Characterizing Adaptation and Migration Events with Modern and Ancient Genomes

Project Information

CAMERA

Grant agreement ID: 679330

DOI 10.3030/679330

Project closed

EC signature date 3 May 2016

Start date 1 August 2016

End date 31 July 2023

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost € 1 498 478,00

EU contribution € 1 498 478,00

Coordinated by

UNIVERSITE DE LAUSANNE
Switzerland

Publications

Peer reviewed articles (9)

A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data

Author(s): J Víctor Moreno-Mayar, Thorfinn Sand Korneliussen, Jyoti Dalal, Gabriel Renaud, Anders Albrechtsen, Rasmus Nielsen, Anna-Sapfo Malaspinas
Published in: Bioinformatics, Issue 36/3, 2019, Page(s) 828-841, ISSN 1367-4803
Publisher: Oxford University Press
DOI: 10.1093/bioinformatics/btz660

Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans

Author(s): J. Víctor Moreno-Mayar, Ben A. Potter, Lasse Vinner, Matthias Steinrücken, Simon Rasmussen, Jonathan Terhorst, John A. Kamm, Anders Albrechtsen, Anna-Sapfo Malaspinas, Martin Sikora, Joshua D. Reuther, Joel D. Irish, Ripan S. Malhi, Ludovic Orlando, Yun S. Song, Rasmus Nielsen, David J. Meltzer, Eske Willerslev
Published in: Nature, Issue 553/7687, 2018, Page(s) 203-207, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/nature25173

Genomic insights into the origin and diversification of late maritime hunter-gatherers from the Chilean Patagonia

Author(s): Constanza de la Fuente, María C. Ávila-Arcos, Jacqueline Galimany, Meredith L. Carpenter, Julian R. Homburger, Alejandro Blanco, Paloma Contreras, Diana Cruz Dávalos, Omar Reyes, Manuel San Roman, Andrés Moreno-Estrada, Paula F. Campos, Celeste Eng, Scott Huntsman, Esteban G. Burchard, Anna-Sapfo Malaspinas, Carlos D. Bustamante, Eske Willerslev, Elena Llop, Ricardo A. Verdugo, Mauricio Moraga
Published in: Proceedings of the National Academy of Sciences, Issue 115/17, 2018, Page(s) E4006-E4012, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.1715688115

The prehistoric peopling of Southeast Asia

Author(s): Hugh McColl, Fernando Racimo, Lasse Vinner, Fabrice Demeter, Takashi Gakuhari, J. Víctor Moreno-Mayar, George van Driem, Uffe Gram Wilken, Andaine Seguin-Orlando, Constanza de la Fuente Castro, Sally Wasef, Rasmi Shoocongdej, Viengkeo Souksavatdy, Thongsa Sayavongkhamdy, Mohd Mokhtar Saidin, Morten E. Allentoft, Takehiro Sato, Anna-Sapfo Malaspinas, Farhang A. Aghakhanian, Thorfinn Korneliussen,
Published in: Science, Issue 361/6397, 2018, Page(s) 88-92, ISSN 0036-8075
Publisher: American Association for the Advancement of Science
DOI: 10.1126/science.aat3628

In-solution Y-chromosome capture-enrichment on ancient DNA libraries

Author(s): Diana I. Cruz-Dávalos, María A. Nieves-Colón, Alexandra Sockell, G. David Poznik, Hannes Schroeder, Anne C. Stone, Carlos D. Bustamante, Anna-Sapfo Malaspinas, María C. Ávila-Arcos
Published in: BMC Genomics, Issue 19/1, 2018, ISSN 1471-2164
Publisher: BioMed Central
DOI: 10.1186/s12864-018-4945-x

Human bony labyrinth is an indicator of population history and dispersal from Africa

Author(s): Marcia S. Ponce de León, Toetik Koesbardiati, John David Weissmann, Marco Milella, Carlos S. Reyna-Blanco, Gen Suwa, Osamu Kondo, Anna-Sapfo Malaspinas, Tim D. White, Christoph P. E. Zollikofer
Published in: Proceedings of the National Academy of Sciences, Issue 115/16, 2018, Page(s) 4128-4133, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.1717873115

Decline of genetic diversity in ancient domestic stallions in Europe

Author(s): Saskia Wutke, Edson Sandoval-Castellanos, Norbert Benecke, Hans-Jürgen Döhle, Susanne Friederich, Javier Gonzalez, Michael Hofreiter, Lembi Lõugas, Ola Magnell, Anna-Sapfo Malaspinas, Arturo Morales-Muñiz, Ludovic Orlando, Monika Reissmann, Alexandra Trinks, Arne Ludwig
Published in: Science Advances, Issue 4/4, 2018, Page(s) eaap9691, ISSN 2375-2548
Publisher: American Association for the Advancement of Science
DOI: 10.1126/sciadv.aap9691

Early human dispersals within the Americas

Author(s): J. Víctor Moreno-Mayar, Lasse Vinner, Peter de Barros Damgaard, Constanza de la Fuente, Jeffrey Chan, Jeffrey P. Spence, Morten E. Allentoft, Tharsika Vimala, Fernando Racimo, Thomaz Pinotti, Simon Rasmussen, Ashot Margaryan, Miren Iraeta Orbegozo, Dorothea Mylopotamitaki, Matthew Wooller, Clement Bataille, Lorena Becerra-Valdivia, David Chivall, Daniel Comeskey, Thibaut Devièse, Donald K. Grays
Published in: Science, Issue 362/6419, 2018, Page(s) eaav2621, ISSN 0036-8075
Publisher: American Association for the Advancement of Science
DOI: 10.1126/science.aav2621

Ancient nuclear genomes enable repatriation of Indigenous human remains

Author(s): Joanne L. Wright, Sally Wasef, Tim H. Heupink, Michael C. Westaway, Simon Rasmussen, Colin Pardoe, Gudju Gudju Fourmile, Michael Young, Trish Johnson, Joan Slade, Roy Kennedy, Patsy Winch, Mary Pappin, Tapij Wales, William “Badger” Bates, Sharnie Hamilton, Neville Whyman, Sheila van Holst Pellekaan, Peter J. McAllister, Paul S.C. Taçon, Darren Curnoe, Ruiqiang Li, Craig Millar, Sankar Subrama
Published in: Science Advances, Issue 4/12, 2018, Page(s) eaau5064, ISSN 2375-2548
Publisher: American Association for the Advancement of Science
DOI: 10.1126/sciadv.aau5064

Non-peer reviewed articles (1)

Mapache: a flexible pipeline to map ancient DNA

Author(s): Samuel Neuenschwander 1 2 , Diana I Cruz Dávalos 1 3 , Lucas Anchieri 1 3 , Bárbara Sousa da Mota 1 3 , Davide Bozzi 1 3 , Simone Rubinacci 1 3 , Olivier Delaneau 1 3 , Simon Rasmussen 4 , Anna-Sapfo Malaspinas 1 3
Published in: Bioinformatics, 2023, ISSN 1367-4803
Publisher: Oxford University Press
DOI: 10.1093/bioinformatics/btad028