers Research Foundation
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PLOS Computational Biology, Issue 14/7, 2018, Page(s) e1006160, ISSN 1553-7358
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Scientific Reports, Issue 8/1, 2018, ISSN 2045-2322
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Nature Publishing Group
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Nucleic Acids Research, Issue 46/W1, 2018, Page(s) W417-W422, ISSN 0305-1048
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Scientific Data, Issue 5, 2018, Page(s) 180105, ISSN 2052-4463
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Scientific Reports, Issue 8/1, 2018, ISSN 2045-2322
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Nature Publishing Group
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PLOS Computational Biology, Issue 14/6, 2018, Page(s) e1006221, ISSN 1553-7358
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Frontiers in Neuroscience, Issue 12, 2018, ISSN 1662-453X
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Neuroscience & Biobehavioral Reviews, Issue 90, 2018, Page(s) 400-410, ISSN 0149-7634
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Physical Review E, Issue 97/5, 2018, ISSN 2470-0045
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American Physical Society (APS)
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Brain Stimulation, Issue 11/5, 2018, Page(s) 982-990, ISSN 1935-861X
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Frontiers in Neuroanatomy, Issue 12, 2018, ISSN 1662-5129
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Frontiers in Neuroscience, Issue 12, 2018, ISSN 1662-453X
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Biological Psychiatry, Issue 84/9, 2018, Page(s) 634-643, ISSN 0006-3223
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NeuroImage, Issue 178, 2018, Page(s) 238-254, ISSN 1053-8119
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Frontiers in Neuroscience, Issue 12, 2018, ISSN 1662-453X
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Nature Nanotechnology, Issue 13/8, 2018, Page(s) 755-764, ISSN 1748-3387
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Nature Publishing Group
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Frontiers in Psychology, Issue 9, 2018, ISSN 1664-1078
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Frontiers Research Foundation
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Cerebral Cortex, Issue 28/7, 2018, Page(s) 2551-2562, ISSN 1047-3211
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Frontiers in Computational Neuroscience, Issue 12, 2018, ISSN 1662-5188
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Journal of Neurology, Issue 265/6, 2018, Page(s) 1376-1380, ISSN 0340-5354
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Frontiers in Neuroinformatics, Issue 12, 2018, ISSN 1662-5196
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Brain Structure and Function, Issue 223/6, 2018, Page(s) 2767-2783, ISSN 1863-2653
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The R Journal, Issue 10/2, 2019, Page(s) 455, ISSN 2073-4859
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Neuroethics, 2018, ISSN 1874-5490
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PLOS ONE, Issue 13/9, 2018, Page(s) e0201192, ISSN 1932-6203
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Neuropsychopharmacology, Issue 44/13, 2019, Page(s) 2285-2293, ISSN 0893-133X
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Nature Publishing Group
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Frontiers in Systems Neuroscience, Issue 13, 2019, ISSN 1662-5137
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Frontiers in Systems Neuroscience, Issue 13, 2019, ISSN 1662-5137
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Frontiers in Systems Neuroscience, Issue 13, 2019, ISSN 1662-5137
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Frontiers in Cellular Neuroscience, Issue 13, 2019, ISSN 1662-5102
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Neurobiology of Aging, Issue 81, 2019, Page(s) 157-165, ISSN 0197-4580
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Network Neuroscience, Issue 3/4, 2019, Page(s) 994-1008, ISSN 2472-1751
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Medical Image Analysis, Issue 55, 2019, Page(s) 197-215, ISSN 1361-8415
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Frontiers in Neuroinformatics, Issue 13, 2019, ISSN 1662-5196
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Biochemical Society Transactions, Issue 47/3, 2019, Page(s) 909-918, ISSN 0300-5127
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PLOS Computational Biology, Issue 15/4, 2019, Page(s) e1006975, ISSN 1553-7358
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Photonics, Issue 6/3, 2019, Page(s) 92, ISSN 2304-6732
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International Journal of Computer Assisted Radiology and Surgery, Issue 14/11, 2019, Page(s) 1881-1889, ISSN 1861-6410
