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Human Brain Project Specific Grant Agreement 1

Livrables

D11.5.1 Education Programme Report

WPs involved: WP 11.5 This report will provide a detailed description of the HBP Curriculum as well as evaluation, statistics, conclusions and outlook of the HBP Education Programme tasks.

D 2.7.5 CDP6 Components Report for SGA1 M13-M24

The report will include a detailed overview of the components and products delivered and related outcomes for M13-M24 of SGA1. The tasks contributing to the CDP will be mentioned and responsible for the results.

D 7.6.1 High-Performance Analytics and Computing Platform specification update

"WPs involved: WP7.1, WP7.2, WP7.3, WP7.4, WP7.5 & WP7.6 This document is an update of the Ramp-Up Phase Deliverable D7.7.2 ""High Performance Computing Platform v1 - specification document"". It will provide a detailed specification of the High-Performance Analytics and Computing Platform at the end of SGA1."

D 2.7.1 SP2 Human Brain Organisation - Results for SGA1 Period 1

WPs involved: WP2.1, WP2.2., WP2.3, WP2.4, WP2.5, WP2.6 & WP2.7 Summary of SP Results for M1-12, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications • SP Roadmap for SGA2, validated by other SPs receiving inputs from your SP NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. COULD INCLUDE: Research results, tools and methods and contribution to initiate the platforms (for Period 1): Description of the data, tools and methods produced and developed in SP2 during the SGA1 phase and their contribution to the platforms. This package will include genetic factors contributing to at least one morphological / cognitive factor, genetic variants and individual genomic profiles, new cytoarchitectonic probabilistic maps of 5 or more human brain regions, mean densities of 15 different receptors in human anterior, mid- and posterior cingulate cortex, early extrastriate and higher visual areas, receptor distributions for selected areas of an initial native Big Brain parcellation, mapped U-fibre bundles and their microstructure, electrophysiological profiles and matching morphologies, massive mapping data from the 12 subjects of the IBC cohort, image-based meta-analysis of multiple functional datasets handled by HBP, framework for multi-modal mapping for one initial region of interest, systematic multi-modal mapping and characterization for at least 3 ROIs, differential laminar‐specific fMRI signals along feedforward ‐and feedback pathways in monkey and humans, model of spatial and feature-based attention effects at the level of cortical columns and layers, excitatory and inhibitory synaptic connections in rodent neocortex and their neuromodulation, effect of ventral midbrain stimulation on cortical representations in monkey, sulcus‐based alignment of cytoarchitectonic and diffusion‐based parcellations, connectivity matrix of the cytoarchitectonic and diffusion‐based parcellations, EEG recording of the first 30 patients localized relative to the HBP connectome nodes, initial prototype of shape model and inter-individual spatial alignment, automatic extraction and identification of sulci from MRI, matching between small and large FoV PLI, HBP workflow for computing cell counts in high-resolution microscopic data.

D 12.5.3 Report on Ethics and Society activities

WPs involved: WP12.1, WP12.2, WP12.3, WP12.4 & WP12.5 This is the second SP12 report on Ethics and Society activities during SGA-1, detailing the main outcomes and results achieved by SP12 work packages in M12-24.

D 8.6.1 SP8 Medical Informatics Platform –Architecture and Deployment Plan

WPs involved: WP8.1, WP8.2, WP8.3, WP8.4, WP8.5 & WP8.6 • Architecture: Description of overall architecture for Medical Informatics Platform, providing a detailed plan for how “the architecture split designs will now converge” specifying who is responsible for what and when it must be done. • Deployment: Detailed deployment plan, specifying how difficulties encountered in deploying MIP to first five hospitals will be overcome specifying who is responsible for what and when it must be done. • Identify dependencies between architecture and deployment.

D 3.5.2 SP3 Systems and Cognitive Neuroscience - Results for SGA1 Period 2

WPs involved: WP3.1, WP3.2, WP3.3, WP3.4 WP3.5 & WP3.6 Summary of SP Results for M13-24, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. INCLUDE: • WP3.1 input: Studies in human brain imaging, rodent electrophysiology, optogenetics, and computational modelling of feedforward and feedback processing in the context of object recognition, and reinforcement learning. This report will include data on improvements made in modelling, experiments, techniques, and reports links to data repositories, use of Platforms as well as collaboration in Co-design projects. • WP3.2 input Period 1: Slow Wave Activity experiments, models and simulations and interaction with HBP platforms. This report will include usage statistics, TRLs, collaboration in Co-design projects and updates on data accessibility. • WP3.3 input Period 1: Studies in human brain imaging, rodent electrophysiology, optogenetics, computational modelling and robotics of concerning Episodic memory and multisensory integration, with Robot demos. This report will include data on improvements made in experiments & measurement techniques, use of the tools by colleagues in the field and/or in HBP, links to data repositories, collaboration in Co-design projects, and TRLs. • WP3.4 input Period 1: Studies in electrophysiology, imaging and behaviour in rodents and humans, and multilevel computational modelling. This report will include methods for assessing consciousness and testing of theories of consciousness; links to data repositories, collaboration in Co-design projects, use of platforms, usage statistics for tools delivered. • WP3.5 input Period 1: Data usage plan and impact of data on models. A detailed plan of data usage and the impact of data on models for the data will be generated • WP3.6 input Period 1: Scientific report on SP3 contributions to the development of the infrastructure and co-design projects. This report will include the development of network simulation models, data analysis methods and other tools, as well as constraints and requirements for further applications using HBP platforms, and usage statistics for tools delivered.

D 12.5.1 Report on Ethics and Society activities

WPs involved: WP12.1, WP12.2, WP12.3, WP12.4 & WP12.5 This is the first SP12 report on Ethics and Society activities during SGA-1, detailing the main outcomes and results achieved by SP12 work packages in M1-12.

D 11.3.3 HBP Software Engineering and Quality Assurance Approach

WPs involved: WP11.2, WP11.3, WP5.6, WP6.5, WP7.5, WP8.6, WP9.5 & WP10.7 • This will describe the overall software engineering and quality assurance approach (covering both agile and codesign processes) This will update related content in System Engineering Package sent by PCO (Jeff Muller) to the EC in March 2016 and address feedback points received from the EC. NOTE: PEER REVIEW REQUIRED

D 5.8.3 SP5 Neuroinformatics Platform - Results for SGA1 Period 2

Summary of SP Results for M13-24, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP Products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. INCLUDES: Research results, tools and methods and contribution to initiate the Platforms (for Period 2)

D 4.7.1 SP4 Theoretical Neuroscience - Results for SGA1 Period 1

WPs involved: WP4.1, WP4.2, WP4.3, WP4.4, WP4.5 & WP4.7 Summary of SP Results for M1-12, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications • SP Roadmap for SGA2, validated by other SPs receiving inputs from your SP NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. COULD INCLUDE: • WP4.1 Period 1: Report of publications on theoretical approaches that bridge scales for model types, for brain signals and for model scales. Report of publications on theoretical approaches that bridge scales for model types (detailed vs. simplified), for brain signals (cellular vs. large-scale) and for model scales (cellular vs populations). • WP4.2 Period 1: Implementation of multi-area model of macaque visual cortex relating macroscopic brain connectivity to the microscopic connectivity. Implementation of multi-area model of macaque visual cortex relating macroscopic brain connectivity to the microscopic connectivity available to consortium through collaboratory and documented. • WP4.3 Period 1: Report of publications on theoretical approaches that relate learning and memory to synaptic plasticity. Report of publications on theoretical approaches that relate learning and memory to synaptic plasticity. • WP4.4 Period 1: Models of neural and large-scale brain activity to understand the constraints imposed by structural connectivity on their behaviour with applications to resting-state brain activity, vision, motor-control and spatial navigation. WP 4.4 will create models of neural and large-scale brain activity to understand the constraints imposed by structural connectivity on their behaviour with applications to resting-state brain activity, vision, motor-control and spatial navigation. • WP4.5 Period 1: Report on first use case(s) for the comparison of brain activity data and model simulation(s). Report on first use case(s) for the comparison of brain activity data and model simulation

D 4.7.3 CDP5 Components Report for SGA1 M13-M24

The report will include a detailed overview of the components and products delivered and related outcomes for M13-M24 of SGA1. The tasks contributing to the CDP will be mentioned and responsible for the results.

D 12.5.4 Second Opinions Report

WPs involved: WP12.1, WP12.2, WP12.3, WP12.4 & WP12.5 This is the second “opinions” reports formulating SP12 observations and recommendations about ethical and social issues arising during the course of HBP

D 2.7.3 CDP3 Components Report for SGA1 M13-M24

The report will include a detailed overview of the components and products delivered and related outcomes for M13-M24 of SGA1. The tasks contributing to the CDP will be mentioned and responsible for the results.

D 4.7.2 SP4 Theoretical Neuroscience - Results for SGA1 Period 2

WPs involved: WP4.1, WP4.2, WP4.3, WP4.4, WP4.5 & WP4.7 Summary of SP Results for M1-12, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. INCLUDE: • WP4.1: Report of publications on theoretical approaches that bridge scales for model types, for brain signals and for model scales. Report of publications on theoretical approaches that bridge scales for model types (detailed vs. simplified), for brain signals (cellular vs. large-scale) and for model scales (cellular vs populations). • WP4.2: Implementation of multi-area model of macaque visual cortex relating macroscopic brain connectivity to the microscopic connectivity. Implementation of multi-area model of macaque visual cortex relating macroscopic brain connectivity to the microscopic connectivity available to consortium through collaboratory and documented. • WP4.3: Report of publications on theoretical approaches that relate learning and memory to synaptic plasticity. Report of publications on theoretical approaches that relate learning and memory to synaptic plasticity. • WP4.4: Models of neural and large-scale brain activity to understand the constraints imposed by structural connectivity on their behaviour with applications to resting-state brain activity, vision, motor-control and spatial navigation. WP 4.4 will create models of neural and large-scale brain activity to understand the constraints imposed by structural connectivity on their behaviour with applications to resting-state brain activity, vision, motor-control and spatial navigation. • WP4.5: Report on first use case(s) for the comparison of brain activity data and model simulation(s). Report on first use case(s) for the comparison of brain activity data and model simulation(s)..

D 9.5.2 SP9 Neuromorphic Computing Platform - Results for SGA1 Period 2

WPs involved: WP9.1, WP9.2, WP9.3, WP9.4 & WP9.5 Summary of SP Results for M13-24, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. INCLUDE: • Neuromorphic Computing Platform: Status description: Description of the status of the full range of the neuromorphic computing platform (standalone systems and big platform systems) including the software stack and a guidebook update release.

D 1.5.2 SP1 Mouse Brain Organisation - Results for SGA1 Period 2

WPs involved: WP1.1, WP1.2, WP1.3, WP1.4 & WP1.5 Summary of SP Results for M13-24, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. INCLUDE: • Brain Atlas data package. This data, which will be deposited in the HBP Brain Atlas, will include: Maps of the vasculature; Whole-brain maps of different cellular types based on gene expression; Microcircuitry analysis, proteins and receptor distributions and fibre architecture; Maps of cellular distributions, long-range axonal projections, and synaptic proteins; reconstructed morphologies of major neuron types; Whole-brain activation maps; Spatial organization principles in brain activation; Functional maps of cortical activity. • Brain Modelling data package. This package will include strategic data on quantitative description of synaptic connections on neurons; numbers, distributions and relative densities of cells in selected regions and where possible across the whole brain; statistical parameters characterizing particular cell types and spatial arrangements between neurons, glia and blood vessels; a high-resolution quantitative synaptic map of exemplar brain regions; EM blocks scans and volume analysis of exemplar brain regions with quantification of the neuropil organization; microcircuit analysis; functional maps of brain activation; morphological and physiological comparative studies of neurons between rodent and human.

D 12.5.2 First Opinions Report

WPs involved: WP12.1, WP12.2, WP12.3, WP12.4 & WP12.5 This is the first “opinions” reports formulating SP12 observations and recommendations about ethical and social issues arising during the course of HBP.

D 3.5.1 SP3 Systems and Cognitive Neuroscience - Results for SGA1 Period 1

WPs involved: WP3.1, WP3.2, WP3.3, WP3.4 WP3.5 & WP3.6 Summary of SP Results for M1-12, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications • SP Roadmap for SGA2, validated by other SPs receiving inputs from your SP NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. COULD INCLUDE: • WP3.1 input Period 1: Studies in human brain imaging, rodent electrophysiology, optogenetics, and computational modelling of feedforward and feedback processing in the context of object recognition, and reinforcement learning. This report will include data on improvements made in modelling, experiments, techniques, and reports links to data repositories, use of Platforms as well as collaboration in Co-design projects. • WP3.2 input Period 1: Slow Wave Activity experiments, models and simulations and interaction with HBP platforms. This report will include usage statistics, TRLs, collaboration in Co-design projects and updates on data accessibility. • WP3.3 input Period 1: Studies in human brain imaging, rodent electrophysiology, optogenetics, computational modelling and robotics of concerning Episodic memory and multisensory integration, with Robot demos. This report will include data on improvements made in experiments & measurement techniques, use of the tools by colleagues in the field and/or in HBP, links to data repositories, collaboration in Co-design projects, and TRLs. • WP3.4 input Period 1: Studies in electrophysiology, imaging and behaviour in rodents and humans, and multilevel computational modelling. This report will include methods for assessing consciousness and testing of theories of consciousness; links to data repositories, collaboration in Co-design projects, use of platforms, usage statistics for tools delivered. • WP3.5 input Period 1: Data usage plan and impact of data on models. A detailed plan of data usage and the impact of data on models for the data will be generated • WP3.6 input Period 1: Scientific report on SP3 contributions to the development of the infrastructure and co-design projects. This report will include the development of network simulation models, data analysis methods and other tools, as well as constraints and requirements for further applications using HBP platforms, and usage statistics for tools delivered.

D 6.5.3 CDP2 Components Report for SGA1 M13-M24

The report will include a detailed overview of the components and products delivered and related outcomes for M13-M24 of SGA1. The tasks contributing to the CDP will be mentioned and responsible for the results.

D 4.6.2 WP4.6 EITN - Activity Report SGA1 Period 2

WPs involved: WP4.6 European Institute for Theoretical Neuroscience (EITN) activity report for M13-24

D 11.3.1 HBP Collaboratory Architecture

WPs involved: WP11.2, WP11.3, & WP7.5 • HBP Collaboratory Specification This will update related content in System Engineering Package sent by PCO (Jeff Muller) to the EC in March 2016 and address feedback points received from the EC. NOTE: PEER REVIEW REQUIRED

D 1.5.3 Detailed plan of data usage and the impact of generated data on models

WPs involved: WP1.1, WP1.2, WP1.3, WP1.4 & WP1.5 From M1 to M24, a detailed plan for data usage via cross-SP working meetings will be drawn up. We will provide strategic structural and functional data to model and simulate the four major brain circuits and to set up their use in modelling at sub-cellular, cellular and circuit levels. Due to the possible constraints to produce new data in terms of time and resources, the data generated will be sent to the platforms as it is produced, i.e., not only the initial (and also intermediate), but also incomplete datasets to test all the pipelines. The identification of the gaps between what data is available and what data is needed will be implemented following a scale of priorities for SP2, SP3, SP4, SP5 and SP6. The modelling work and the coordination with the relevant SPs will ensure that data generated is strategic and is used in HBP models. This strategic data plan will be delivered in M24 and will be implemented in the SGA2 and will continue throughout the project.

D5.8.1 Strategy and Architecture for HBP data viewers

New Deliverable requested by EC Feedback from Review of 24 Oct 2016.

D 11.2.4 Report on cumulative expenditure incurred

In line with the reporting streamlining, this document will provide general cost incurred by the Consortium

D 2.7.2 SP2 Human Brain Organisation - Results for SGA1 Period 2

WPs involved: WP2.1, WP2.2., WP2.3, WP2.4, WP2.5, WP2.6 & WP2.7 Summary of SP Results for M13-24, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. INCLUDE: Research results, tools and methods and contribution to initiate the platforms (for Period 2): This data, which will be deposited in the HBP Brain Atlas, will include: Maps of the vasculature; Microcircuitry analysis, proteins and receptor distributions and fibre architecture; Maps of cellular distributions and synaptic proteins; reconstructed morphologies of major neuron types; Functional maps of cortical activity.

D 10.7.1 Release Plan for the NRP for SGA1 and project implementation proposal

WPs involved: WP10.1, WP10.2, WP10.3, WP10.4, WP10.5 & WP10.6 This document will describe the release plan for the SP10 Platform and will detail out the project implementation proposal. It will receive input from WP 10.1, 10.2, 10.3, 10.4, 10.5 and 10.6.

D 1.5.4 CDP1 Components Report for SGA1 M13-M24

The report will include a detailed overview of the components and products delivered and related outcomes for M13-M24 of SGA1. The tasks contributing to the CDP will be mentioned and responsible for the results.

