Deliverables
Training event 4
TECH3 Key Enabling TechnologiesTRANS2 Managing Innovation and Knowledge
CHALL2CHALL2 Exploitation plan Each team will develop an exploitation plan with regard to the results of their WP applying their knowledge and skills acquired in TRANS2. This will increase their understanding of business development and associated aspects.
Training event 7TRANS4: Acquisition of R&D funding
Training event 6CLIN3: Impact on patient selection & trial enrichment
Training event 5TRANS3: Communicating with your Stakeholders
Training event 3CLIN2 Role of NGS in the clinical environment
CHALL1CHALL1 Research planThe four ESR teams are given the assignment to draft a clear research plan on how to validate analytical clinical the results of their WP and report on ethical and regulatory aspects applying their knowledge of TRANS1 This will help them understand the validation and regulatory trajectory and associated time frame of diagnostic test development
CHALL4CHALL4 Grant proposal (individual) Each ESR will write, individually a (fictitious) grant proposal (2 A4) for his/her IPR to the EU, based on a (fictitious) call for proposals on “novel ideas for advanced in-vitro diagnostics”, applying the knowledge and skills acquired in TRANS4. The grant proposals will be discussed and ranked by the PIs of the participants and the trainer of TRANS4.
Training event 1CLIN1 Clinical management of infectious diseasesTECH1 BioAssay Development
CHALL3CHALL3 Communication plan The four ESR teams will have to define a communication strategy for disseminating the results of their research to their stakeholders, making use of the media of their choice and applying their knowledge and skills of TRANS3.
Training event 2TECH2 Sample PreparationTRANS1 Addressing Ethical Regulatory and Legal aspects
ND4ID White paperthe ND4ID network as a whole will develop an ND4ID White Paper that describes the clinical needs addressed, the contributions made by ND4ID and the remaining challenges for improving our capabilities to reduce the public health and economic burden of infectious diseases and antimicrobial resistance through cheaper, easier, POC IVDs, and the need for the ND4ID way of teaching and training researchers in this field of science.
Scientific publications of ESRsEBug as a means to reaching out to young students The eBug project wwwebugeu is a DG SANCO funded project established in 2006 and involves a consortium of 28 countries in Belgium led by partner 1 UA The project aims to educate children and young people at junior and senior school level about microbiology hygiene and the spread treatment and prevention of infectious diseases Our ESRs will make use of this platform to develop 3 educational packages lesson packs fact sheets quiz games home science project related to IVDs As the Ebug website and project are already well known throughout Europe and beyond this platform will ensure optimal outreach and visibility of the project at our target group of young future scientists Simultaneously this will teach the ESRs how to translate their research into an easytounderstand format and provides them with multimedia training
ND4ID website, Twitter account and Facebook account with contentND4ID website and social media presence of ND4ID and our ESRs A public website linked to a LinkedIn Facebook and Twitter account will be developed and maintained and will serve as our one to many communication tool informing all target groups about the project its goals and activities It will have links to related projects such as RAPPID PREPARE COMPARE ROUTINE COMBACTE ND4BB and will serve as the repository for teaching and training material used during the training events electronic versions of publications open access proceedings from the International Conference PhD manuscripts and other nonconfidential project related information The website and social media will contain elements such as ESR blogs and vlogs giving the audience a first hand account of their experiences The website will also have a protected section containing working spaces and repositories for the network participants eg for sharing of contact details meeting minutes organisation of training events analysis protocols preliminary reports publications in progress
Publications
Author(s):
Michael Biggel, Basil B. Xavier, James R. Johnson, Karen L. Nielsen, Niels Frimodt-Møller, Veerle Matheeussen, Herman Goossens, Pieter Moons, Sandra Van Puyvelde
Published in:
Nature Communications, Issue 11/1, 2020, ISSN 2041-1723
Publisher:
Nature Publishing Group
DOI:
10.1038/s41467-020-19714-9
Author(s):