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Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
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Frontiers in Neurology, Issue 10, 2019, ISSN 1664-2295
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Neuron, Issue 102/4, 2019, Page(s) 735-744, ISSN 0896-6273
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Science, Issue 364/6442, 2019, Page(s) eaaw0445, ISSN 0036-8075
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PLOS Computational Biology, Issue 15/6, 2019, Page(s) e1007051, ISSN 1553-7358
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The Cerebellum, Issue 18/2, 2019, Page(s) 266-286, ISSN 1473-4222
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IEEE Transactions on Biomedical Circuits and Systems, Issue 13/6, 2019, Page(s) 1338-1350, ISSN 1932-4545
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The Journal of Neuroscience, Issue 39/45, 2019, Page(s) 8900-8915, ISSN 0270-6474
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Science, Issue 367/6473, 2020, Page(s) 83-87, ISSN 0036-8075
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Bioinformatics, 2020, ISSN 1367-4803
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Frontiers in Systems Neuroscience, Issue 13, 2019, ISSN 1662-5137
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Genome Medicine, Issue 12/1, 2020, ISSN 1756-994X
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Frontiers in Neurology, Issue 10, 2019, ISSN 1664-2295
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Human Brain Mapping, Issue 40/17, 2019, Page(s) 5142-5154, ISSN 1065-9471
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Frontiers in Psychiatry, Issue 10, 2019, ISSN 1664-0640
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Scientific Reports, Issue 10/1, 2020, ISSN 2045-2322
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Biological Psychiatry, Issue 87/3, 2020, Page(s) 282-293, ISSN 0006-3223
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Network Neuroscience, Issue 3/4, 2019, Page(s) 1038-1050, ISSN 2472-1751
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Cerebral Cortex, Issue 30/3, 2019, Page(s) 952-968, ISSN 1047-3211
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PLOS Computational Biology, Issue 15/5, 2019, Page(s) e1006580, ISSN 1553-7358
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The Journal of Neuroscience, Issue 40/13, 2020, Page(s) 2663-2679, ISSN 0270-6474
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BMC Bioinformatics, Issue 20/1, 2019, ISSN 1471-2105
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Cell Reports, Issue 30/10, 2020, Page(s) 3492-3505.e5, ISSN 2211-1247
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Communications Physics, Issue 2/1, 2019, ISSN 2399-3650
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Frontiers in Molecular Neuroscience, Issue 12, 2019, ISSN 1662-5099
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IEEE Robotics and Automation Letters, Issue 5/1, 2020, Page(s) 80-87, ISSN 2377-3766
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Frontiers in Neurorobotics, Issue 13, 2019, ISSN 1662-5218
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IEEE Transactions on Cybernetics, 2019, Page(s) 1-14, ISSN 2168-2267
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Cerebral Cortex, Issue 30/6, 2020, Page(s) 3451-3466, ISSN 1047-3211
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International Journal of Molecular Sciences, Issue 21/1, 2020, Page(s) 216, ISSN 1422-0067
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eLife, Issue 9, 2020, ISSN 2050-084X
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NeuroImage, Issue 213, 2020, Page(s) 116738, ISSN 1053-8119
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Frontiers in Neuroscience, Issue 12, 2018, ISSN 1662-453X
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Frontiers in Neuroanatomy, Issue 14, 2020, ISSN 1662-5129
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Frontiers in Cellular Neuroscience, Issue 14, 2020, ISSN 1662-5102
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Methods and Protocols, Issue 3/1, 2020, Page(s) 14, ISSN 2409-9279
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Neural Networks, Issue 119, 2019, Page(s) 200-213, ISSN 0893-6080
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Frontiers in Neuroinformatics, Issue 13, 2019, ISSN 1662-5196
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Brain Structure and Function, Issue 225/1, 2020, Page(s) 19-31, ISSN 1863-2653
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Frontiers in Physiology, Issue 10, 2019, ISSN 1664-042X
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Scientific Reports, Issue 10/1, 2020, ISSN 2045-2322
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Nature Publishing Group
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Frontiers in Neuroscience, Issue 13, 2019, ISSN 1662-453X