D 5.6.1 Revised SP5 work plan for SGA1 (DPIT)

WPs involved: WP11.3, WP5.1, WP5.2, WP5.3, WP5.4, WP5.5 & WP5.6 plus WP1.5, WP2.7, WP3.5, WP4.5, WP6.5, WP7.6, WP8.6, WP9.5 & WP10.7 The SP5 Month 6 Deliverable D5.6.1 Revised SP5 work plan for SGA1 will form the basis for a special review as agreed between the EC and the HBP. The revisions in D5.6.1 are expected to require an amendment to the SGA1. The Deliverable needs to be accepted by the SIB prior to submission. The Month 6 Deliverable D5.6.1 will replace the Month 3 Deliverable foreseen earlier in the SGA negotiations. D5.6.1 will include: - Data Flow and Project Lifecycle: a listing of data related components from all use cases and datasets, from all SPs and CDPs, in the Project, documenting each Task/component. - A reviewed and agreed SP5 architecture, identifying all components, how they interact, who is responsible for which Task and component, and what each one does. It should cover both tools and supporting infrastructure. - A revised management and implementation plan for SP5 and data-related parts of other SPs, including a revised and expanded list of SP5 Milestones and Deliverables, featuring a visual roadmap / timetable. - A global HBP data-related work breakdown structure and PERT chart with prioritized workflows for SP5 in interaction with the entire HBP. - A comprehensive data curation plan for the entire HBP. - The division of responsibilities, setting out what is done by SP5 and what is done by other SPs. - A description of FeDaPP, its elements and its role in the HBP, along with its interaction with the NIP. - Plans for interaction with external partners. - A budget plan, allocating both money and manpower and broken down, by SP, WP, Task and Partner.

D 9.5.1 SP9 Neuromorphic Computing Platform - Results for SGA1 Period 1

WPs involved: WP9.1, WP9.2, WP9.3, WP9.4 & WP9.5 Summary of SP Results for M1-12, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications • SP Roadmap for SGA2, validated by other SPs receiving inputs from your SP NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. COULD INCLUDE: • Neuromorphic Computing Platform: Intermediate Status description report (Period 1). Description of the status of the full range of the neuromorphic computing platform (standalone systems and big platform systems) including the software stack and a guidebook update release.

D 5.6.2 HBP Platform Architecture (DPIT)

WPs involved: WP5.6, WP7.5, WP11.2 & WP11.3 Overall platform architecture of HBP, including: • FedApp.and its funding (EC & other sources) • Target TRL levels for each platform • RI construction plan, with detailed work breakdown structure • RI user support This will update related content in System Engineering Package sent by PCO (Jeff Muller) to the EC in March 2016 and address feedback points received from the EC. NOTE: PEER REVIEW REQUIRED

D 1.5.1 SP1 Mouse Brain Organisation - Results for SGA1 Period 1

WPs involved: WP1.1, WP1.2, WP1.3, WP1.4 & WP1.5 Summary of SP Results for M1-12, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications • SP Roadmap for SGA2, validated by other SPs receiving inputs from your SP NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. COULD INCLUDE: • Brain Atlas data package (Period 1). This data, which will be deposited in the HBP Brain Atlas, will include: Maps of the vasculature; Whole-brain maps of different cellular types based on gene expression; Microcircuitry analysis, proteins and receptor distributions and fibre architecture; Maps of cellular distributions, long-range axonal projections, and synaptic proteins; reconstructed morphologies of major neuron types; Whole-brain activation maps; Spatial organization principles in brain activation; Functional maps of cortical activity. • Brain Modelling data package (Period 1). This package will include strategic data on quantitative description of synaptic connections on neurons; numbers, distributions and relative densities of cells in selected regions and where possible across the whole brain; statistical parameters characterizing particular cell types and spatial arrangements between neurons, glia and blood vessels; a high-resolution quantitative synaptic map of exemplar brain regions; EM blocks scans and volume analysis of exemplar brain regions with quantification of the neuropil organization; microcircuit analysis; functional maps of brain activation; morphological and physiological comparative studies of neurons between rodent and human.

D 4.6.1 WP4.6 EITN - Activity report SGA1 Period 1

WPs involved: WP4.6 European Institute for Theoretical Neuroscience (EITN) activity report for M1-12

D 11.2.1 Central Services IT / Web Tools Specifications

WPs involved: WP11.2, WP11.3, WP11.4 & WP11.5 This document will compile the specifications for the following IT / Web Tools: 1. HBP public website redesign 2. Education Programme website redesign 3. ERP knowledge management tool for PCO Explain ecosystem of PCO IT coordination tools

D 2.7.4 CDP4 Components Report for SGA1 M13-M24

The report will include a detailed overview of the components and products delivered and related outcomes for M13-M24 of SGA1. The tasks contributing to the CDP will be mentioned and responsible for the results.

D 8.6.4 SP8 Medical Informatics Platform – MIP validation plan

SP8 Medical Informatics Platform – MIP validation plan

D 5.8.2 SP5 Neuroinformatics Platform - Results for SGA1 Period 1

Summary of SP Results for M1-12, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP Products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications • SP Roadmap for SGA2, validated by other SPs receiving inputs from your SP NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. COULD INCLUDE: Research results, tools and methods and contribution to initiate the Platforms (for Period 1)

D 8.6.2 SP8 Medical Informatics Platform - Results for SGA1 Period 1

WPs involved: WP8.1, WP8.2, WP8.3, WP8.4, WP8.5 & WP8.6 Summary of SP Results for M1-12, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications • SP Roadmap for SGA2, validated by other SPs receiving inputs from your SP NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. COULD INCLUDE: • Medical Informatics Platform v1.5 (Period 1). This deliverable will consist of the second formal release of the Medical Informatics Platform and related documentation (Release notes, user guide, technical documentation, data management plan and deployment plan). The platform, accessible to end-users via the HBP Collaboratory, will provide access to the clinical infrastructure (WP8.1). The platform will provide access to the user community (neuroscientists, clinicians, data scientists) thought web apps and microservices (WP8.5) to the tools developed in WP8.3/8.4/8.5. The platform will also include services for engaging the general public.

D 10.7.3 SP10 Neurorobotics Platform - Results for SGA1 Period 2

WPs involved: WP10.1, WP10.2, WP10.3, WP10.4, WP10.5 & WP10.6 Summary of SP Results for M13-24, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. INCLUDE: • Public release NR Platform and software with support for physics-based light, musculoskeletal robot designer, graphical brain-body integrator. This deliverable will point to the public release of the SP10 platform and all corresponding software packages at the end of the SGA1.

D 8.6.3 SP8 Medical Informatics Platform - Results for SGA1 Period 2

WPs involved: WP8.1, WP8.2, WP8.3, WP8.4, WP8.5 & WP8.6 Summary of SP Results for M13-24, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. INCLUDE: • Medical Informatics Platform v2 (Period 2).This deliverable will consist of the second formal release of the Medical Informatics Platform and related documentation (Release notes, user guide, technical documentation, data management plan and deployment plan). The platform, accessible to end-users via the HBP Collaboratory, will provide access to the clinical infrastructure (WP8.1). The platform will provide access to the user community (neuroscientists, clinicians, data scientists) thought web apps and microservices (WP8.5) to the tools developed in WP8.3/8.4/8.5. The platform will also include services for engaging the general public.

D 6.5.1 SP6 Brain Simulation Platform - Results for SGA1 Period 1

WPs involved: WP6.1, WP6.2, WP6.3, WP6.4 & WP6.5 Summary of SP Results for M1-12, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications • SP Roadmap for SGA2, validated by other SPs receiving inputs from your SP NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website.

D 7.6.2 SP7 High-Performance Analytics and Computing Platform - Results for SGA1 Period 1

WPs involved: WP7.1, WP7.2, WP7.3, WP7.4, WP7.5 & WP7.6 Summary of SP Results for M1-12, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications • SP Roadmap for SGA2, validated by other SPs receiving inputs from your SP NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. COULD INCLUDE: • High Performance Analytics and Computing Platform v1.5 (Period 1): This deliverable will consist of the second formal release of the High Performance Analytics and Computing Platform and related documentation. The platform, accessible to end users through the HBP Collaboratory, will provide the neuroscience community with access to federated HPC and Cloud resources, common developer and software deployment services, SimLab-style support for the porting of applications to novel hardware architectures, the simulator NEST as a service and user support. It will incorporate results from WP7.1, WP7.2, WP7.3 and WP7.4.

D 10.7.2 SP10 Neurorobotics Platform - Results for SGA1 Period 1

WPs involved: WP10.1, WP10.2, WP10.3, WP10.4, WP10.5 & WP10.6 Summary of SP Results for M1-12, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications • SP Roadmap for SGA2, validated by other SPs receiving inputs from your SP NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. INCLUDE: • NRP roadmap for SGA2: This document will describe the roadmap for the SP10 platform in SGA2 • Effective methods for transferring simulated control architectures to real robots calibration, cross-compilation and remote control. • Public release of NR platform and software with partial implementation of soft body collision, muscles, physics and HMD/CAVE visualization.

D 6.5.2 SP6 Brain Simulation Platform - Results for SGA1 Period 2

WPs involved: WP6.1, WP6.2, WP6.3, WP6.4 & WP6.5 Summary of SP Results for M13-24, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. INCLUDE: • Brain Simulation Platform v2: This deliverable will consist of the second formal release of the Brain Simulation Platform and related documentation. The Platform, accessible to end-users via the HBP Collaboratory, will provide access to tools, apps and services developed in WP6.3 and WP6.4 (based on co-design drivers from WP6.1 and WP6.2, as well as CDP1 and CDP2). • Scaffold model Collabs release v2: This deliverable will expose the latest releases of models and simulations of the scaffold modelling activities of WP6.1 and WP6.2 in their respective Collabs, and showcase the underlying workflows of the Brain Simulation Platform. • CDP2 Collab release v2: CDP2 Deliverable: This deliverable will expose the models and simulations of CDP2 in the respective Collab and showcase the underlying workflows of the Brain Simulation Platform and other platforms.

Publications

High-Performance Scientific Computing

Auteurs: Edoardo Di Napoli, Marc-André Hermanns, Hristo Iliev, Andreas Lintermann, Alexander Peyser
Publié dans: Lecture Notes in Computer Science, 2017, ISBN 978-3-319-53862-4
Éditeur: Springer International Publishing
DOI: 10.1007/978-3-319-53862-4

Neurotechnology and Direct Brain Communication - New insights and responsibilities concerning speechless but communicative subjects

Auteurs: Farisco M. Evers K.
Publié dans: 2016, ISBN 9781-315723983
Éditeur: Routledge
DOI: 10.4324/9781315723983

26th Annual Computational Neuroscience Meeting (CNS*2017): Part 1

Auteurs: Sue Denham, Panayiota Poirazi, Erik De Schutter, Karl Friston, Ho Ka Chan, Thomas Nowotny, Dongqi Han, Sungho Hong, Sophie Rosay, Tanja Wernle, Alessandro Treves, Sarah Goethals, Romain Brette, Tomas Van Pottelbergh, Rodolphe Sepulchre, Alex D. Bird, Hermann Cuntz, Pedro J. Gonçalves, Jan-Matthis Lueckmann, Giacomo Bassetto, Marcel Nonnenmacher, Jakob H. Macke, Audrey J. Sederberg, Jason N. MacLe
Publié dans: BMC Neuroscience, Numéro 18/S1, 2017, ISSN 1471-2202
Éditeur: BioMed Central
DOI: 10.1186/s12868-017-0370-3

26th Annual Computational Neuroscience Meeting (CNS*2017): Part 2

Auteurs: Leonid L. Rubchinsky, Sungwoo Ahn, Wouter Klijn, Ben Cumming, Stuart Yates, Vasileios Karakasis, Alexander Peyser, Marmaduke Woodman, Sandra Diaz-Pier, James Deraeve, Eliana Vassena, William Alexander, David Beeman, Pawel Kudela, Dana Boatman-Reich, William S. Anderson, Niceto R. Luque, Francisco Naveros, Richard R. Carrillo, Eduardo Ros, Angelo Arleo, Jacob Huth, Koki Ichinose, Jihoon Park, Yuji
Publié dans: BMC Neuroscience, Numéro 18/S1, 2017, ISSN 1471-2202
Éditeur: BioMed Central
DOI: 10.1186/s12868-017-0371-2

A Combination of Machine Learning and Cerebellar-like Neural Networks for the Motor Control and Motor Learning of the Fable Modular Robot

Auteurs: Ismael Baira Ojeda, Silvia Tolu, Moisés Pacheco, David Johan Christensen, Henrik Hautop Lund
Publié dans: Journal of Robotics, Networking and Artificial Life, Numéro 4/1, 2017, Page(s) 62, ISSN 2352-6386
Éditeur: Atlantis Press
DOI: 10.2991/jrnal.2017.4.1.14

Fast–Slow Bursters in the Unfolding of a High Codimension Singularity and the Ultra-slow Transitions of Classes

Auteurs: Maria Luisa Saggio, Andreas Spiegler, Christophe Bernard, Viktor K. Jirsa
Publié dans: The Journal of Mathematical Neuroscience, Numéro 7/1, 2017, ISSN 2190-8567
Éditeur: Springer Verlag
DOI: 10.1186/s13408-017-0050-8

Predicting the spatiotemporal diversity of seizure propagation and termination in human focal epilepsy

Auteurs: Timothée Proix, Viktor K. Jirsa, Fabrice Bartolomei, Maxime Guye, Wilson Truccolo
Publié dans: Nature Communications, Numéro 9/1, 2018, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-018-02973-y

Whole-brain analytic measures of network communication reveal increased structure-function correlation in right temporal lobe epilepsy

Auteurs: Jonathan Wirsich, Alistair Perry, Ben Ridley, Timothée Proix, Mathieu Golos, Christian Bénar, Jean-Philippe Ranjeva, Fabrice Bartolomei, Michael Breakspear, Viktor Jirsa, Maxime Guye
Publié dans: NeuroImage: Clinical, Numéro 11, 2016, Page(s) 707-718, ISSN 2213-1582
Éditeur: Elsevier BV
DOI: 10.1016/j.nicl.2016.05.010

Defining epileptogenic networks: Contribution of SEEG and signal analysis

Auteurs: Fabrice Bartolomei, Stanislas Lagarde, Fabrice Wendling, Aileen McGonigal, Viktor Jirsa, Maxime Guye, Christian Bénar
Publié dans: Epilepsia, Numéro 58/7, 2017, Page(s) 1131-1147, ISSN 0013-9580
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/epi.13791

A new neuroinformatics approach to personalized medicine in neurology

Auteurs: Maria I. Falcon, Viktor Jirsa, Ana Solodkin
Publié dans: Current Opinion in Neurology, Numéro 29/4, 2016, Page(s) 429-436, ISSN 1350-7540
Éditeur: Lippincott Williams & Wilkins Ltd.
DOI: 10.1097/WCO.0000000000000344

Resting state brain dynamics and its transients: a combined TMS-EEG study

Auteurs: Mireille Bonnard, Sophie Chen, Jérôme Gaychet, Marcel Carrere, Marmaduke Woodman, Bernard Giusiano, Viktor Jirsa
Publié dans: Scientific Reports, Numéro 6/1, 2016, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/srep31220

Structure and Topology Dynamics of Hyper-Frequency Networks during Rest and Auditory Oddball Performance

Auteurs: Viktor Müller, Dionysios Perdikis, Timo von Oertzen, Rita Sleimen-Malkoun, Viktor Jirsa, Ulman Lindenberger
Publié dans: Frontiers in Computational Neuroscience, Numéro 10, 2016, ISSN 1662-5188
Éditeur: Frontiers Research Foundation
DOI: 10.3389/fncom.2016.00108

Sex differences in the functional connectivity of the amygdalae in association with cortisol

Auteurs: Lydia Kogler, Veronika I. Müller, Eva-Maria Seidel, Roland Boubela, Klaudius Kalcher, Ewald Moser, Ute Habel, Ruben C. Gur, Simon B. Eickhoff, Birgit Derntl
Publié dans: NeuroImage, Numéro 134, 2016, Page(s) 410-423, ISSN 1053-8119
Éditeur: Academic Press
DOI: 10.1016/j.neuroimage.2016.03.064

Correlations Between Personality and Brain Structure: A Crucial Role of Gender

Auteurs: Alessandra D. Nostro, Veronika I. Müller, Andrew T. Reid, Simon B. Eickhoff
Publié dans: Cerebral Cortex, 2016, ISSN 1047-3211
Éditeur: Oxford University Press
DOI: 10.1093/cercor/bhw191

Behavior, sensitivity, and power of activation likelihood estimation characterized by massive empirical simulation

Auteurs: Simon B. Eickhoff, Thomas E. Nichols, Angela R. Laird, Felix Hoffstaedter, Katrin Amunts, Peter T. Fox, Danilo Bzdok, Claudia R. Eickhoff
Publié dans: NeuroImage, Numéro 137, 2016, Page(s) 70-85, ISSN 1053-8119
Éditeur: Academic Press
DOI: 10.1016/j.neuroimage.2016.04.072

How do parcellation size and short-range connectivity affect dynamics in large-scale brain network models?

