Living Architecture

Resultado final

The production of a 2D array of bioreactors with sensors and controllers that collectively perceives its environment makes decision about reconfiguration of the reactors contents and performs basic computational primitives with their closest neighbours

LIAR hardware

LIAR hardware, of MFCs running in both large partition panels and active wall sections capable of performing wastewater treatment, generating electricity and producing biomass.

ODACS part 2 and updates

These goals extend the project objectivesExploitationQuality control advisory board checksevaluation process and troubleshooting strategyOutreach launch website event schedule professional and publicDesign intentions update hardware software wetware

Progress Report Period 1

Period 1 progress report

Bioreactor Implementation Report

Final Report

Progress Report Period 2

Period 2 progress report

ODACS part 3

Addition to ODACS with schedule for integration of bioreactors (and evaluation of progress) through design/computation/experimental work

ODACS part 1

Outline Design and Contact Specification Document these goals build the team objectivesDesign intentions hardware software wetwareImplementation strategy meeting rota procurement assemblyManagement website document management system communications system

Final Report

Compiling of final report

LIAR website

Creation and running of LIAR website

Publicaciones

FLYCOP: metabolic modeling-based analysis and engineering microbial communities

Autores: Beatriz García-Jiménez, José Luis García, Juan Nogales
Publicado en: Bioinformatics, Edición 34/17, 2018, Página(s) i954-i963, ISSN 1367-4803
Editor: Oxford University Press
DOI: 10.1093/bioinformatics/bty561

Quantifying dynamic mechanisms of auto-regulation in Escherichia coli with synthetic promoter in response to varying external phosphate levels

Autores: Cansu Uluşeker, Jesús Torres-Bacete, José L. García, Martin M. Hanczyc, Juan Nogales, Ozan Kahramanoğulları
Publicado en: Scientific Reports, Edición 9/1, 2019, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-018-38223-w

Living architecture: workshop report from the European Conference on Artificial Life, Lyon, France, 4 September 2017

Autores: Martin M Hanczyc, Barbara Imhof, Andrew Adamatzky
Publicado en: Adaptive Behavior, Edición 26/2, 2018, Página(s) 85-88, ISSN 1059-7123
Editor: SAGE Publications
DOI: 10.1177/1059712318761518

Regenerated silk fibroin membranes as separators for transparent microbial fuel cells

Autores: Grzegorz Pasternak, Yuejiao Yang, Bruno Bosquiroli Santos, Federico Brunello, Martin M. Hanczyc, Antonella Motta
Publicado en: Bioelectrochemistry, Edición 126, 2019, Página(s) 146-155, ISSN 1567-5394
Editor: Elsevier BV
DOI: 10.1016/j.bioelechem.2018.12.004

Novel method for detecting and quantifying phenol with transient response of glycolytic oscillations of synchronised yeast cells

Autores: Grzegorz Pasternak, Martin M. Hanczyc
Publicado en: Sensing and Bio-Sensing Research, Edición 22, 2019, Página(s) 100259, ISSN 2214-1804
Editor: Elsevier BV
DOI: 10.1016/j.sbsr.2019.100259

Artificial neural network simulating microbial fuel cells with different membrane materials and electrode configurations

Autores: Michail-Antisthenis Tsompanas, Jiseon You, Lauren Wallis, John Greenman, Ioannis Ieropoulos
Publicado en: Journal of Power Sources, Edición 436, 2019, Página(s) 226832, ISSN 0378-7753
Editor: Elsevier BV
DOI: 10.1016/j.jpowsour.2019.226832

Modelling the energy harvesting from ceramic-based microbial fuel cells by using a fuzzy logic approach

Autores: Alberto de Ramón-Fernández, M.J. Salar-García, Daniel Ruiz-Fernández, J. Greenman, I. Ieropoulos
Publicado en: Applied Energy, Edición 251, 2019, Página(s) 113321, ISSN 0306-2619
Editor: Pergamon Press Ltd.
DOI: 10.1016/j.apenergy.2019.113321

Modelling Microbial Fuel Cells using lattice Boltzmann methods

Autores: Michail-Antisthenis Tsompanas, Andy Adamatzky, Ioannis Ieropoulos, Neil Phillips, Georgios Ch. Sirakoulis, John Greenman
Publicado en: IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2018, Página(s) 1-1, ISSN 1545-5963
Editor: IEEE Computer Society
DOI: 10.1109/tcbb.2018.2831223

Cellular non-linear network model of microbial fuel cell

Autores: Michail-Antisthenis Tsompanas, Andrew Adamatzky, Ioannis Ieropoulos, Neil Phillips, Georgios Ch. Sirakoulis, John Greenman
Publicado en: Biosystems, Edición 156-157, 2017, Página(s) 53-62, ISSN 0303-2647
Editor: Elsevier BV
DOI: 10.1016/j.biosystems.2017.04.003