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Nature Communications, Issue 9/1, 2018, ISSN 2041-1723
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Frontiers in Cellular Neuroscience, Issue 13, 2019, ISSN 1662-5102
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Frontiers in Integrative Neuroscience, Issue 13, 2019, ISSN 1662-5145
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Nature Communications, Issue 11/1, 2020, ISSN 2041-1723
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Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, Issue 378/2166, 2020, Page(s) 20190052, ISSN 1364-503X
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Frontiers in Synaptic Neuroscience, Issue 11, 2019, ISSN 1663-3563
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Journal of Biomedical Optics, Issue 24/10, 2019, Page(s) 1, ISSN 1083-3668
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Neural Networks, Issue 121, 2020, Page(s) 339-355, ISSN 0893-6080
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eLife Sciences Publications
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JAMA Psychiatry, Issue 76/4, 2019, Page(s) 435, ISSN 2168-622X
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Frontiers in Neuroscience, Issue 12, 2018, ISSN 1662-453X
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European Review, Issue 27/1, 2019, Page(s) 54-65, ISSN 1062-7987
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Frontiers in Neuroscience, Issue 12, 2018, ISSN 1662-453X
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Frontiers in Cellular Neuroscience, Issue 12, 2018, ISSN 1662-5102
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Frontiers in Neurology, Issue 9, 2018, ISSN 1664-2295
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Cortex, 2018, ISSN 0010-9452
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Philosophy, Ethics, and Humanities in Medicine, Issue 13/1, 2018, ISSN 1747-5341
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Interface Focus, Issue 8/4, 2018, Page(s) 20180007, ISSN 2042-8898
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Health Security, Issue 16/2, 2018, Page(s) 140-142, ISSN 2326-5094
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Health Care Ethics USA | Spring 2018, 2018, ISSN 1072-5490
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NeuroImage, Issue 195, 2019, Page(s) 104-112, ISSN 1053-8119
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Trends in Cognitive Sciences, Issue 22/7, 2018, Page(s) 598-610, ISSN 1364-6613
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European Journal of Neuroscience, Issue 49/6, 2019, Page(s) 768-783, ISSN 0953-816X
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The Journal of Physical Chemistry B, Issue 123/6, 2019, Page(s) 1294-1301, ISSN 1520-6106
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Neuron, Issue 100/1, 2018, Page(s) 19-36, ISSN 0896-6273
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Creativity Research Journal, Issue 30/3, 2018, Page(s) 249-255, ISSN 1040-0419
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Cerebral Cortex, Issue 29/11, 2019, Page(s) 4646-4653, ISSN 1047-3211
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Current Biology, Issue 28/19, 2018, Page(s) 3065-3074.e6, ISSN 0960-9822
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Regenerative Medicine, Issue 13/5, 2018, Page(s) 559-579, ISSN 1746-0751
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Neuropharmacology, Issue 146, 2019, Page(s) 74-83, ISSN 0028-3908
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International Journal of Neural Systems, Issue 28/09, 2018, Page(s) 1850020, ISSN 0129-0657
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BMC Neuroscience, Issue 20/S1, 2019, ISSN 1471-2202
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BioMed Central
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BioRxiv, 2019, ISSN 0000-0000
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Cold Spring Harbor Laboratory
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NICE '20: Proceedings of the Neuro-inspired Computational Elements Workshop, 2020
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ACM
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Proceedings of the Neuro-inspired Computational Elements Workshop, 2020, Page(s) 1-4, ISBN 9781450377188
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ACM
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2017 27th International Conference on Field Programmable Logic and Applications (FPL), 2017, Page(s) 1-8, ISBN 978-9-0903-0428-1
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2017 IEEE International Symposium on Circuits and Systems (ISCAS), 2017, Page(s) 1-4, ISBN 978-1-4673-6853-7
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2017 IEEE 11th International Conference on Application of Information and Communication Technologies (AICT), 2017, Page(s) 1-6, ISBN 978-1-5386-0501-1