Auteurs: Timothée Proix, Andreas Spiegler, Michael Schirner, Simon Rothmeier, Petra Ritter, Viktor K. Jirsa
Publié dans: NeuroImage, Numéro 142, 2016, Page(s) 135-149, ISSN 1053-8119
Éditeur: Academic Press
DOI: 10.1016/j.neuroimage.2016.06.016

Heterogeneity of time delays determines synchronization of coupled oscillators

Auteurs: Spase Petkoski, Andreas Spiegler, Timothée Proix, Parham Aram, Jean-Jacques Temprado, Viktor K. Jirsa
Publié dans: Physical Review E, Numéro 94/1, 2016, ISSN 2470-0045
Éditeur: American Physical Society (APS)
DOI: 10.1103/PhysRevE.94.012209

Resting-state test–retest reliability of a priori defined canonical networks over different preprocessing steps

Auteurs: Deepthi P. Varikuti, Felix Hoffstaedter, Sarah Genon, Holger Schwender, Andrew T. Reid, Simon B. Eickhoff
Publié dans: Brain Structure and Function, Numéro 222/3, 2017, Page(s) 1447-1468, ISSN 1863-2653
Éditeur: Springer Verlag
DOI: 10.1007/s00429-016-1286-x

Estimating Fiber Orientation Distribution Functions in 3D-Polarized Light Imaging

Auteurs: Markus Axer, Sven Strohmer, David Gräßel, Oliver Bücker, Melanie Dohmen, Julia Reckfort, Karl Zilles, Katrin Amunts
Publié dans: Frontiers in Neuroanatomy, Numéro 10, 2016, ISSN 1662-5129
Éditeur: Frontiers Research Foundation
DOI: 10.3389/fnana.2016.00040

Spatial normalization of brain images and beyond

Auteurs: J.-F. Mangin, J. Lebenberg, S. Lefranc, N. Labra, G. Auzias, M. Labit, M. Guevara, H. Mohlberg, P. Roca, P. Guevara, J. Dubois, F. Leroy, G. Dehaene-Lambertz, A. Cachia, T. Dickscheid, O. Coulon, C. Poupon, D. Rivière, K. Amunts, Z.Y. Sun
Publié dans: Medical Image Analysis, Numéro 33, 2016, Page(s) 127-133, ISSN 1361-8415
Éditeur: Elsevier BV
DOI: 10.1016/j.media.2016.06.008

Functional Decoding and Meta-analytic Connectivity Modeling in Adult Attention-Deficit/Hyperactivity Disorder

Auteurs: Samuele Cortese, F. Xavier Castellanos, Claudia R. Eickhoff, Giulia D’Acunto, Gabriele Masi, Peter T. Fox, Angela R. Laird, Simon B. Eickhoff
Publié dans: Biological Psychiatry, Numéro 80/12, 2016, Page(s) 896-904, ISSN 0006-3223
Éditeur: Elsevier BV
DOI: 10.1016/j.biopsych.2016.06.014

Layer-specific cholinergic control of human and mouse cortical synaptic plasticity

Auteurs: Matthijs B. Verhoog, Joshua Obermayer, Christian A. Kortleven, René Wilbers, Jordi Wester, Johannes C. Baayen, Christiaan P. J. De Kock, Rhiannon M. Meredith, Huibert D. Mansvelder
Publié dans: Nature Communications, Numéro 7, 2016, Page(s) 12826, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/ncomms12826

High-frequency oscillations in human and monkey neocortex during the wake–sleep cycle

Auteurs: Michel Le Van Quyen, Lyle E. Muller, Bartosz Telenczuk, Eric Halgren, Sydney Cash, Nicholas G. Hatsopoulos, Nima Dehghani, Alain Destexhe
Publié dans: Proceedings of the National Academy of Sciences, Numéro 113/33, 2016, Page(s) 9363-9368, ISSN 0027-8424
Éditeur: National Academy of Sciences
DOI: 10.1073/pnas.1523583113

Stochastic inference with spiking neurons in the high-conductance state

Auteurs: Mihai A. Petrovici, Johannes Bill, Ilja Bytschok, Johannes Schemmel, Karlheinz Meier
Publié dans: Physical Review E, Numéro 94/4, 2016, Page(s) 42312, ISSN 2470-0045
Éditeur: American Physical Society
DOI: 10.1103/PhysRevE.94.042312

Groupwise connectivity-based parcellation of the whole human cortical surface using watershed-driven dimension reduction

Auteurs: Sandrine Lefranc, Pauline Roca, Matthieu Perrot, Cyril Poupon, Denis Le Bihan, Jean-François Mangin, Denis Rivière
Publié dans: Medical Image Analysis, Numéro 30, 2016, Page(s) 11-29, ISSN 1361-8415
Éditeur: Elsevier BV
DOI: 10.1016/j.media.2016.01.003

Neuroimaging Research: From Null-Hypothesis Falsification to Out-of-Sample Generalization

Auteurs: D. Bzdok, G. Varoquaux, B. Thirion
Publié dans: Educational and Psychological Measurement, 2016, ISSN 0013-1644
Éditeur: SAGE Publications
DOI: 10.1177/0013164416667982

ViSimpl: Multi-View Visual Analysis of Brain Simulation Data

Auteurs: Sergio E. Galindo, Pablo Toharia, Oscar D. Robles, Luis Pastor
Publié dans: Frontiers in Neuroinformatics, Numéro 10, 2016, ISSN 1662-5196
Éditeur: Frontiers Research Foundation
DOI: 10.3389/fninf.2016.00044

Implementation errors in the GingerALE Software: Description and recommendations

Auteurs: Simon B. Eickhoff, Angela R. Laird, P. Mickle Fox, Jack L. Lancaster, Peter T. Fox
Publié dans: Human Brain Mapping, Numéro 38/1, 2017, Page(s) 7-11, ISSN 1065-9471
Éditeur: John Wiley & Sons Inc.
DOI: 10.1002/hbm.23342

3D Reconstructed Cyto-, Muscarinic M2 Receptor, and Fiber Architecture of the Rat Brain Registered to the Waxholm Space Atlas

Auteurs: Nicole Schubert, Markus Axer, Martin Schober, Anh-Minh Huynh, Marcel Huysegoms, Nicola Palomero-Gallagher, Jan G. Bjaalie, Trygve B. Leergaard, Mehmet E. Kirlangic, Katrin Amunts, Karl Zilles
Publié dans: Frontiers in Neuroanatomy, Numéro 10, 2016, ISSN 1662-5129
Éditeur: Frontiers Research Foundation
DOI: 10.3389/fnana.2016.00051

Functional Mechanisms of Recovery after Chronic Stroke: Modeling with the Virtual Brain

Auteurs: M. I. Falcon, J. D. Riley, V. Jirsa, A. R. McIntosh, E. Elinor Chen, A. Solodkin
Publié dans: eNeuro, Numéro 3/2, 2016, ISSN 2373-2822
Éditeur: Society for Neuroscience
DOI: 10.1523/ENEURO.0158-15.2016

Unique membrane properties and enhanced signal processing in human neocortical neurons

Auteurs: Guy Eyal, Matthijs B Verhoog, Guilherme Testa-Silva, Yair Deitcher, Johannes C Lodder, Ruth Benavides-Piccione, Juan Morales, Javier DeFelipe, Christiaan PJ de Kock, Huibert D Mansvelder, Idan Segev
Publié dans: eLife, Numéro 5, 2016, ISSN 2050-084X
Éditeur: eLife Sciences Publications
DOI: 10.7554/eLife.16553

Imbalance in subregional connectivity of the right temporoparietal junction in major depression

Auteurs: Timm B. Poeppl, Veronika I. Müller, Felix Hoffstaedter, Danilo Bzdok, Angela R. Laird, Peter T. Fox, Berthold Langguth, Rainer Rupprecht, Christian Sorg, Valentin Riedl, Roberto Goya-Maldonado, Oliver Gruber, Simon B. Eickhoff
Publié dans: Human Brain Mapping, Numéro 37/8, 2016, Page(s) 2931-2942, ISSN 1065-9471
Éditeur: John Wiley & Sons Inc.
DOI: 10.1002/hbm.23217

Selective Activation of Resting-State Networks following Focal Stimulation in a Connectome-Based Network Model of the Human Brain

Auteurs: A. Spiegler, E. C. A. Hansen, C. Bernard, A. R. McIntosh, V. K. Jirsa
Publié dans: eNeuro, Numéro 3/5, 2016, ISSN 2373-2822
Éditeur: eNeuro, Society for Neuroscience
DOI: 10.1523/ENEURO.0068-16.2016

Hybrid Scheme for Modeling Local Field Potentials from Point-Neuron Networks

Auteurs: Espen Hagen, David Dahmen, Maria L. Stavrinou, Henrik Lindén, Tom Tetzlaff, Sacha J. van Albada, Sonja Grün, Markus Diesmann, Gaute T. Einevoll
Publié dans: Cerebral Cortex, Numéro 26/12, 2016, Page(s) 4461-4496, ISSN 1047-3211
Éditeur: Oxford University Press
DOI: 10.1093/cercor/bhw237

The Human Brainnetome Atlas: A New Brain Atlas Based on Connectional Architecture

Auteurs: Lingzhong Fan, Hai Li, Junjie Zhuo, Yu Zhang, Jiaojian Wang, Liangfu Chen, Zhengyi Yang, Congying Chu, Sangma Xie, Angela R. Laird, Peter T. Fox, Simon B. Eickhoff, Chunshui Yu, Tianzi Jiang
Publié dans: Cerebral Cortex, Numéro 26/8, 2016, Page(s) 3508-3526, ISSN 1047-3211
Éditeur: Oxford University Press
DOI: 10.1093/cercor/bhw157

Different involvement of subregions within dorsal premotor and medial frontal cortex for pro- and antisaccades

Auteurs: Edna C. Cieslik, Isabelle Seidler, Angela R. Laird, Peter T. Fox, Simon B. Eickhoff
Publié dans: Neuroscience & Biobehavioral Reviews, Numéro 68, 2016, Page(s) 256-269, ISSN 0149-7634
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.neubiorev.2016.05.012

A neural circuit encoding sexual preference in humans

Auteurs: Timm B. Poeppl, Berthold Langguth, Rainer Rupprecht, Angela R. Laird, Simon B. Eickhoff
Publié dans: Neuroscience & Biobehavioral Reviews, Numéro 68, 2016, Page(s) 530-536, ISSN 0149-7634
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.neubiorev.2016.06.025

Formal Models of the Network Co-occurrence Underlying Mental Operations

Auteurs: Danilo Bzdok, Gaël Varoquaux, Olivier Grisel, Michael Eickenberg, Cyril Poupon, Bertrand Thirion
Publié dans: PLOS Computational Biology, Numéro 12/6, 2016, Page(s) e1004994, ISSN 1553-7358
Éditeur: Public Library of Science (PLoS)
DOI: 10.1371/journal.pcbi.1004994

The Virtual Epileptic Patient: Individualized whole-brain models of epilepsy spread

Auteurs: V.K. Jirsa, T. Proix, D. Perdikis, M.M. Woodman, H. Wang, J. Gonzalez-Martinez, C. Bernard, C. Bénar, M. Guye, P. Chauvel, F. Bartolomei
Publié dans: NeuroImage, Numéro 145, 2017, Page(s) 377-388, ISSN 1053-8119
Éditeur: Academic Press
DOI: 10.1016/j.neuroimage.2016.04.049

Synchronous Spike Patterns in Macaque Motor Cortex during an Instructed-Delay Reach-to-Grasp Task

Auteurs: E. Torre, P. Quaglio, M. Denker, T. Brochier, A. Riehle, S. Grun
Publié dans: Journal of Neuroscience, Numéro 36/32, 2016, Page(s) 8329-8340, ISSN 0270-6474
Éditeur: Society for Neuroscience
DOI: 10.1523/JNEUROSCI.4375-15.2016

Handling Metadata in a Neurophysiology Laboratory

Auteurs: Lyuba Zehl, Florent Jaillet, Adrian Stoewer, Jan Grewe, Andrey Sobolev, Thomas Wachtler, Thomas G. Brochier, Alexa Riehle, Michael Denker, Sonja Grün
Publié dans: Frontiers in Neuroinformatics, Numéro 10, 2016, ISSN 1662-5196
Éditeur: Frontiers Research Foundation
DOI: 10.3389/fninf.2016.00026

ASSET: Analysis of Sequences of Synchronous Events in Massively Parallel Spike Trains

Auteurs: Emiliano Torre, Carlos Canova, Michael Denker, George Gerstein, Moritz Helias, Sonja Grün
Publié dans: PLOS Computational Biology, Numéro 12/7, 2016, Page(s) e1004939, ISSN 1553-7358
Éditeur: Public Library of Science (PLoS)
DOI: 10.1371/journal.pcbi.1004939

Seeing it all: Convolutional network layers map the function of the human visual system

Auteurs: Michael Eickenberg, Alexandre Gramfort, Gaël Varoquaux, Bertrand Thirion
Publié dans: NeuroImage, Numéro 152, 2017, Page(s) 184-194, ISSN 1053-8119
Éditeur: Academic Press
DOI: 10.1016/j.neuroimage.2016.10.001

[Re] Cellular and Network Mechanisms of Slow Oscillatory Activity (<1 Hz) and Wave Propagations in a Cortical Network Model

Auteurs: Maksimov A, van Albada S, Diesmann M
Publié dans: Rescience, 2016, ISSN 2430-3658
Éditeur: Rescience
DOI: 10.5281/zenodo.161526

Exploring the Usefulness of Formal Concept Analysis for Robust Detection of Spatio-temporal Spike Patterns in Massively Parallel Spike Trains

Auteurs: Alper Yegenoglu, Pietro Quaglio, Emiliano Torre, Sonja Grün, Dominik Endres
Publié dans: Graph-Based Representation and Reasoning, 2016, Page(s) 3-16, ISSN 0302-9743
Éditeur: Springer Verlag
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The Spinal Cord Has an Intrinsic System for the Control of pH

Auteurs: Elham Jalalvand, Brita Robertson, Hervé Tostivint, Peter Wallén, Sten Grillner
Publié dans: Current Biology, Numéro 26/10, 2016, Page(s) 1346-1351, ISSN 0960-9822
Éditeur: Cell Press
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Embodied neurology: an integrative framework for neurological disorders

Auteurs: Patrick Freund, Karl Friston, Alan J. Thompson, Klaas E. Stephan, John Ashburner, Dominik R. Bach, Zoltan Nagy, Gunther Helms, Bogdan Draganski, Siawoosh Mohammadi, Martin E. Schwab, Armin Curt, Nikolaus Weiskopf
Publié dans: Brain, Numéro 139/6, 2016, Page(s) 1855-1861, ISSN 0006-8950
Éditeur: Oxford University Press
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Big Science, Brain Simulation, and Neuroethics

Auteurs: Michele Farisco, Kathinka Evers, Arleen Salles
Publié dans: AJOB Neuroscience, Numéro 7/1, 2016, Page(s) 28-30, ISSN 2150-7740
Éditeur: Taylor and Francis
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Premature changes in neuronal excitability account for hippocampal network impairment and autistic-like behavior in neonatal BTBR T+tf/J mice

Auteurs: Giada Cellot, Laura Maggi, Maria Amalia Di Castro, Myriam Catalano, Rosanna Migliore, Michele Migliore, Maria Luisa Scattoni, Gemma Calamandrei, Enrico Cherubini
Publié dans: Scientific Reports, Numéro 6/1, 2016, ISSN 2045-2322
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Searching for principles of brain computation

Auteurs: Wolfgang Maass
Publié dans: Current Opinion in Behavioral Sciences, Numéro 11, 2016, Page(s) 81-92, ISSN 2352-1546
Éditeur: Elsevier Limited
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The laminar integration of sensory inputs with feedback signals in human cortex

Auteurs: Lucy S. Petro, Lars Muckli
Publié dans: Brain and Cognition, Numéro 112, 2017, Page(s) 54-57, ISSN 0278-2626
Éditeur: Academic Press
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Worldwide initiatives to advance brain research

Auteurs: Sten Grillner, Nancy Ip, Christof Koch, Walter Koroshetz, Hideyuki Okano, Miri Polachek, Mu-ming Poo, Terrence J Sejnowski
Publié dans: Nature Neuroscience, Numéro 19/9, 2016, Page(s) 1118-1122, ISSN 1097-6256
Éditeur: Nature Publishing Group
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Benchmarking Spike-Based Visual Recognition: A Dataset and Evaluation

Auteurs: Qian Liu, Garibaldi Pineda-García, Evangelos Stromatias, Teresa Serrano-Gotarredona, Steve B. Furber
Publié dans: Frontiers in Neuroscience, Numéro 10, 2016, ISSN 1662-453X
Éditeur: Frontiers in Neuroscience
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Active subthreshold dendritic conductances shape the local field potential