Towards implementation of cellular automata in Microbial Fuel Cells

Autores: Michail-Antisthenis I. Tsompanas, Andrew Adamatzky, Georgios Ch. Sirakoulis, John Greenman, Ioannis Ieropoulos
Publicado en: PLOS ONE, Edición 12/5, 2017, Página(s) e0177528, ISSN 1932-6203
Editor: Public Library of Science
DOI: 10.1371/journal.pone.0177528

Genexput: A rapid and standarised method for large genome expansion of Pseudomonas putida

Autores: Mesa-Galán, A., Blázquez, B., Nogales, J.
Publicado en: Biosaia: Revista de los másteres de Biotecnología Sanitaria y Biotecnología Ambiental, Industrial y Alimentaria, Edición vol. 1, no 8, 2019, ISSN 2254-3821
Editor: Universidad Pablo de Olavide

Engineering self-regulated synthetic gene expression systems and its application on controlled protein expression

Autores: Ronco-Campaña, A.; Torres-Bacete, J.; Nogales, J.
Publicado en: Biosaia: Revista de los másteres de Biotecnología Sanitaria y Biotecnología Ambiental, Industrial y Alimentaria, Edición vol. 1, no 8., 2019, ISSN 2254-3821
Editor: Universidad Pablo de Olavide

The inclusion of side metabolic reactions in the genome-scale metabolic model of Pseudomonas putida highlights to underground metabolism as key player in metabolic robustness

Autores: Canalejo, F. J.; Nogales, J.
Publicado en: Biosaia: Revista de los másteres de Biotecnología Sanitaria y Biotecnología Ambiental, Industrial y Alimentaria, Edición vol. 1, no 8, 2019, ISSN 2254-3821
Editor: Universidad Pablo de Olavide

Soft Living Architecture - An Alternative View of Bio-informed Practice

Autores: Armstrong,R
Publicado en: 2018, ISBN 978-1-3500-1133-5
Editor: BLOOMSBURY ACADEMIC
DOI: 10.5040/9781350011366

Liquid Life: On Nonlinear Materiality

Autores: Armstrong, R., Ferracina, S., Hughes, R.
Publicado en: 2019
Editor: Punctum
DOI: 10.21983/p3.0246.1.00

Experimental Architecture - Designing the Unknown

Autores: Armstrong, R
Publicado en: 2019, ISBN 9781-351272483
Editor: ROUTLEDGE
DOI: 10.4324/9781351272483

Quantifying Information Flow in Chemical Reaction Networks

Autores: Ozan Kahramanoğulları
Publicado en: Algorithms for Computational Biology, Edición 10252, 2017, Página(s) 155-166, ISBN 978-3-319-58162-0
Editor: Springer International Publishing
DOI: 10.1007/978-3-319-58163-7_11

Living Architecture (LIAR): Metabolically engineered building units

Autores: Armstrong R, Ferracina S, Caldwell G, Ieropoulos I, Rimbu G, Adamatzky A, Phillips N, De Lucrezia D, Imhof B, Hanczyc MM, Nogales J, Garcia J.
Publicado en: In: Heisel, F; Hebel, D, ed. Cultivated Building Materials: Industrialized Natural Resources for Architecture and Construction., 2017
Editor: Birkhauser

A dynamic model of the phosphate response system with synthetic promoters in Escherichia coli

Autores: Cansu Uluşeker, Jesus Torres, José L. García, Martin M. Hanczyc, Juan Nogales, Ozan Kahramanoğulları
Publicado en: Proceedings of the 14th European Conference on Artificial Life ECAL 2017, 2017, Página(s) 412-419, ISBN 978-0-262-34633-7
Editor: MIT Press
DOI: 10.7551/ecal_a_069

Mechanisms of Switching Response to External Phosphate Levels in Escheria coli

Autores: Cansu Uluşeker, Martin M. Hanczyc, Ozan Kahramanoğulları
Publicado en: The 2018 Conference on Artificial Life, 2018, Página(s) 633-640
Editor: MIT Press
DOI: 10.1162/isal_a_00116

QUANTIFYING MECHANISMS OF BACTERIAL PHOSPHATE ECONOMY FOR SYNTHETIC APPS

Autores: Kahramanog ̆ulları O.,. Hanczyc M.M.
Publicado en: enth Conference Dynamical Systems Applied to Biology and Natural Sciences DSABNS, 2019, ISBN 978-989-98750-6-7
Editor: DSABNS

Enumerating Dominant Pathways in Biological Networks by Information Flow Analysis

Autores: Kahramanoğulları O.
Publicado en: International Conference on Algorithms for Computational Biology, Edición 11488, 2019, Página(s) 39-51, ISBN 978-3-030-18173-4
Editor: Springer
DOI: 10.1007/978-3-030-18174-1_3

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Resultado final

Publicaciones

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