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2019 27th Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP), 2019, Page(s) 283-290, ISBN 978-1-7281-1644-0
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2019 27th Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP), 2019, Page(s) 274-282, ISBN 978-1-7281-1644-0
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IEEE
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2019 27th Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP), 2019, Page(s) 291-298, ISBN 978-1-7281-1644-0
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2018 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS), 2018, Page(s) 1-9, ISBN 978-1-5386-8094-0
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IEEE
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10.1109/iros.2018.8594019
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2018 7th IEEE International Conference on Biomedical Robotics and Biomechatronics (Biorob), 2018, Page(s) 291-298, ISBN 978-1-5386-8183-1
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Proceedings of the 25th European MPI Users' Group Meeting on - EuroMPI'18, 2018, Page(s) 1-8, ISBN 9781-450364928
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2018 7th IEEE International Conference on Biomedical Robotics and Biomechatronics (Biorob), 2018, Page(s) 260-267, ISBN 978-1-5386-8183-1
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2018 18th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID), 2018, Page(s) 163-172, ISBN 978-1-5386-5815-4
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IEEE
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2018 IEEE 17th International Conference on Cognitive Informatics & Cognitive Computing (ICCI*CC), 2018, Page(s) 111-116, ISBN 978-1-5386-3360-1
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Proceedings of the 15th ACM International Conference on Computing Frontiers - CF '18, 2018, Page(s) 216-219, ISBN 9781-450357616
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2018 IEEE 25th Symposium on Computer Arithmetic (ARITH), 2018, Page(s) 37-44, ISBN 978-1-5386-2613-9
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IEEE
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FastPath 2019 - Sixth International Workshop on Performance Analysis of Machine Learning Systems, 2019
Publisher:
IBM Research
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Lorenzo Ferretti, Giovanni Ansaloni, Laura Pozzi, Amir Aminifar, David Atienza, Leila Cammoun, Philippe Ryvlin
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2019 Design, Automation & Test in Europe Conference & Exhibition (DATE), 2019, Page(s) 948-951, ISBN 978-3-9819263-2-3
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2019 Design, Automation & Test in Europe Conference & Exhibition (DATE), 2019, Page(s) 764-769, ISBN 978-3-9819263-2-3
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2018 International Conference on Compilers, Architectures and Synthesis for Embedded Systems (CASES), 2018, Page(s) 1-2, ISBN 978-1-5386-5564-1
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IEEE
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2018 International Conference on Compilers, Architectures and Synthesis for Embedded Systems (CASES), 2018, Page(s) 1-2, ISBN 978-1-5386-5564-1
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Proceedings of the 16th International Conference on Cognitive Modeling (ICCM 2018), 2018, Page(s) 31-36, ISBN 978-0-9985082-2-1
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PMLR, 2018, ISSN 2640-3498
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Proceedings of Machine Learning Research
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2019 19th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID), 2019, Page(s) 321-330, ISBN 978-1-7281-0912-1
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Proceedings of the 23rd International Database Applications & Engineering Symposium on - IDEAS '19, 2019, Page(s) 1-9, ISBN 9781-450362498
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Proceedings of the 25th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining - KDD '19, 2019, Page(s) 425-435, ISBN 9781-450362016
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IEEE Xplore
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2018 IFIP/IEEE International Conference on Very Large Scale Integration (VLSI-SoC), 2018, Page(s) 19-24, ISBN 978-1-5386-4756-1
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2019 IEEE International Conference on Big Data (Big Data), 2019, Page(s) 433-440, ISBN 978-1-7281-0858-2
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2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2019, Page(s) 4549-4553, ISBN 978-1-5386-1311-5
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Intellectual Property Rights
Application/Publication number:
EP
17826212
Date:
2017-12-19
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