Auteurs: Torbjørn V. Ness, Michiel W. H. Remme, Gaute T. Einevoll
Publié dans: The Journal of Physiology, Numéro 594/13, 2016, Page(s) 3809-3825, ISSN 0022-3751
Éditeur: Blackwell Publishing Inc.
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Texture Segregation Causes Early Figure Enhancement and Later Ground Suppression in Areas V1 and V4 of Visual Cortex

Auteurs: Jasper Poort, Matthew W. Self, Bram van Vugt, Hemi Malkki, Pieter R. Roelfsema
Publié dans: Cerebral Cortex, Numéro 26/10, 2016, Page(s) 3964-3976, ISSN 1047-3211
Éditeur: Oxford University Press
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Dendritic-branching angles of pyramidal neurons of the human cerebral cortex

Auteurs: Pablo Fernandez-Gonzalez, Ruth Benavides-Piccione, Ignacio Leguey, Concha Bielza, Pedro Larrañaga, Javier DeFelipe
Publié dans: Brain Structure and Function, Numéro 222/4, 2017, Page(s) 1847-1859, ISSN 1863-2653
Éditeur: Springer Verlag
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Comments and General Discussion on “The Anatomical Problem Posed by Brain Complexity and Size: A Potential Solution”

Auteurs: Javier DeFelipe, Rodney J. Douglas, Sean L. Hill, Ed S. Lein, Kevan A. C. Martin, Kathleen S. Rockland, Idan Segev, Gordon M. Shepherd, Gábor Tamás
Publié dans: Frontiers in Neuroanatomy, Numéro 10, 2016, ISSN 1662-5129
Éditeur: Frontiers Research Foundation
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Shining Light on an mGlu5 Photoswitchable NAM: A Theoretical Perspective

Auteurs: James A.R. Dalton, Isaias Lans, Xavier Rovira, Fanny Malhaire, Xavier Gómez-Santacana, Silvia Pittolo, Pau Gorostiza, Amadeu Llebaria, Cyril Goudet, Jean-Philippe Pin, Jesús Giraldo
Publié dans: Current Neuropharmacology, Numéro 14/5, 2016, Page(s) 441-454, ISSN 1570-159X
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Properties and dynamics of inhibitory synaptic communication within the CA3 microcircuits of pyramidal cells and interneurons expressing parvalbumin or cholecystokinin

Auteurs: Z. Kohus, S. Káli, L. Rovira-Esteban, D. Schlingloff, O. Papp, T. F. Freund, N. Hájos, A. I. Gulyás
Publié dans: The Journal of Physiology, Numéro 594/13, 2016, Page(s) 3745-3774, ISSN 0022-3751
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Spatiotemporal interplay between multisensory excitation and recruited inhibition in the lamprey optic tectum

Auteurs: Andreas A Kardamakis, Juan Pérez-Fernández, Sten Grillner
Publié dans: eLife, Numéro 5, 2016, ISSN 2050-084X
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Comparative electrostatic analysis of adenylyl cyclase for isoform dependent regulation properties

Auteurs: Rudi Tong, Rebecca C. Wade, Neil J. Bruce
Publié dans: Proteins: Structure, Function, and Bioinformatics, Numéro 84/12, 2016, Page(s) 1844-1858, ISSN 0887-3585
Éditeur: Wiley-Liss Inc
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Role of DARPP-32 and ARPP-21 in the Emergence of Temporal Constraints on Striatal Calcium and Dopamine Integration

Auteurs: Anu G. Nair, Upinder S. Bhalla, Jeanette Hellgren Kotaleski
Publié dans: PLOS Computational Biology, Numéro 12/9, 2016, Page(s) e1005080, ISSN 1553-7358
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A Framework for Coupled Simulations of Robots and Spiking Neuronal Networks

Auteurs: Georg Hinkel, Henning Groenda, Sebastian Krach, Lorenzo Vannucci, Oliver Denninger, Nino Cauli, Stefan Ulbrich, Arne Roennau, Egidio Falotico, Marc-Oliver Gewaltig, Alois Knoll, Rüdiger Dillmann, Cecilia Laschi, Ralf Reussner
Publié dans: Journal of Intelligent & Robotic Systems, Numéro 85/1, 2017, Page(s) 71-91, ISSN 0921-0296
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Neural Activity Elicited by a Cognitive Task can be Detected in Single-Trials with Simultaneous Intracerebral EEG-fMRI Recordings

Auteurs: Mani Saignavongs, Carolina Ciumas, Mathilde Petton, Romain Bouet, Sébastien Boulogne, Sylvain Rheims, David W. Carmichael, Jean-Philippe Lachaux, Philippe Ryvlin
Publié dans: International Journal of Neural Systems, Numéro 27/01, 2017, Page(s) 1750001, ISSN 0129-0657
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OptoGluNAM4.1, a Photoswitchable Allosteric Antagonist for Real-Time Control of mGlu4 Receptor Activity

Auteurs: Xavier Rovira, Ana Trapero, Silvia Pittolo, Charleine Zussy, Adèle Faucherre, Chris Jopling, Jesús Giraldo, Jean-Philippe Pin, Pau Gorostiza, Cyril Goudet, Amadeu Llebaria
Publié dans: Cell Chemical Biology, Numéro 23/8, 2016, Page(s) 929-934, ISSN 2451-9456
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Optical control of endogenous receptors and cellular excitability using targeted covalent photoswitches

Auteurs: Mercè Izquierdo-Serra, Antoni Bautista-Barrufet, Ana Trapero, Aida Garrido-Charles, Ariadna Díaz-Tahoces, Nuria Camarero, Silvia Pittolo, Sergio Valbuena, Ariadna Pérez-Jiménez, Marina Gay, Alejandro García-Moll, Carles Rodríguez-Escrich, Juan Lerma, Pedro de la Villa, Eduardo Fernández, Miquel À Pericàs, Amadeu Llebaria, Pau Gorostiza
Publié dans: Nature Communications, Numéro 7, 2016, Page(s) 12221, ISSN 2041-1723
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Correlated Fluctuations in Strongly Coupled Binary Networks Beyond Equilibrium

Auteurs: David Dahmen, Hannah Bos, Moritz Helias
Publié dans: Physical Review X, Numéro 6/3, 2016, ISSN 2160-3308
Éditeur: American Physical Society
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FHF-independent conduction of action potentials along the leak-resistant cerebellar granule cell axon

Auteurs: Katarzyna Dover, Christopher Marra, Sergio Solinas, Marko Popovic, Sathyaa Subramaniyam, Dejan Zecevic, Egidio D’Angelo, Mitchell Goldfarb
Publié dans: Nature Communications, Numéro 7, 2016, Page(s) 12895, ISSN 2041-1723
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Learning maximum entropy models from finite-size data sets: A fast data-driven algorithm allows sampling from the posterior distribution

Auteurs: Ulisse Ferrari
Publié dans: Physical Review E, Numéro 94/2, 2016, ISSN 2470-0045
Éditeur: American Physical Society
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Optimizing Network Traffic for Spiking Neural Network Simulations on Densely Interconnected Many-Core Neuromorphic Platforms

Auteurs: Gianvito Urgese, Francesco Barchi, Enrico Macii, Andrea Acquaviva
Publié dans: IEEE Transactions on Emerging Topics in Computing, 2016, Page(s) 1-1, ISSN 2168-6750
Éditeur: IEEE Computer Society
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PSD95 nanoclusters are postsynaptic building blocks in hippocampus circuits

Auteurs: Matthew J. Broadhead, Mathew H. Horrocks, Fei Zhu, Leila Muresan, Ruth Benavides-Piccione, Javier DeFelipe, David Fricker, Maksym V. Kopanitsa, Rory R. Duncan, David Klenerman, Noboru H. Komiyama, Steven F. Lee, Seth G. N. Grant
Publié dans: Scientific Reports, Numéro 6/1, 2016, ISSN 2045-2322
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BluePyOpt: Leveraging Open Source Software and Cloud Infrastructure to Optimise Model Parameters in Neuroscience

Auteurs: Werner Van Geit, Michael Gevaert, Giuseppe Chindemi, Christian Rössert, Jean-Denis Courcol, Eilif B. Muller, Felix Schürmann, Idan Segev, Henry Markram
Publié dans: Frontiers in Neuroinformatics, Numéro 10, 2016, ISSN 1662-5196
Éditeur: Frontiers Research Foundation
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Efficient Integration of Coupled Electrical-Chemical Systems in Multiscale Neuronal Simulations

Auteurs: Ekaterina Brocke, Upinder S. Bhalla, Mikael Djurfeldt, Jeanette Hellgren Kotaleski, Michael Hanke
Publié dans: Frontiers in Computational Neuroscience, Numéro 10, 2016, ISSN 1662-5188
Éditeur: Frontiers Research Foundation
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Oscillation-Driven Spike-Timing Dependent Plasticity Allows Multiple Overlapping Pattern Recognition in Inhibitory Interneuron Networks

Auteurs: Jesús A. Garrido, Niceto R. Luque, Silvia Tolu, Egidio D’Angelo
Publié dans: International Journal of Neural Systems, Numéro 26/05, 2016, Page(s) 1650020, ISSN 0129-0657
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Identifying Anatomical Origins of Coexisting Oscillations in the Cortical Microcircuit

Auteurs: Hannah Bos, Markus Diesmann, Moritz Helias
Publié dans: PLOS Computational Biology, Numéro 12/10, 2016, Page(s) e1005132, ISSN 1553-7358
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Computational Modeling of Single Neuron Extracellular Electric Potentials and Network Local Field Potentials using LFPsim

Auteurs: Harilal Parasuram, Bipin Nair, Egidio D'Angelo, Michael Hines, Giovanni Naldi, Shyam Diwakar
Publié dans: Frontiers in Computational Neuroscience, Numéro 10, 2016, ISSN 1662-5188
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Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON

Auteurs: William W. Lytton, Alexandra H. Seidenstein, Salvador Dura-Bernal, Robert A. McDougal, Felix Schürmann, Michael L. Hines
Publié dans: Neural Computation, Numéro 28/10, 2016, Page(s) 2063-2090, ISSN 0899-7667
Éditeur: MIT Press
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Proactive epigenesis and ethical innovation

Auteurs: Kathinka Evers, Jean‐Pierre Changeux
Publié dans: EMBO reports, Numéro 17/10, 2016, Page(s) 1361-1364, ISSN 1469-221X
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The Basal Ganglia Over 500 Million Years

Auteurs: Sten Grillner, Brita Robertson
Publié dans: Current Biology, Numéro 26/20, 2016, Page(s) R1088-R1100, ISSN 0960-9822
Éditeur: Cell Press
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Consciousness and cortical responsiveness: a within-state study during non-rapid eye movement sleep

Auteurs: Jaakko O. Nieminen, Olivia Gosseries, Marcello Massimini, Elyana Saad, Andrew D. Sheldon, Melanie Boly, Francesca Siclari, Bradley R. Postle, Giulio Tononi
Publié dans: Scientific Reports, Numéro 6/1, 2016, ISSN 2045-2322
Éditeur: Nature Publishing Group
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A General Procedure to Study Subcellular Models of Transsynaptic Signaling at Inhibitory Synapses

Auteurs: Carmen A. Lupascu, Annunziato Morabito, Elisabetta Merenda, Silvia Marinelli, Cristina Marchetti, Rosanna Migliore, Enrico Cherubini, Michele Migliore
Publié dans: Frontiers in Neuroinformatics, Numéro 10, 2016, ISSN 1662-5196
Éditeur: Frontiers Research Foundation
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Serial grouping of 2D-image regions with object-based attention in humans

Auteurs: Danique Jeurissen, Matthew W Self, Pieter R Roelfsema
Publié dans: eLife, Numéro 5, 2016, ISSN 2050-084X
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Stratification of unresponsive patients by an independently validated index of brain complexity

Auteurs: Silvia Casarotto, Angela Comanducci, Mario Rosanova, Simone Sarasso, Matteo Fecchio, Martino Napolitani, Andrea Pigorini, Adenauer G. Casali, Pietro D. Trimarchi, Melanie Boly, Olivia Gosseries, Olivier Bodart, Francesco Curto, Cristina Landi, Maurizio Mariotti, Guya Devalle, Steven Laureys, Giulio Tononi, Marcello Massimini
Publié dans: Annals of Neurology, Numéro 80/5, 2016, Page(s) 718-729, ISSN 0364-5134
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Synapse-Centric Mapping of Cortical Models to the SpiNNaker Neuromorphic Architecture

Auteurs: James C. Knight, Steve B. Furber
Publié dans: Frontiers in Neuroscience, Numéro 10, 2016, ISSN 1662-453X
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Neurotechnological assessment of consciousness disorders: five ethical imperatives

Auteurs: Evers K
Publié dans: Dialogues in Clinical Neuroscience, 2016, Page(s) 155-162, ISSN 1958-5969
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Supervised Learning in Spiking Neural Networks for Precise Temporal Encoding

Auteurs: Brian Gardner, André Grüning
Publié dans: PLOS ONE, Numéro 11/8, 2016, Page(s) e0161335, ISSN 1932-6203
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From Neuron Biophysics to Orientation Selectivity in Electrically Coupled Networks of Neocortical L2/3 Large Basket Cells

Auteurs: Oren Amsalem, Werner Van Geit, Eilif Muller, Henry Markram, Idan Segev
Publié dans: Cerebral Cortex, Numéro 26/8, 2016, Page(s) 3655-3668, ISSN 1047-3211
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The Human Brain Project: Parallel technologies for biologically accurate simulation of Granule cells

Auteurs: Giordana Florimbi, Emanuele Torti, Stefano Masoli, Egidio D'Angelo, Giovanni Danese, Francesco Leporati
Publié dans: Microprocessors and Microsystems, Numéro 47, 2016, Page(s) 303-313, ISSN 0141-9331
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The Effects of Realistic Synaptic Distribution and 3D Geometry on Signal Integration and Extracellular Field Generation of Hippocampal Pyramidal Cells and Inhibitory Neurons

Auteurs: Attila I. Gulyás, Tamás F. Freund, Szabolcs Káli
Publié dans: Frontiers in Neural Circuits, Numéro 10, 2016, ISSN 1662-5110
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Modeling the Cerebellar Microcircuit: New Strategies for a Long-Standing Issue

Auteurs: Egidio D’Angelo, Alberto Antonietti, Stefano Casali, Claudia Casellato, Jesus A. Garrido, Niceto Rafael Luque, Lisa Mapelli, Stefano Masoli, Alessandra Pedrocchi, Francesca Prestori, Martina Francesca Rizza, Eduardo Ros
Publié dans: Frontiers in Cellular Neuroscience, Numéro 10, 2016, ISSN 1662-5102
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Functional Relevance of Different Basal Ganglia Pathways Investigated in a Spiking Model with Reward Dependent Plasticity

Auteurs: Pierre Berthet, Mikael Lindahl, Philip J. Tully, Jeanette Hellgren-Kotaleski, Anders Lansner
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The Number of Genomic Copies at the 16p11.2 Locus Modulates Language, Verbal Memory, and Inhibition

Auteurs: Loyse Hippolyte, Anne M. Maillard, Borja Rodriguez-Herreros, Aurélie Pain, Sandra Martin-Brevet, Carina Ferrari, Philippe Conus, Aurélien Macé, Nouchine Hadjikhani, Andres Metspalu, Anu Reigo, Anneli Kolk, Katrin Männik, Mandy Barker, Bertrand Isidor, Cédric Le Caignec, Cyril Mignot, Laurence Schneider, Laurent Mottron, Boris Keren, Albert David, Martine Doco-Fenzy, Marion Gérard, Raphael Be
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Neurobiological origin of spurious brain morphological changes: A quantitative MRI study

Auteurs: Sara Lorio, Ferath Kherif, Anne Ruef, Lester Melie-Garcia, Richard Frackowiak, John Ashburner, Gunther Helms, Antoine Lutti, Bodgan Draganski
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The contribution of neuroethics to international brain research initiatives

Auteurs: Kathinka Evers
Publié dans: Nature Reviews Neuroscience, Numéro 18/1, 2016, Page(s) 1-2, ISSN 1471-003X
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The pretectal connectome in lamprey

Auteurs: Lorenza Capantini, Arndt von Twickel, Brita Robertson, Sten Grillner
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Data Publications Correlate with Citation Impact

Auteurs: Florian Leitner, Concha Bielza, Sean L. Hill, Pedro Larrañaga
Publié dans: Frontiers in Neuroscience, Numéro 10, 2016, ISSN 1662-453X
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Early Visual Cortex as a Multiscale Cognitive Blackboard

Auteurs: Pieter R. Roelfsema, Floris P. de Lange
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Effect of Heterogeneity on Decorrelation Mechanisms in Spiking Neural Networks: A Neuromorphic-Hardware Study

Auteurs: Thomas Pfeil, Jakob Jordan, Tom Tetzlaff, Andreas Grübl, Johannes Schemmel, Markus Diesmann, Karlheinz Meier
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Microstructural proliferation in human cortex is coupled with the development of face processing

Auteurs: Jesse Gomez, Michael A. Barnett, Vaidehi Natu, Aviv Mezer, Nicola Palomero-Gallagher, Kevin S. Weiner, Katrin Amunts, Karl Zilles, Kalanit Grill-Spector
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Effect of Ionic Diffusion on Extracellular Potentials in Neural Tissue

Auteurs: Geir Halnes, Tuomo Mäki-Marttunen, Daniel Keller, Klas H. Pettersen, Ole A. Andreassen, Gaute T. Einevoll
Publié dans: PLOS Computational Biology, Numéro 12/11, 2016, Page(s) e1005193, ISSN 1553-7358
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Best practices in data analysis and sharing in neuroimaging using MRI

Auteurs: Thomas E Nichols, Samir Das, Simon B Eickhoff, Alan C Evans, Tristan Glatard, Michael Hanke, Nikolaus Kriegeskorte, Michael P Milham, Russell A Poldrack, Jean-Baptiste Poline, Erika Proal, Bertrand Thirion, David C Van Essen, Tonya White, B T Thomas Yeo
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The neural basis of sex differences in sexual behavior: A quantitative meta-analysis

Auteurs: Timm B. Poeppl, Berthold Langguth, Rainer Rupprecht, Adam Safron, Danilo Bzdok, Angela R. Laird, Simon B. Eickhoff
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The Human Brain Project: Creating a European Research Infrastructure to Decode the Human Brain

Auteurs: Katrin Amunts, Christoph Ebell, Jeff Muller, Martin Telefont, Alois Knoll, Thomas Lippert
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Active cortical dendrites modulate perception

Auteurs: Naoya Takahashi, Thomas G. Oertner, Peter Hegemann, Matthew E. Larkum
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Topographic organization of the cerebral cortex and brain cartography

Auteurs: Simon B. Eickhoff, R. Todd Constable, B.T. Thomas Yeo
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Multimodal evaluation of the amygdala's functional connectivity

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Understanding the brain through large, multidisciplinary research initiatives

Auteurs: Gianluca Quaglio, Maurizio Corbetta, Theodoros Karapiperis, Katrin Amunts, Walter Koroshetz, Tetsuo Yamamori, Ruxandra Draghia-Akli
Publié dans: The Lancet Neurology, Numéro 16/3, 2017, Page(s) 183-184, ISSN 1474-4422
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The heterogeneity of the left dorsal premotor cortex evidenced by multimodal connectivity-based parcellation and functional characterization

Auteurs: Sarah Genon, Andrew Reid, Hai Li, Lingzhong Fan, Veronika I. Müller, Edna C. Cieslik, Felix Hoffstaedter, Robert Langner, Christian Grefkes, Angela R. Laird, Peter T. Fox, Tianzi Jiang, Katrin Amunts, Simon B. Eickhoff
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Altered Brain Activity in Unipolar Depression Revisited

Auteurs: Veronika I. Müller, Edna C. Cieslik, Ilinca Serbanescu, Angela R. Laird, Peter T. Fox, Simon B. Eickhoff
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Evidence for three genetic loci involved in both anorexia nervosa risk and variation of body mass index

Auteurs: A Hinney, M Kesselmeier, S Jall, A-L Volckmar, M Föcker, J Antel, Vesna Boraska Perica, Christopher S Franklin, James A B Floyd, Laura M Thornton, Laura M Huckins, Lorraine Southam, N William Rayner, Ioanna Tachmazidou, Kelly L Klump, Janet Treasure, Cathryn M Lewis, Ulrike Schmidt, Federica Tozzi, Kirsty iezebrink, Johannes Hebebrand, Philip Gorwood, Roger A H Adan, Martien J H Kas, Angela Favar
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Éditeur: Nature Publishing Group
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Identification of rare variants in KCTD13 at the schizophrenia risk locus 16p11.2

Auteurs: Franziska Degenhardt, Barbara Heinemann, Jana Strohmaier, Marvin A. Pfohl, Ina Giegling, Andrea Hofmann, Kerstin U. Ludwig, Stephanie H. Witt, Michael Ludwig, Andreas J. Forstner, Margot Albus, Sibylle G. Schwab, Margitta Borrmann-Hassenbach, Leonard Lennertz, Michael Wagner, Per Hoffmann, Dan Rujescu, Wolfgang Maier, Sven Cichon, Marcella Rietschel, Markus M. Nöthen
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Self-Grounded Vision: Hand Ownership Modulates Visual Location through Cortical β and γ Oscillations

Auteurs: Nathan Faivre, Jonathan Dönz, Michele Scandola, Herberto Dhanis, Javier Bello Ruiz, Fosco Bernasconi, Roy Salomon, Olaf Blanke
Publié dans: The Journal of Neuroscience, Numéro 37/1, 2017, Page(s) 11-22, ISSN 0270-6474
Éditeur: Society for Neuroscience
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Fundamental Activity Constraints Lead to Specific Interpretations of the Connectome

Auteurs: Jannis Schuecker, Maximilian Schmidt, Sacha J. van Albada, Markus Diesmann, Moritz Helias
Publié dans: PLOS Computational Biology, Numéro 13/2, 2017, Page(s) e1005179, ISSN 1553-7358
Éditeur: Public Library of Science (PLoS)
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Reproducibility of superficial white matter tracts using diffusion-weighted imaging tractography

Auteurs: Miguel Guevara, Claudio Román, Josselin Houenou, Delphine Duclap, Cyril Poupon, Jean François Mangin, Pamela Guevara
Publié dans: NeuroImage, Numéro 147, 2017, Page(s) 703-725, ISSN 1053-8119
Éditeur: Academic Press
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Influence of age and cognitive performance on resting-state brain networks of older adults in a population-based cohort

Auteurs: Christiane Jockwitz, Svenja Caspers, Silke Lux, Simon B. Eickhoff, Kerstin Jütten, Stefan Lenzen, Susanne Moebus, Noreen Pundt, Andrew Reid, Felix Hoffstaedter, Karl-Heinz Jöckel, Raimund Erbel, Sven Cichon, Markus M. Nöthen, N. Jon Shah, Karl Zilles, Katrin Amunts
Publié dans: Cortex, Numéro 89, 2017, Page(s) 28-44, ISSN 0010-9452
Éditeur: Masson Publishing
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Self-induced intracerebral gamma oscillations in the human cortex

Auteurs: Juliana Corlier, Daphné Rimsky-Robert, Mario Valderrama, Katia Lehongre, Claude Adam, Stéphane Clémenceau, Stéphane Charpier, Julien Bastin, Philippe Kahane, Jean-Philippe Lachaux, Vincent Navarro, Michel Le Van Quyen
Publié dans: Brain, Numéro 139/12, 2016, Page(s) 3084-3091, ISSN 0006-8950
Éditeur: Oxford University Press
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The Cytoarchitecture of Domain-specific Regions in Human High-level Visual Cortex

Auteurs: Kevin S. Weiner, Michael A. Barnett, Simon Lorenz, Julian Caspers, Anthony Stigliani, Katrin Amunts, Karl Zilles, Bruce Fischl, Kalanit Grill-Spector
Publié dans: Cerebral Cortex, Numéro 27/1, 2016, Page(s) 146-161, ISSN 1047-3211
Éditeur: Oxford University Press
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Exome chip analyses in adult attention deficit hyperactivity disorder

Auteurs: T Zayats, K K Jacobsen, R Kleppe, C P Jacob, S Kittel-Schneider, M Ribasés, J A Ramos-Quiroga, V Richarte, M Casas, N R Mota, E H Grevet, M Klein, J Corominas, J Bralten, T Galesloot, A A Vasquez, S Herms, A J Forstner, H Larsson, G Breen, P Asherson, S Gross-Lesch, K P Lesch, S Cichon, M B Gabrielsen, O L Holmen, C H D Bau, J Buitelaar, L Kiemeney, S V Faraone, B Cormand, B Franke, A Reif, J Haa
Publié dans: Translational Psychiatry, Numéro 6/10, 2016, Page(s) e923, ISSN 2158-3188
Éditeur: Nature Publishing Group
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Semi-supervised classification trees

Auteurs: Jurica Levatić, Michelangelo Ceci, Dragi Kocev, Sašo Džeroski
Publié dans: Journal of Intelligent Information Systems, 2017, ISSN 0925-9902
Éditeur: Kluwer Academic Publishers
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Large-scale neuromorphic computing systems

Auteurs: Steve Furber
Publié dans: Journal of Neural Engineering, Numéro 13/5, 2016, Page(s) 051001, ISSN 1741-2560
Éditeur: Institute of Physics Publishing
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Multi-label classification via multi-target regression on data streams

Auteurs: Aljaž Osojnik, Panče Panov, Sašo Džeroski
Publié dans: Machine Learning, Numéro 106/6, 2017, Page(s) 745-770, ISSN 0885-6125
Éditeur: Kluwer Academic Publishers
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Yeasts and yeast-like fungi in tap water and groundwater, and their transmission to household appliances

Auteurs: Monika Novak Babič, Polona Zalar, Bernard Ženko, Sašo Džeroski, Nina Gunde-Cimerman
Publié dans: Fungal Ecology, Numéro 20, 2016, Page(s) 30-39, ISSN 1754-5048
Éditeur: Elsevier BV
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Refinement and selection heuristics in subgroup discovery and classification rule learning

Auteurs: Anita Valmarska, Nada Lavrač, Johannes Fürnkranz, Marko Robnik-Šikonja
Publié dans: Expert Systems with Applications, Numéro 81, 2017, Page(s) 147-162, ISSN 0957-4174
Éditeur: Pergamon Press Ltd.
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Designing Workflows for the Reproducible Analysis of Electrophysiological Data

Auteurs: Michael Denker, Sonja Grün
Publié dans: BrainComp 2015: Brain-Inspired Computing, 2016, Page(s) 58-72
Éditeur: Springer International Publishing
DOI: 10.1007/978-3-319-50862-7_5

ClowdFlows: Online workflows for distributed big data mining

Auteurs: Janez Kranjc, Roman Orač, Vid Podpečan, Nada Lavrač, Marko Robnik-Šikonja
Publié dans: Future Generation Computer Systems, Numéro 68, 2017, Page(s) 38-58, ISSN 0167-739X
Éditeur: Elsevier BV
DOI: 10.1016/j.future.2016.07.018

HINMINE: heterogeneous information network mining with information retrieval heuristics

Auteurs: Jan Kralj, Marko Robnik-Šikonja, Nada Lavrač
Publié dans: Journal of Intelligent Information Systems, 2017, ISSN 0925-9902
Éditeur: Kluwer Academic Publishers
DOI: 10.1007/s10844-017-0444-9

Selective TMS-induced modulation of functional connectivity correlates with changes in behavior

Auteurs: Puiu F. Balan, Annelies Gerits, Dante Mantini, Wim Vanduffel
Publié dans: NeuroImage, Numéro 149, 2017, Page(s) 361-378, ISSN 1053-8119
Éditeur: Academic Press
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Modeling dynamical systems with data stream mining

Auteurs: Aljaz Osojnik, Pance Panov, Saso Dzeroski
Publié dans: Computer Science and Information Systems, Numéro 13/2, 2016, Page(s) 453-473, ISSN 1820-0214
Éditeur: ComSIS Consortium
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Neurorobotics: A strategic pillar of the Human Brain Project

Auteurs: Alois Knoll and Marc-Oliver Gewaltig
Publié dans: Brain-inspired intelligent robotics: The intersection of robotics and neuroscience, 2016
Éditeur: Science AAAS

25th Annual Computational Neuroscience Meeting: CNS-2016

Auteurs: Tatyana O. Sharpee, Alain Destexhe, Mitsuo Kawato, Vladislav Sekulić, Frances K. Skinner, Daniel K. Wójcik, Chaitanya Chintaluri, Dorottya Cserpán, Zoltán Somogyvári, Jae Kyoung Kim, Zachary P. Kilpatrick, Matthew R. Bennett, Kresimir Josić, Irene Elices, David Arroyo, Rafael Levi, Francisco B. Rodriguez, Pablo Varona, Eunjin Hwang, Bowon Kim, Hio-Been Han, Tae Kim, James T. McKenna, Ritchie
Publié dans: BMC Neuroscience, Numéro 17/S1, 2016, ISSN 1471-2202
Éditeur: BioMed Central
DOI: 10.1186/s12868-016-0283-6

Closed Loop Interactions between Spiking Neural Network and Robotic Simulators Based on MUSIC and ROS

Auteurs: Philipp Weidel, Mikael Djurfeldt, Renato C. Duarte, Abigail Morrison
Publié dans: Frontiers in Neuroinformatics, Numéro 10, 2016, ISSN 1662-5196
Éditeur: Frontiers Research Foundation
DOI: 10.3389/fninf.2016.00031

Ontology Engineering: From an Art to a Craft

Auteurs: Larisa Soldatova, Panče Panov, Sašo Džeroski
Publié dans: OWLED 2015: Ontology Engineering, 2016, Page(s) 174-181
Éditeur: Springer International Publishing
DOI: 10.1007/978-3-319-33245-1_18

Decoding Grasping Movements from the Parieto-Frontal Reaching Circuit in the Nonhuman Primate

Auteurs: Koen Nelissen, Prosper Agbesi Fiave, Wim Vanduffel
Publié dans: Cerebral Cortex, 2017, Page(s) 1-15, ISSN 1047-3211
Éditeur: Oxford University Press
DOI: 10.1093/cercor/bhx037

Learning Ensembles of Process-Based Models by Bagging of Random Library Samples

Auteurs: Nikola Simidjievski, Ljupčo Todorovski, Sašo Džeroski
Publié dans: DS 2016: Discovery Science, 2016, Page(s) 245-260
Éditeur: Springer International Publishing
DOI: 10.1007/978-3-319-46307-0_16

Demonstrating Hybrid Learning in a Flexible Neuromorphic Hardware System

Auteurs: Simon Friedmann, Johannes Schemmel, Andreas Grubl, Andreas Hartel, Matthias Hock, Karlheinz Meier
Publié dans: IEEE Transactions on Biomedical Circuits and Systems, Numéro 11/1, 2017, Page(s) 128-142, ISSN 1932-4545
Éditeur: Institute of Electrical and Electronics Engineers
DOI: 10.1109/TBCAS.2016.2579164

Homogeneous clusters of Alzheimer’s disease patient population

Auteurs: Dragan Gamberger, Bernard Ženko, Alexis Mitelpunkt, Nada Lavrač
Publié dans: BioMedical Engineering OnLine, Numéro 15/S1, 2016, ISSN 1475-925X
Éditeur: BioMed Central
DOI: 10.1186/s12938-016-0183-0

Energy-efficient neural network chips approach human recognition capabilities

Auteurs: Wolfgang Maass
Publié dans: Proceedings of the National Academy of Sciences, Numéro 113/41, 2016, Page(s) 11387-11389, ISSN 0027-8424
Éditeur: National Academy of Sciences
DOI: 10.1073/pnas.1614109113

Comparison of Tree-Based Methods for Multi-target Regression on Data Streams

Auteurs: Aljaž Osojnik, Panče Panov, Sašo Džeroski
Publié dans: NFMCP 2015: New Frontiers in Mining Complex Patterns, 2016, Page(s) 17-31
Éditeur: Springer International Publishing
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Effective Connectivity Reveals Largely Independent Parallel Networks of Face and Body Patches

Auteurs: Elsie Premereur, Jessica Taubert, Peter Janssen, Rufin Vogels, Wim Vanduffel
Publié dans: Current Biology, Numéro 26/24, 2016, Page(s) 3269-3279, ISSN 0960-9822
Éditeur: Cell Press
DOI: 10.1016/j.cub.2016.09.059

Option Predictive Clustering Trees for Multi-target Regression

Auteurs: Aljaž Osojnik, Sašo Džeroski, Dragi Kocev
Publié dans: DS 2016: Discovery Science, 2016, Page(s) 118-133
Éditeur: Springer International Publishing
DOI: 10.1007/978-3-319-46307-0_8

Fast Predictive Handshaking in Synchronous FPGAs for Fully Asynchronous Multisymbol Chip Links: Application to SpiNNaker 2-of-7 Links

Auteurs: Amirreza Yousefzadeh, Luis A. Plana, Steve Temple, Teresa Serrano-Gotarredona, Steve B. Furber, Bernabe Linares-Barranco
Publié dans: IEEE Transactions on Circuits and Systems II: Express Briefs, Numéro 63/8, 2016, Page(s) 763-767, ISSN 1549-7747
Éditeur: Institute of Electrical and Electronics Engineers
DOI: 10.1109/TCSII.2016.2531092

Microprocessors: the engines of the digital age

Auteurs: Steve Furber
Publié dans: Proceedings of the Royal Society A: Mathematical, Physical and Engineering Science, Numéro 473/2199, 2017, Page(s) 20160893, ISSN 1364-5021
Éditeur: Royal Society of London
DOI: 10.1098/rspa.2016.0893

Process-based design of dynamical biological systems

Auteurs: Jovan Tanevski, Ljupčo Todorovski, Sašo Džeroski
Publié dans: Scientific Reports, Numéro 6/1, 2016, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/srep34107

Effects of Calcium Spikes in the Layer 5 Pyramidal Neuron on Coincidence Detection and Activity Propagation

Auteurs: Yansong Chua, Abigail Morrison
Publié dans: Frontiers in Computational Neuroscience, Numéro 10, 2016, ISSN 1662-5188
Éditeur: Frontiers Research Foundation
DOI: 10.3389/fncom.2016.00076

Functional complexity emerging from anatomical constraints in the brain: the significance of network modularity and rich-clubs

Auteurs: Gorka Zamora-López, Yuhan Chen, Gustavo Deco, Morten L. Kringelbach, Changsong Zhou
Publié dans: Scientific Reports, Numéro 6/1, 2016, ISSN 2045-2322
Éditeur: Nature Publishing Group
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Connecting Artificial Brains to Robots in a Comprehensive Simulation Framework: The Neurorobotics Platform

Auteurs: Egidio Falotico, Lorenzo Vannucci, Alessandro Ambrosano, Ugo Albanese, Stefan Ulbrich, Juan Camilo Vasquez Tieck, Georg Hinkel, Jacques Kaiser, Igor Peric, Oliver Denninger, Nino Cauli, Murat Kirtay, Arne Roennau, Gudrun Klinker, Axel Von Arnim, Luc Guyot, Daniel Peppicelli, Pablo Martínez-Cañada, Eduardo Ros, Patrick Maier, Sandro Weber, Manuel Huber, David Plecher, Florian Röhrbein, Stefan De
Publié dans: Frontiers in Neurorobotics, Numéro 11, 2017, ISSN 1662-5218
Éditeur: Frontiers Research Foundation
DOI: 10.3389/fnbot.2017.00002

Climbing Brain Levels of Organisation from Genes to Consciousness

Auteurs: Jean-Pierre Changeux
Publié dans: Trends in Cognitive Sciences, Numéro 21/3, 2017, Page(s) 168-181, ISSN 1364-6613
Éditeur: Elsevier BV
DOI: 10.1016/j.tics.2017.01.004

Musculoskeletal Robots: Scalability in Neural Control

Auteurs: Christoph Richter, Soren Jentzsch, Rafael Hostettler, Jesus A. Garrido, Eduardo Ros, Alois Knoll, Florian Rohrbein, Patrick van der Smagt, Jorg Conradt
Publié dans: IEEE Robotics & Automation Magazine, Numéro 23/4, 2016, Page(s) 128-137, ISSN 1070-9932
Éditeur: Institute of Electrical and Electronics Engineers
DOI: 10.1109/MRA.2016.2535081

A Comparison of Different Data Transformation Approaches in the Feature Ranking Context

Auteurs: Matej Petković, Panče Panov, Sašo Džeroski
Publié dans: DS 2016: Discovery Science, 2016, Page(s) 310-324
Éditeur: Springer International Publishing
DOI: 10.1007/978-3-319-46307-0_20

Self-training for multi-target regression with tree ensembles

Auteurs: Jurica Levatić, Michelangelo Ceci, Dragi Kocev, Sašo Džeroski
Publié dans: Knowledge-Based Systems, Numéro 123, 2017, Page(s) 41-60, ISSN 0950-7051
Éditeur: Elsevier BV
DOI: 10.1016/j.knosys.2017.02.014

Speed hysteresis and noise shaping of traveling fronts in neural fields: role of local circuitry and nonlocal connectivity

Auteurs: Cristiano Capone, Maurizio Mattia
Publié dans: Scientific Reports, Numéro 7, 2017, Page(s) 39611, ISSN 2045-2322
Éditeur: Nature Publishing Group
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Measures of metabolism and complexity in the brain of patients with disorders of consciousness

Auteurs: Olivier Bodart, Olivia Gosseries, Sarah Wannez, Aurore Thibaut, Jitka Annen, Melanie Boly, Mario Rosanova, Adenauer G. Casali, Silvia Casarotto, Giulio Tononi, Marcello Massimini, Steven Laureys
Publié dans: NeuroImage: Clinical, Numéro 14, 2017, Page(s) 354-362, ISSN 2213-1582
Éditeur: Elsevier BV
DOI: 10.1016/j.nicl.2017.02.002

Impedance Spectrum in Cortical Tissue: Implications for Propagation of LFP Signals on the Microscopic Level

Auteurs: Stéphanie Miceli, Torbjørn V. Ness, Gaute T. Einevoll, Dirk Schubert
Publié dans: eneuro, Numéro 4/1, 2017, Page(s) ENEURO.0291-16.2016, ISSN 2373-2822
Éditeur: Society for Neuroscience
DOI: 10.1523/ENEURO.0291-16.2016

Untangling Basal Ganglia Network Dynamics and Function: Role of Dopamine Depletion and Inhibition Investigated in a Spiking Network Model

Auteurs: Mikael Lindahl, Jeanette Hellgren Kotaleski
Publié dans: eneuro, Numéro 3/6, 2016, Page(s) ENEURO.0156-16.2016, ISSN 2373-2822
Éditeur: Society for Neuroscience
DOI: 10.1523/ENEURO.0156-16.2016

Living well in the Neuropolis

Auteurs: Des Fitzgerald, Nikolas Rose, Ilina Singh
Publié dans: The Sociological Review Monographs, Numéro 64/1, 2016, Page(s) 221-237, ISSN 0081-1769
Éditeur: Wiley online library
DOI: 10.1002/2059-7932.12022

Local recording of biological magnetic fields using Giant Magneto Resistance-based micro-probes

Auteurs: Francesca Barbieri, Vincent Trauchessec, Laure Caruso, Josué Trejo-Rosillo, Bartosz Telenczuk, Elodie Paul, Thierry Bal, Alain Destexhe, Claude Fermon, Myriam Pannetier-Lecoeur, Gilles Ouanounou
Publié dans: Scientific Reports, Numéro 6/1, 2016, ISSN 2045-2322
Éditeur: Nature Publishing Group
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Individual brain structure and modelling predict seizure propagation

Auteurs: Timothée Proix, Fabrice Bartolomei, Maxime Guye, Viktor K. Jirsa
Publié dans: Brain, Numéro 140/3, 2017, Page(s) 641-654, ISSN 0006-8950
Éditeur: Oxford University Press
DOI: 10.1093/brain/awx004

Local field potentials primarily reflect inhibitory neuron activity in human and monkey cortex

Auteurs: Bartosz Teleńczuk, Nima Dehghani, Michel Le Van Quyen, Sydney S. Cash, Eric Halgren, Nicholas G. Hatsopoulos, Alain Destexhe
Publié dans: Scientific Reports, Numéro 7, 2017, Page(s) 40211, ISSN 2045-2322
Éditeur: Nature Publishing Group
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Recent progress in multi-electrode spike sorting methods

Auteurs: Baptiste Lefebvre, Pierre Yger, Olivier Marre
Publié dans: Journal of Physiology-Paris, 2017, ISSN 0928-4257
Éditeur: Elsevier BV
DOI: 10.1016/j.jphysparis.2017.02.005

Reaction-diffusion-like formalism for plastic neural networks reveals dissipative solitons at criticality

Auteurs: Dmytro Grytskyy, Markus Diesmann, Moritz Helias
Publié dans: Physical Review E, Numéro 93/6, 2016, ISSN 2470-0045
Éditeur: Physical Review E
DOI: 10.1103/PhysRevE.93.062303

Tracking Dynamic Interactions Between Structural and Functional Connectivity: A TMS/EEG-dMRI Study

Auteurs: Enrico Amico, Olivier Bodart, Mario Rosanova, Olivia Gosseries, Lizette Heine, Pieter Van Mierlo, Charlotte Martial, Marcello Massimini, Daniele Marinazzo, Steven Laureys
Publié dans: Brain Connectivity, Numéro 7/2, 2017, Page(s) 84-97, ISSN 2158-0014
Éditeur: Mary Ann Liebert Inc.
DOI: 10.1089/brain.2016.0462

Neurorobotics

Auteurs: A. Knoll, F. Röhrbein, A. Kuhn, M. Akl, K. Sharma
Publié dans: Informatik-Spektrum, Numéro 40/2, 2017, Page(s) 161-164, ISSN 0170-6012
Éditeur: Springer Verlag
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Hopf bifurcation in a nonlocal nonlinear transport equation stemming from stochastic neural dynamics

Auteurs: Audric Drogoul, Romain Veltz
Publié dans: Chaos: An Interdisciplinary Journal of Nonlinear Science, Numéro 27/2, 2017, Page(s) 021101, ISSN 1054-1500
Éditeur: American Institute of Physics
DOI: 10.1063/1.4976510

Function-structure connectivity in patients with severe brain injury as measured by MRI-DWI and FDG-PET

Auteurs: J. Annen, L. Heine, E. Ziegler, G. Frasso, M. Bahri, C. Di Perri, J. Stender, C. Martial, S. Wannez, K. D'ostilio, E. Amico, G. Antonopoulos, C. Bernard, F. Tshibanda, R. Hustinx, S. Laureys
Publié dans: Human Brain Mapping, Numéro 37/11, 2016, Page(s) 3707-3720, ISSN 1065-9471
Éditeur: John Wiley & Sons Inc.
DOI: 10.1002/hbm.23269

Multiple Choice Neurodynamical Model of the Uncertain Option Task

Auteurs: Andrea Insabato, Mario Pannunzi, Gustavo Deco
Publié dans: PLOS Computational Biology, Numéro 13/1, 2017, Page(s) e1005250, ISSN 1553-7358
Éditeur: International Society for Computational Biology (ISCB).
DOI: 10.1371/journal.pcbi.1005250

Power-law statistics and universal scaling in the absence of criticality

Auteurs: Jonathan Touboul, Alain Destexhe
Publié dans: Physical Review E, Numéro 95/1, 2017, ISSN 2470-0045
Éditeur: American Physical Society
DOI: 10.1103/PhysRevE.95.012413

Synaptic Correlates of Working Memory Capacity

Auteurs: Yuanyuan Mi, Mikhail Katkov, Misha Tsodyks
Publié dans: Neuron, Numéro 93/2, 2017, Page(s) 323-330, ISSN 0896-6273
Éditeur: Cell Press
DOI: 10.1016/j.neuron.2016.12.004

Environmental factors linked to depression vulnerability are associated with altered cerebellar resting-state synchronization

Auteurs: Aldo Córdova-Palomera, Cristian Tornador, Carles Falcón, Nuria Bargalló, Paolo Brambilla, Benedicto Crespo-Facorro, Gustavo Deco, Lourdes Fañanás
Publié dans: Scientific Reports, Numéro 6/1, 2016, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/srep37384

Reproducibility and Comparability of Computational Models for Astrocyte Calcium Excitability

Auteurs: Tiina Manninen, Riikka Havela, Marja-Leena Linne
Publié dans: Frontiers in Neuroinformatics, Numéro 11, 2017, ISSN 1662-5196
Éditeur: Frontiers Research Foundation
DOI: 10.3389/fninf.2017.00011

Hebbian plasticity requires compensatory processes on multiple timescales

Auteurs: Friedemann Zenke, Wulfram Gerstner
Publié dans: Philosophical Transactions of the Royal Society B: Biological Sciences, Numéro 372/1715, 2017, Page(s) 20160259, ISSN 0962-8436
Éditeur: Royal Society of London
DOI: 10.1098/rstb.2016.0259

Hebbian Spike-Timing Dependent Plasticity at the Cerebellar Input Stage

Auteurs: Martina Sgritta, Francesca Locatelli, Teresa Soda, Francesca Prestori, Egidio Ugo D'Angelo
Publié dans: The Journal of Neuroscience, Numéro 37/11, 2017, Page(s) 2809-2823, ISSN 0270-6474
Éditeur: Society for Neuroscience
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Data-driven identification of prognostic tumor subpopulations using spatially mapped t-SNE of mass spectrometry imaging data

Auteurs: Walid M. Abdelmoula, Benjamin Balluff, Sonja Englert, Jouke Dijkstra, Marcel J. T. Reinders, Axel Walch, Liam A. McDonnell, Boudewijn P. F. Lelieveldt
Publié dans: Proceedings of the National Academy of Sciences, Numéro 113/43, 2016, Page(s) 12244-12249, ISSN 0027-8424
Éditeur: National Academy of Sciences
DOI: 10.1073/pnas.1510227113

Controlled clinical trial of repeated prefrontal tDCS in patients with chronic minimally conscious state

Auteurs: Aurore Thibaut, Sarah Wannez, Anne-Francoise Donneau, Camille Chatelle, Olivia Gosseries, Marie-Aurélie Bruno, Steven Laureys
Publié dans: Brain Injury, Numéro 31/4, 2017, Page(s) 466-474, ISSN 0269-9052
Éditeur: Taylor & Francis
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Single Neuron Optimization as a Basis for Accurate Biophysical Modeling: The Case of Cerebellar Granule Cells

Auteurs: Stefano Masoli, Martina F. Rizza, Martina Sgritta, Werner Van Geit, Felix Schürmann, Egidio D'Angelo
Publié dans: Frontiers in Cellular Neuroscience, Numéro 11, 2017, ISSN 1662-5102
Éditeur: Frontiers Research Foundation
DOI: 10.3389/fncel.2017.00071

Mass Cytometry of the Human Mucosal Immune System Identifies Tissue- and Disease-Associated Immune Subsets

Auteurs: Vincent van Unen, Na Li, Ilse Molendijk, Mine Temurhan, Thomas Höllt, Andrea E. van der Meulen-de Jong, Hein W. Verspaget, M. Luisa Mearin, Chris J. Mulder, Jeroen van Bergen, Boudewijn P.F. Lelieveldt, Frits Koning
Publié dans: Immunity, Numéro 44/5, 2016, Page(s) 1227-1239, ISSN 1074-7613
Éditeur: Cell Press
DOI: 10.1016/j.immuni.2016.04.014

A Multiple-Plasticity Spiking Neural Network Embedded in a Closed-Loop Control System to Model Cerebellar Pathologies

Auteurs: Alice Geminiani, Claudia Casellato, Alberto Antonietti, Egidio D’Angelo, Alessandra Pedrocchi
Publié dans: International Journal of Neural Systems, 2017, Page(s) 1750017, ISSN 0129-0657
Éditeur: World Scientific Publishing Co
DOI: 10.1142/S0129065717500174

Automated Ischemic Lesion Segmentation in MRI Mouse Brain Data after Transient Middle Cerebral Artery Occlusion

Auteurs: Inge A. Mulder, Artem Khmelinskii, Oleh Dzyubachyk, Sebastiaan de Jong, Nathalie Rieff, Marieke J. H. Wermer, Mathias Hoehn, Boudewijn P. F. Lelieveldt, Arn M. J. M. van den Maagdenberg
Publié dans: Frontiers in Neuroinformatics, Numéro 11, 2017, ISSN 1662-5196
Éditeur: Frontiers Research Foundation
DOI: 10.3389/fninf.2017.00003

Reducing GABAA-mediated inhibition improves forelimb motor function after focal cortical stroke in mice

Auteurs: Claudia Alia, Cristina Spalletti, Stefano Lai, Alessandro Panarese, Silvestro Micera, Matteo Caleo
Publié dans: Scientific Reports, Numéro 6/1, 2016, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/srep37823

Detection of Conversion from Mild Cognitive Impairment to Alzheimer's Disease Using Longitudinal Brain MRI

Auteurs: Zhuo Sun, Martijn van de Giessen, Boudewijn P. F. Lelieveldt, Marius Staring
Publié dans: Frontiers in Neuroinformatics, Numéro 11, 2017, ISSN 1662-5196
Éditeur: Frontiers Research Foundation
DOI: 10.3389/fninf.2017.00016

Unbinding Kinetics of a p38 MAP Kinase Type II Inhibitor from Metadynamics Simulations

Auteurs: Rodrigo Casasnovas, Vittorio Limongelli, Pratyush Tiwary, Paolo Carloni, Michele Parrinello
Publié dans: Journal of the American Chemical Society, Numéro 139/13, 2017, Page(s) 4780-4788, ISSN 0002-7863
Éditeur: American Chemical Society
DOI: 10.1021/jacs.6b12950

Density-based clustering: A ‘landscape view’ of multi-channel neural data for inference and dynamic complexity analysis

Auteurs: Gabriel Baglietto, Guido Gigante, Paolo Del Giudice
Publié dans: PLOS ONE, Numéro 12/4, 2017, Page(s) e0174918, ISSN 1932-6203
Éditeur: Public Library of Science
DOI: 10.1371/journal.pone.0174918

Illuminating Phenylazopyridines To Photoswitch Metabotropic Glutamate Receptors: From the Flask to the Animals

Auteurs: Xavier Gómez-Santacana, Silvia Pittolo, Xavier Rovira, Marc Lopez, Charleine Zussy, James A. R. Dalton, Adèle Faucherre, Chris Jopling, Jean-Philippe Pin, Francisco Ciruela, Cyril Goudet, Jesús Giraldo, Pau Gorostiza, Amadeu Llebaria
Publié dans: ACS Central Science, Numéro 3/1, 2017, Page(s) 81-91, ISSN 2374-7943
Éditeur: American Chemical Society (ACS)
DOI: 10.1021/acscentsci.6b00353

Random versus maximum entropy models of neural population activity

Auteurs: Ulisse Ferrari, Tomoyuki Obuchi, Thierry Mora
Publié dans: Physical Review E, Numéro 95/4, 2017, ISSN 2470-0045
Éditeur: American Physical Society
DOI: 10.1103/PhysRevE.95.042321

Similarity in Neuronal Firing Regimes across Mammalian Species

Auteurs: Y. Mochizuki, T. Onaga, H. Shimazaki, T. Shimokawa, Y. Tsubo, R. Kimura, A. Saiki, Y. Sakai, Y. Isomura, S. Fujisawa, K.-i. Shibata, D. Hirai, T. Furuta, T. Kaneko, S. Takahashi, T. Nakazono, S. Ishino, Y. Sakurai, T. Kitsukawa, J. W. Lee, H. Lee, M. W. Jung, C. Babul, P. E. Maldonado, K. Takahashi, F. I. Arce-McShane, C. F. Ross, B. J. Sessle, N. G. Hatsopoulos, T. Brochier, A. Riehle, P. Chorley
Publié dans: Journal of Neuroscience, Numéro 36/21, 2016, Page(s) 5736-5747, ISSN 0270-6474
Éditeur: Society for Neuroscience
DOI: 10.1523/JNEUROSCI.0230-16.2016

Heterogeneous firing rate response of mouse layer V pyramidal neurons in the fluctuation-driven regime

Auteurs: Y. Zerlaut, B. Teleńczuk, C. Deleuze, T. Bal, G. Ouanounou, A. Destexhe
Publié dans: The Journal of Physiology, Numéro 594/13, 2016, Page(s) 3791-3808, ISSN 0022-3751
Éditeur: Blackwell Publishing Inc.
DOI: 10.1113/JP272317

Neuron-Based Control Mechanisms for a Robotic Arm and Hand

Auteurs: Nishant Singh, Christian Huyck, Vaibhav Gandhi, Alexander Jones
Publié dans: International Journal of Computer, Electrical, Automation, Control and Information Engineering, 2017, Page(s) 175-179
Éditeur: World Academy of Science, Engineering and Technology

Morphological Properties of Mass–Spring Networks for Optimal Locomotion Learning

Auteurs: Gabriel Urbain, Jonas Degrave, Benonie Carette, Joni Dambre, Francis Wyffels
Publié dans: Frontiers in Neurorobotics, Numéro 11, 2017, ISSN 1662-5218
Éditeur: Frontiers Research Foundation
DOI: 10.3389/fnbot.2017.00016

Enhanced Responsiveness and Low-Level Awareness in Stochastic Network States

Auteurs: Yann Zerlaut, Alain Destexhe
Publié dans: Neuron, Numéro 94/5, 2017, Page(s) 1002-1009, ISSN 0896-6273
Éditeur: Cell Press
DOI: 10.1016/j.neuron.2017.04.001

Connectomic Analysis of Brain Networks: Novel Techniques and Future Directions

Auteurs: J. Leonie Cazemier, Francisco Clascá, Paul H. E. Tiesinga
Publié dans: Frontiers in Neuroanatomy, Numéro 10, 2016, ISSN 1662-5129
Éditeur: Frontiers Research Foundation
DOI: 10.3389/fnana.2016.00110

Neuroscience of Childhood Poverty: Evidence of Impacts and Mechanisms as Vehicles of Dialog With Ethics

Auteurs: Sebastián J. Lipina, Kathinka Evers
Publié dans: Frontiers in Psychology, Numéro 8, 2017, ISSN 1664-1078
Éditeur: Frontiers Research Foundation
DOI: 10.3389/fpsyg.2017.00061

Wiring Economy of Pyramidal Cells in the Juvenile Rat Somatosensory Cortex

Auteurs: Laura Anton-Sanchez, Concha Bielza, Pedro Larrañaga, Javier DeFelipe
Publié dans: PLOS ONE, Numéro 11/11, 2016, Page(s) e0165915, ISSN 1932-6203
Éditeur: Public Library of Science
DOI: 10.1371/journal.pone.0165915

Mapping and Analysis of the Connectome of Sympathetic Premotor Neurons in the Rostral Ventrolateral Medulla of the Rat Using a Volumetric Brain Atlas

Auteurs: Bowen Dempsey, Sheng Le, Anita Turner, Phil Bokiniec, Radhika Ramadas, Jan G. Bjaalie, Clement Menuet, Rachael Neve, Andrew M. Allen, Ann K. Goodchild, Simon McMullan
Publié dans: Frontiers in Neural Circuits, Numéro 11, 2017, ISSN 1662-5110
Éditeur: Frontiers Research Foundation
DOI: 10.3389/fncir.2017.00009

The dynamics of resting fluctuations in the brain: metastability and its dynamical cortical core

Auteurs: Gustavo Deco, Morten L. Kringelbach, Viktor K. Jirsa, Petra Ritter
Publié dans: Scientific Reports, Numéro 7/1, 2017, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-017-03073-5

Symmetry Breaking in Space-Time Hierarchies Shapes Brain Dynamics and Behavior

Auteurs: Ajay S. Pillai, Viktor K. Jirsa
Publié dans: Neuron, Numéro 94/5, 2017, Page(s) 1010-1026, ISSN 0896-6273
Éditeur: Cell Press
DOI: 10.1016/j.neuron.2017.05.013

Assessment of antibody library diversity through next generation sequencing and technical error compensation

Auteurs: Marco Fantini, Luca Pandolfini, Simonetta Lisi, Michele Chirichella, Ivan Arisi, Marco Terrigno, Martina Goracci, Federico Cremisi, Antonino Cattaneo
Publié dans: PLOS ONE, Numéro 12/5, 2017, Page(s) e0177574, ISSN 1932-6203
Éditeur: Public Library of Science
DOI: 10.1371/journal.pone.0177574

Memory Retrieval from First Principles

Auteurs: M. Katkov, S. Romani, M. Tsodyks
Publié dans: Neuron, Numéro 94/5, 2017, Page(s) 1027-1032, ISSN 0896-6273
Éditeur: Cell Press
DOI: 10.1016/j.neuron.2017.03.048

Grand challenges for global brain sciences

Auteurs: Grillner, S.
Publié dans: F1000Research, Numéro 5, 2016, Page(s) 2873, ISSN 2046-1402
Éditeur: F1000 Research Ltd.
DOI: 10.12688/f1000research.10025.1

The missing link: Predicting connectomes from noisy and partially observed tract tracing data

Auteurs: Max Hinne, Annet Meijers, Rembrandt Bakker, Paul H. E. Tiesinga, Morten Mørup, Marcel A. J. van Gerven
Publié dans: PLOS Computational Biology, Numéro 13/1, 2017, Page(s) e1005374, ISSN 1553-7358
Éditeur: PLOS
DOI: 10.1371/journal.pcbi.1005374

Hierarchy of Information Processing in the Brain: A Novel ‘Intrinsic Ignition’ Framework

Auteurs: Gustavo Deco, Morten L. Kringelbach
Publié dans: Neuron, Numéro 94/5, 2017, Page(s) 961-968, ISSN 0896-6273
Éditeur: Cell Press
DOI: 10.1016/j.neuron.2017.03.028

Post-translational selective intracellular silencing of acetylated proteins with de novo selected intrabodies

Auteurs: Michele Chirichella, Simonetta Lisi, Marco Fantini, Martina Goracci, Mariantonietta Calvello, Rossella Brandi, Ivan Arisi, Mara D'Onofrio, Cristina Di Primio, Antonino Cattaneo
Publié dans: Nature Methods, Numéro 14/3, 2017, Page(s) 279-282, ISSN 1548-7091
Éditeur: Nature Publishing Group
DOI: 10.1038/nmeth.4144

Feasibility of deep learning for automatic parcellation of cortical regions in histological sections.

Auteurs: Spitzer H, Stibane D, Caspers S, Zilles K, Amunts K, Dickscheid T
Publié dans: 2016
Éditeur: Proceedings of the 22nd Annual Meeting of the Organization for Human Brain Mapping (OHBM)

Resting-state test-retest reliability over different preprocessing steps.

Auteurs: Varikuti D, Hoffstaedter F, Genon S, Schwender H, Reid A, Eickhoff S
Publié dans: 2016
Éditeur: Proc. 22nd Annual Meeting of the Organization for Human Brain Mapping (OHBM)

Multimodal evidence of a rostro-caudal and ventro-dorsal organization within the right dorsal promotor cortex.

Auteurs: Genon S, Li H, Fan L, Müller V, Cieslik E, Hoffstaedter F, Reid A, Langner R, Grefkes C, Fox P, Moebus S, Caspers S, Amunts K, Jiang T, Eickhoff S
Publié dans: 2016
Éditeur: Proceedings of the 22nd Annual Meeting of the Organization for Human Brain Mapping (OHBM)

Functional hierarchy in the optokinetic nystagmus network reveals functional specific sub-networks.

Auteurs: Hoffstaedter F, Reid A, Grefkes C, zu Eulenberg P, Eickhoff S
Publié dans: 2016
Éditeur: Proceedings of the 22nd Annual Meeting of the Organization for Human Brain Mapping (OHBM)

Anatomo-functional correlates of visual interhemispheric communication throughout infancy.

Auteurs: Adibpour P, Dehaene-Lambertz G, Dubois J
Publié dans: 2016
Éditeur: Proceedings of the 22nd Annual Meeting of the Organization for Human Brain Mapping (OHBM)

Sulcus-based alignment of infant brains to study cortical maturation with a AAL-like atlas.

Auteurs: Lebenberg J, Labit M, Auzias G, Kabdebon C, Leroy F, Hertz-Pannier L, Poupon C, Dehaene-Lambertz G, Mangin J-F, Dubois J
Publié dans: 2016
Éditeur: Proceedings of the 22nd Annual Meeting of the Organization for Human Brain Mapping (OHBM)

Cyto-, receptor and fiber architecture of the rat brain registered to the Waxholm Space.

Auteurs: Schubert N, Axer M, Schober M, Huynh A-M, Huysegoms M, Palomero-Gallagher N, Bjaalie J, Leergard T, Amunts K, Zilles K
Publié dans: 2016
Éditeur: Proceedings of the 22nd Annual Meeting of the Organization for Human Brain Mapping (OHBM)

Post-mortem mapping of the inner connectivity of the human hippocampus using diffusion MRI at 11.7T.

Auteurs: Beaujoin J, Boumezbeur F, Bernard J, Axer M, Mangin J-F, Poupon C
Publié dans: 2016
Éditeur: Proceedings of the 22nd annual meeting of the Organization for Human Brain Mapping (OHBM)

Molecular correlates of resting state networks

Auteurs: Palomero-Gallagher N, Schleicher A, Amunts K, Zilles K
Publié dans: 2016
Éditeur: Proceedings of the 22nd Annual Meeting of the Organization for Human Brain Mapping (OHBM)

Working memory in schizophrenia: a neuroimaging meta-analytic and VBM study.

Auteurs: Cieslik E, Müller V, Janssen L, Eickhoff S
Publié dans: 2016
Éditeur: Proceedings of the 22nd Annual Meeting of the Organization for Human Brain Mapping (OHBM)

ALE meta-analysis on altered brain activity in major depression revised: A problem of reproducibility.

Auteurs: Müller V, Cieslik E, Serbanescu I, Eickhoff S
Publié dans: 2016
Éditeur: Proceedings of the 22nd Annual Meeting of the Organization for Human Brain Mapping (OHBM)

Is age-related decline in cognition action control mediated by functional connectivity changes?

Auteurs: Langner R, Latz A, Cieslik E, Hoffstaedter F, Pundt N, Moebus S, Caspers S, Amunts K, Eickhoff SB
Publié dans: 2016
Éditeur: Proceedings of the 22nd Annual Meeting of the Organization for Human Brain Mapping (OHBM)

Neural correlates of age-related changes in cognitive action control.

Auteurs: Latz A, Hoffstaedter F, Cieslik E, Caspers S, Moebus S, Pundt N, Amunts K, Eickhoff S, Langner R
Publié dans: 2016
Éditeur: Proceedings of the 22nd Annual Meeting of the Organization for Human Brain Mapping (OHBM)

Comparing functional connectivity based predictive models across datasets

Auteurs: Kamalaker Dadi, Alexandre Abraham, Mehdi Rahim, Bertrand Thirion, Gael Varoquaux
Publié dans: 2016 International Workshop on Pattern Recognition in Neuroimaging (PRNI), 2016, Page(s) 1-4, ISBN 978-1-4673-6530-7
Éditeur: IEEE
DOI: 10.1109/PRNI.2016.7552359

The human dorsal premotor cortex – cytoarchitecture, maps and function.

Auteurs: Sigl B, Caspers S, Mohlberg H, Cieslik E, Eickhoff S, Amunts K
Publié dans: 2016
Éditeur: Proceedings of the 22nd Annual Meeting of the Organization for Human Brain Mapping (OHBM)

Multimodal connectivity mapping of the left anterior and posterior lateral prefrontal cortex.

Auteurs: Reid A, Bzdok D, Langner R, Fox P, Laird A, Amunts K, Eickhoff S, Eickhoff C
Publié dans: 2016
Éditeur: Proceedings of the 22nd Annual Meeting of the Organization for Human Brain Mapping (OHBM)

3D-reconstruction of cell distributions in the human subthalamic nucleus at 1 micron resolution

Auteurs: Bludau S, Dickscheid T, Iannilli F, Amunts K
Publié dans: 2016
Éditeur: Proceedings of the 22nd annual meeting of the Organization for Human Brain Mapping (OHBM)

Spotlight Imaging to explore high-resolution fiber orientation maps of the rat and human brain.

Auteurs: Gräßel D, Palomero-Gallagher N, Axer M, Amunts K, Zeineh M, Zilles K
Publié dans: 2016, Page(s) Poster 3604
Éditeur: Proceedings of the 22nd Annual Meeting of the Organization for Human Brain Mapping (OHBM)

Fast brain decoding with random sampling and random projections

Auteurs: Andres Hoyos-Idrobo, Gael Varoquaux, Bertrand Thirion
Publié dans: 2016 International Workshop on Pattern Recognition in Neuroimaging (PRNI), 2016, Page(s) 1-4, ISBN 978-1-4673-6530-7
Éditeur: IEEE
DOI: 10.1109/PRNI.2016.7552350

Astrocyte-neuron interactions in vitro and in vivo: evaluation of computational models.

Auteurs: Manninen T., Havela R., Linne M.-L.
Publié dans: 2016, Page(s) Abstract number: FENS-3317
Éditeur: 10th FENS Forum of Neuroscience in Copenhagen

Social-sparsity brain decoders: faster spatial sparsity

Auteurs: Gael Varoquaux, Matthieu Kowalski, Bertrand Thirion
Publié dans: 2016 International Workshop on Pattern Recognition in Neuroimaging (PRNI), 2016, Page(s) 1-4, ISBN 978-1-4673-6530-7
Éditeur: IEEE
DOI: 10.1109/PRNI.2016.7552352

Space odyssey - efficient exploration of scientific data

Auteurs: Mirjana Pavlovic, Eleni Tzirita Zacharatou, Darius Sidlauskas, Thomas Heinis, Anastasia Ailamaki
Publié dans: Proceedings of the Third International Workshop on Exploratory Search in Databases and the Web - ExploreDB '16, 2016, Page(s) 12-18, ISBN 9781-450343121
Éditeur: ACM Press
DOI: 10.1145/2948674.2948677

Pattern representation and recognition with accelerated analog neuromorphic systems

Auteurs: Mihai A. Petrovici, Sebastian Schmitt, Johann Klähn, David Stöckel, Anna Schroeder, Guillaume Bellec, Johannes Bill, Oliver Breitwieser, Ilja Bytschok, Andreas Grübl, Maurice Güttler, Andreas Hartel, Stephan Hartmann, Dan Husmann, Kai Husmann, Sebastian Jeltsch, Vitali Karasenko, Mitja Kleider, Christoph Koke, Alexander Kononov, Christian Mauch, Paul Müller, Johannes Partzsch, ..., Bernhard V
Publié dans: 2017
Éditeur: ISCAS 2017

Combination of two-photon fluorescence microscopy and label-free near-infrared reflectance: a new complementary approach for brain imaging

Auteurs: Irene Costantini, Anna Letizia Allegra Mascaro, Emilia Margoni, Giulio Iannello, Alessandro Bria, Leonardo Sacconi, Francesco S. Pavone
Publié dans: Biomedical Optics 2016, 2016, Page(s) JW3A.23, ISBN 978-1-943580-10-1
Éditeur: OSA
DOI: 10.1364/CANCER.2016.JW3A.23

Data and Commands Communication Protocol for Neuromorphic Platform Configuration

Auteurs: Alessandro Siino, Francesco Barchi, Sergio Davies, Gianvito Urgese, Andrea Acquaviva
Publié dans: 2016 IEEE 10th International Symposium on Embedded Multicore/Many-core Systems-on-Chip (MCSOC), 2016, Page(s) 23-30, ISBN 978-1-5090-3531-1
Éditeur: IEEE
DOI: 10.1109/MCSoC.2016.41

An Accelerated Analog Neuromorphic Hardware System Emulating NMDA- and Calcium-Based Non-Linear Dendrites

Auteurs: Johannes Schemmel, Laura Kriener, Paul Müller, Karlheinz Meier
Publié dans: 2017
Éditeur: IJCNN 2017

A Collaborative Simulation-Analysis Workflow for Computational Neuroscience Using HPC

Auteurs: Johanna Senk, Alper Yegenoglu, Olivier Amblet, Yury Brukau, Andrew Davison, David Roland Lester, Anna Lührs, Pietro Quaglio, Vahid Rostami, Andrew Rowley, Bernd Schuller, Alan Barry Stokes, Sacha Jennifer van Albada, Daniel Zielasko, Markus Diesmann, Benjamin Weyers, Michael Denker, Sonja Grün
Publié dans: 2017, Page(s) 243-256
Éditeur: Springer International Publishing
DOI: 10.1007/978-3-319-53862-4_21

High-Resolution Reconstruction of Whole Mouse Brain Vasculature with Light-Sheet Microscopy

Auteurs: Antonino Paolo Di Giovanna, Ludovico Silvestri, Marie Caroline Müllenbroich, Anna Letizia Allegra Mascaro, Leonardo Sacconi, Francesco S. Pavone
Publié dans: Biomedical Optics 2016, 2016, Page(s) BTu4D.4, ISBN 978-1-943580-10-1
Éditeur: OSA
DOI: 10.1364/BRAIN.2016.BTu4D.4

Assembly pointers for variable binding in networks of spiking neurons

Auteurs: Robert Legenstein, Christos H. Papadimitriou, Santosh Vempala, Wolfgang Maass
Publié dans: 2016
Éditeur: -

Effect of Heterogeneity on Decorrelation Mechanisms in Spiking Neural Networks: A Neuromorphic-Hardware Study

Auteurs: Pfeil T, Jordan J, Tetzlaff T, Grübl A, Schemmel J, Diesmann M, Meier K
Publié dans: 2016
Éditeur: G-Node
DOI: 10.12751/nncn.bc2016.0166

Label-free NIR reflectance imaging as a complimentary tool for two-photon fluorescence microscopy: multimodal investigation of stroke (Conference Presentation)

Auteurs: Anna Letizia Allegra Mascaro, Irene Costantini, Emilia Margoni, Giulio Iannello, Alessandro Bria, Leonardo Sacconi, Francesco S. Pavone
Publié dans: Multiphoton Microscopy in the Biomedical Sciences XVI, 2016, Page(s) 97121K
Éditeur: SPIE
DOI: 10.1117/12.2208886

Morphing Image Masks for Stacked Histological Sections Using Laplace’s Equation

Auteurs: Martin Schober, Markus Axer, Marcel Huysegoms, Nicole Schubert, Katrin Amunts, Timo Dickscheid
Publié dans: 2017, Page(s) 146-151
Éditeur: Springer Berlin Heidelberg
DOI: 10.1007/978-3-662-49465-3_27

TRANSFORMERS: Robust spatial joins on non-uniform data distributions

Auteurs: Mirjana Pavlovic, Thomas Heinis, Farhan Tauheed, Panagiotis Karras, Anastasia Ailamaki
Publié dans: 2016 IEEE 32nd International Conference on Data Engineering (ICDE), 2016, Page(s) 673-684, ISBN 978-1-5090-2020-1
Éditeur: IEEE
DOI: 10.1109/ICDE.2016.7498280

Towards automated neuron tracing via global and local 3D image analysis

Auteurs: Ludovica Acciai, Irene Costantini, Francesco Saverio Pavone, Valerio Conti, Renzo Guerrini, Paolo Soda, Giulio Iannello
Publié dans: 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI), 2016, Page(s) 322-325, ISBN 978-1-4799-2349-6
Éditeur: IEEE
DOI: 10.1109/ISBI.2016.7493274

Mapping whole-brain activity with cellular resolution by light-sheet microscopy and high-throughput image analysis (Conference Presentation)

Auteurs: Ludovico Silvestri, Nikita Rudinskiy, Marco Paciscopi, Marie Caroline Müllenbroich, Irene Costantini, Leonardo Sacconi, Paolo Frasconi, Bradley T. Hyman, Francesco S. Pavone
Publié dans: Clinical and Translational Neurophotonics; Neural Imaging and Sensing; and Optogenetics and Optical Manipulation, 2016, Page(s) 969012
Éditeur: SPIE
DOI: 10.1117/12.2208603

True random number generation from bang-bang ADPLL jitter

Auteurs: Felix Neumarker, Sebastian Hoppner, Andreas Dixius, Christian Mayr
Publié dans: 2016 IEEE Nordic Circuits and Systems Conference (NORCAS), 2016, Page(s) 1-5, ISBN 978-1-5090-1095-0
Éditeur: IEEE
DOI: 10.1109/NORCHIP.2016.7792875

Neuromorphic Hardware In The Loop: Training a Deep Spiking Network on the BrainScaleS Wafer-Scale System

Auteurs: Sebastian Schmitt, Johann Klaehn, Guillaume Bellec, Andreas Gruebl, Maurice Guettler, Andreas Hartel, Stephan Hartmann, Dan Husmann, Kai Husmann, Vitali Karasenko, Mitja Kleider, Christoph Koke, Christian Mauch, Eric Mueller, Paul Mueller, Johannes Partzsch, Mihai A. Petrovici, Stefan Schiefer, Stefan Scholze, Bernhard Vogginger, Robert Legenstein, Wolfgang Maass, Christian Mayr, Johannes Schemmel
Publié dans: 2017
Éditeur: IJCNN

Spline-Based Multimodal Image Registration of 3D PLI Data of the Human Brain

Auteurs: Sharib Ali, Karl Rohr, David Gräßel, Philipp Schlömer, Katrin Amunts, Roland Eils, Markus Axer, Stefan Wörz
Publié dans: 2017, Page(s) 268-273
Éditeur: Springer Berlin Heidelberg
DOI: 10.1007/978-3-662-54345-0_61

A highly tunable 65-nm CMOS LIF neuron for a large scale neuromorphic system

Auteurs: Syed Ahmed Aamir, Paul Muller, Andreas Hartel, Johannes Schemmel, Karlheinz Meier
Publié dans: ESSCIRC Conference 2016: 42nd European Solid-State Circuits Conference, 2016, Page(s) 71-74, ISBN 978-1-5090-2972-3
Éditeur: IEEE
DOI: 10.1109/ESSCIRC.2016.7598245

Adaptive gaze stabilization through cerebellar internal models in a humanoid robot

Auteurs: Lorenzo Vannucci, Silvia Tolu, Egidio Falotico, Paolo Dario, Henrik Hautop Lund, Cecilia Laschi
Publié dans: 2016 6th IEEE International Conference on Biomedical Robotics and Biomechatronics (BioRob), 2016, Page(s) 25-30, ISBN 978-1-5090-3287-7
Éditeur: IEEE
DOI: 10.1109/BIOROB.2016.7523593

Towards a framework for end-to-end control of a simulated vehicle with spiking neural networks

Auteurs: Jacques Kaiser, J. Camilo Vasquez Tieck, Christian Hubschneider, Peter Wolf, Michael Weber, Michael Hoff, Alexander Friedrich, Konrad Wojtasik, Arne Roennau, Ralf Kohlhaas, Rudiger Dillmann, J. Marius Zollner
Publié dans: 2016 IEEE International Conference on Simulation, Modeling, and Programming for Autonomous Robots (SIMPAR), 2016, Page(s) 127-134, ISBN 978-1-5090-4616-4
Éditeur: IEEE
DOI: 10.1109/SIMPAR.2016.7862386

Robustness from structure: Inference with hierarchical spiking networks on analog neuromorphic hardware

Auteurs: Mihai A. Petrovici, Anna Schroeder, Oliver Breitwieser, Andreas Grübl, Johannes Schemmel, Karlheinz Meier
Publié dans: 2017
Éditeur: IJCNN 2017

Sequential decision making based on emergent emotion for a humanoid robot

Auteurs: Murat Kirtay, Lorenzo Vannucci, Egidio Falotico, Erhan Oztop, Cecilia Laschi
Publié dans: 2016 IEEE-RAS 16th International Conference on Humanoid Robots (Humanoids), 2016, Page(s) 1101-1106, ISBN 978-1-5090-4718-5
Éditeur: IEEE
DOI: 10.1109/HUMANOIDS.2016.7803408

Rehabilitation-triggered cortical plasticity after stroke: in vivo imaging at multiple scales (Conference Presentation)

Auteurs: Anna Letizia Allegra Mascaro, Emilia Conti, Stefano Lai, Cristina Spalletti, Antonino Paolo Di Giovanna, Claudia Alia, Alessandro Panarese, Leonardo Sacconi, Silvestro Micera, Matteo Caleo, Francesco S. Pavone
Publié dans: Neural Imaging and Sensing, 2017, Page(s) 100510L
Éditeur: SPIE
DOI: 10.1117/12.2250860

Rewriting Minimisations for Efficient Ontology-Based Query Answering

Auteurs: Tassos Venetis, Giorgos Stoilos, Vasilis Vassalos
Publié dans: 2016 IEEE 28th International Conference on Tools with Artificial Intelligence (ICTAI), 2016, Page(s) 1095-1102, ISBN 978-1-5090-4459-7
Éditeur: IEEE
DOI: 10.1109/ICTAI.2016.0168

Multi Scale Morpho-functional Characterization of Damage and Rehabilitation After Stroke

Auteurs: Francesco S. Pavone
Publié dans: Frontiers in Optics 2016, 2016, Page(s) FTh4D.1, ISBN 978-1-943580-19-4
Éditeur: OSA
DOI: 10.1364/FIO.2016.FTh4D.1

Modeling and simulation of multi-scale spiking neuronal networks

Auteurs: Schmidt M
Publié dans: 2016
Éditeur: RWTH Aachen University Aachen

Dimensionality reduction for mathematical models in neuroscience.

Auteurs: Lehtimäki M
Publié dans: 2016
Éditeur: Tampere University of Technology

Pick J, Erhebung und Analyse von Nutzeranforderungen an einen Editor für Metadaten in den Neurowissenschaften

Auteurs: Pick, Jana
Publié dans: 2016
Éditeur: RWTH Aachen

Connectivity structure induced dynamics and correlations in spiking neural networks

Auteurs: Bos, H.
Publié dans: 2017
Éditeur: RWTH Aachen University

Nonlinear synaptic integration on dendrites of striatal medium spiny neuron – a computational study

Auteurs: Du, K.
Publié dans: 2017
Éditeur: Karolinska Institutet

CaMKII activation supports reward-based neural network optimization through Hamiltonian sampling

Auteurs: Yu Z, Kappel D, Legenstein R, Song S, Chen F, and Maass W
Publié dans: 2016
Éditeur: arXiv.org

EU citizens want to be informed of the use of their personal data

Auteurs: Bitsch L
Publié dans: 2016
Éditeur: Danish Board of Technology Foundation

Learning Active Learning from Real and Synthetic Data

Auteurs: Konyushkova K, Sznitman R, Fua P
Publié dans: arXiv, 2017
Éditeur: arXiv

Ethics Management and Responsible Research and Innovation in the Human Brain Project

Auteurs: Rainey, Stephen ; Stahl, Bernd Carsten ; Shaw, Mark Christopher ; Reinsborough, Michael
Publié dans: Handbook - Responsible Innovation: A Global Resource, 2017
Éditeur: Edward Elgar Publishing Ltd

Including Gap Junctions into Distributed Neuronal Network Simulations

Auteurs: Jan Hahne, Moritz Helias, Susanne Kunkel, Jun Igarashi, Itaru Kitayama, Brian Wylie, Matthias Bolten, Andreas Frommer, Markus Diesmann
Publié dans: 2016, Page(s) 43-57
Éditeur: Springer International Publishing
DOI: 10.1007/978-3-319-50862-7_4

High-Resolution Fiber and Fiber Tract Imaging Using Polarized Light Microscopy in the Human, Monkey, Rat, and Mouse Brain

Auteurs: Karl Zilles, Nicola Palomero-Gallagher, David Gräßel, Philipp Schlömer, Markus Cremer, Roger Woods, Katrin Amunts, Markus Axer
Publié dans: 2016, Page(s) 369-389
Éditeur: Elsevier
DOI: 10.1016/B978-0-12-801393-9.00018-9

Retina color-opponency based pursuit implemented through spiking neural networks in the Neurorobotics Platform

Auteurs: Alessandro Ambrosano, Lorenzo Vannucci, Ugo Albanese, Murat Kirtay, Egidio Falotico, Pablo Martínez-Cañada, Georg Hinkel, Jacques Kaiser, Stefan Ulbrich, Paul Levi, Christian Morillas, Alois Knoll, Marc-Oliver Gewaltig, Cecilia Laschi
Publié dans: 2016, Page(s) 16-27
Éditeur: Springer International Publishing
DOI: 10.1007/978-3-319-42417-0_2

Finite-Difference Time-Domain Simulation for Three-Dimensional Polarized Light Imaging

Auteurs: Miriam Menzel, Markus Axer, Hans De Raedt, Kristel Michielsen
Publié dans: 2016, Page(s) 73-85
Éditeur: Springer International Publishing
DOI: 10.1007/978-3-319-50862-7_6

Noisy Softplus: A Biology Inspired Activation Function

Auteurs: Qian Liu, Steve Furber
Publié dans: 2016, Page(s) 405-412
Éditeur: Springer International Publishing
DOI: 10.1007/978-3-319-46681-1_49

Towards Large-Scale Fiber Orientation Models of the Brain – Automation and Parallelization of a Seeded Region Growing Segmentation of High-Resolution Brain Section Images

Auteurs: Anna Lührs, Oliver Bücker, Markus Axer
Publié dans: 2016, Page(s) 28-42
Éditeur: Springer International Publishing
DOI: 10.1007/978-3-319-50862-7_3

Brain Imaging and Privacy Concerns

Auteurs: Salles A
Publié dans: Farisco M Evers K Neurotechnology and Direct Brain Communication, 2016
Éditeur: Routledge

NESTML: a modeling language for spiking neurons

Auteurs: Plotnikov D, Blundell I, Ippen T, Eppler JM, Rumpe B, Morrison A.
Publié dans: Lecture Notes in Neuroinformatics, 2017
Éditeur: Gesellschaft für Informatik

Eye-head stabilization mechanism for a humanoid robot tested on human inertial data

Auteurs: Lorenzo Vannucci, Egidio Falotico, Silvia Tolu, Paolo Dario, Henrik Hautop Lund, Cecilia Laschi
Publié dans: 2016, Page(s) 341-352
Éditeur: Springer International Publishing
DOI: 10.1007/978-3-319-42417-0_31

Comparative Analysis of Receptor Types That Identify Primary Cortical Sensory Areas

Auteurs: K. Zilles, N. Palomero-Gallagher
Publié dans: 2017, Page(s) 225-245
Éditeur: Elsevier
DOI: 10.1016/B978-0-12-804042-3.00043-9

Visual Target Sequence Prediction via Hierarchical Temporal Memory Implemented on the iCub Robot

Auteurs: Murat Kirtay, Egidio Falotico, Alessandro Ambrosano, Ugo Albanese, Lorenzo Vannucci, Cecilia Laschi
Publié dans: 2016, Page(s) 119-130
Éditeur: Springer International Publishing
DOI: 10.1007/978-3-319-42417-0_12

Immunogold Protein Localization on Grid-Glued Freeze-Fracture Replicas

Auteurs: Harumi Harada, Ryuichi Shigemoto
Publié dans: 2016, Page(s) 203-216
Éditeur: Springer New York
DOI: 10.1007/978-1-4939-6352-2_12

Droits de propriété intellectuelle

Multiprozessorsystem mit dynamischer Spannungs- und Frequenzskalierung

Numéro de demande/publication: DE 10 2017 128 711.6
Date: 2017-05-24

A METHOD OF MODULATING EPILEPTOGENICITY IN A PATIENT'S BRAIN

Numéro de demande/publication: EP 16763307
Date: 2016-07-18

METHOD FOR GENERATING TRUE RANDOM NUMBERS ON A MULTIPROCESSOR SYSTEM AND THE SAME

Numéro de demande/publication: EP 16190261
Date: 2016-09-23

Method for generating true random numbers on a multiprocessor system and the same

Numéro de demande/publication: US 15/272,550, 2016
Date: 2016-09-22

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