Nicolas Kieffer, Guilhem Royer, Jean-Winoc Decousser, Anne-Sophie Bourrel, Mattia Palmieri, Jose-Manuel Ortiz De La Rosa, Hervé Jacquier, Erick Denamur, Patrice Nordmann, Laurent Poirel
Published in:
Antimicrobial Agents and Chemotherapy, Issue 63/9, 2019, ISSN 0066-4804
Publisher:
American Society for Microbiology
DOI:
10.1128/aac.00965-19
Author(s):
Mattia Palmieri, Marco Maria D’Andrea, Andreu Coello Pelegrin, Nadine Perrot, Caroline Mirande, Bernadette Blanc, Nicholas Legakis, Herman Goossens, Gian Maria Rossolini, Alex van Belkum
Published in:
Frontiers in Microbiology, Issue 11, 2020, ISSN 1664-302X
Publisher:
Frontiers Media
DOI:
10.3389/fmicb.2020.00668
Author(s):
Magali Jaillard, Mattia Palmieri, Alex van Belkum, Pierre Mahé
Published in:
GigaScience, Issue 9/10, 2020, ISSN 2047-217X
Publisher:
GigaScience
DOI:
10.1093/gigascience/giaa110
Author(s):
Bernd Peeters, Saba Safdar, Devin Daems, Peter Goos, Dragana Spasic, Jeroen Lammertyn
Published in:
Analytical Chemistry, Issue 92/15, 2020, Page(s) 10783-10791, ISSN 0003-2700
Publisher:
American Chemical Society
DOI:
10.1021/acs.analchem.0c02241
Author(s):
Alex van Belkum, Olivier Rochas
Published in:
Frontiers in Microbiology, Issue 9, 2018, ISSN 1664-302X
Publisher:
Frontiers Media
DOI:
10.3389/fmicb.2018.01437
Author(s):
Sara Horta, Jia-Huan Qu, Charlotte Dekimpe, Quintijn Bonnez, Aline Vandenbulcke, Edwige Tellier, Gilles Kaplanski, Filip Delport, Nick Geukens, Jeroen Lammertyn, Karen Vanhoorelbeke
Published in:
Analytical Chemistry, Issue 92/20, 2020, Page(s) 13880-13887, ISSN 0003-2700
Publisher:
American Chemical Society
DOI:
10.1021/acs.analchem.0c02586
Author(s):
Alex van Belkum, Andreu Coello Pelegrin, Rucha Datar, Manisha Goyal, Mattia Palmieri, Caroline Mirande, Valérie Chalansonnet, Sylvain Orenga
Published in:
Medical Microbiology and Immunology, Issue 209/3, 2020, Page(s) 217-223, ISSN 0300-8584
Publisher:
Springer Verlag
DOI:
10.1007/s00430-019-00643-4
Author(s):
Weijin Guo†, Jonas Hansson†, and Wouter van der Wijngaart*
Published in:
Langmuir, Issue 2016, 32 (48), 2016, Page(s) pp 12650–12655, ISSN 0743-7463
Publisher:
American Chemical Society
Author(s):
Ferran Pujol-Vila, Jiri Dietvorst, Laura Gall-Mas, María Díaz-González, Núria Vigués, Jordi Mas, Xavier Muñoz-Berbel
Published in:
Journal of Colloid and Interface Science, Issue 511, 2018, Page(s) 251-258, ISSN 0021-9797
Publisher:
Academic Press
DOI:
10.1016/j.jcis.2017.09.004
Author(s):
Sibel Ciftci, Felix Neumann, Samir Abdurahman, K. Sofia Appelberg, Ali Mirazimi, Mats Nilsson, Narayanan Madaboosi
Published in:
The Journal of Molecular Diagnostics, Issue 22/2, 2020, Page(s) 272-283, ISSN 1525-1578
Publisher:
American Society for Investigative Pathology
DOI:
10.1016/j.jmoldx.2019.10.014
Author(s):
Felix Neumann, Iván Hernández-Neuta, Malin Grabbe, Narayanan Madaboosi, Jan Albert, Mats Nilsson
Published in:
Clinical Chemistry, Issue 64/12, 2018, Page(s) 1704-1712, ISSN 0009-9147
Publisher:
American Association for Clinical Chemistry, Inc.
DOI:
10.1373/clinchem.2018.292979
Author(s):
Ruben R.G. Soares, Felix Neumann, Catarina R.F. Caneira, Narayanan Madaboosi, Sibel Ciftci, Iván Hernández-Neuta, Inês F. Pinto, Denis R. Santos, Virginia Chu, Aman Russom, João P. Conde, Mats Nilsson
Published in:
Biosensors and Bioelectronics, Issue 128, 2019, Page(s) 68-75, ISSN 0956-5663
Publisher:
Pergamon Press Ltd.
DOI:
10.1016/j.bios.2018.12.004
Author(s):
Charlotte Dekimpe, Elien Roose, Claudia Tersteeg, Bérangère S. Joly, Aurélie Dewaele, Sara Horta, Inge Pareyn, Aline Vandenbulcke, Hans Deckmyn, Hendrik B. Feys, Edwige Tellier, Gilles Kaplanski, Marie Scully, Paul Coppo, Simon F. De Meyer, Agnès Veyradier, Karen Vanhoorelbeke
Published in:
Journal of Thrombosis and Haemostasis, 2020, ISSN 1538-7933
Publisher:
Blackwell Publishing Inc.
DOI:
10.1111/jth.14747
Author(s):
Sibel Ciftci, Felix Neumann, Iván Hernández-Neuta, Mikhayil Hakhverdyan, Ádám Bálint, David Herthnek, Narayanan Madaboosi, Mats Nilsson
Published in:
Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
Publisher:
Nature Publishing Group
DOI:
10.1038/s41598-019-39854-3
Author(s):
Yulia Rosa Saharman, Andreu Coello Pelegrin, Anis Karuniawati, Rudyanto Sedono, Dita Aditianingsih, Wil H.F. Goessens, Corné H.W. Klaassen, Alex van Belkum, Caroline Mirande, Henri A. Verbrugh, Juliëtte A. Severin
Published in:
International Journal of Antimicrobial Agents, Issue 54/5, 2019, Page(s) 655-660, ISSN 0924-8579
Publisher:
Elsevier BV
DOI:
10.1016/j.ijantimicag.2019.08.003
Author(s):
Nicolas Kieffer, Guilhem Royer, Jean-Winoc Decousser, Anne-Sophie Bourrel, Mattia Palmieri, Jose-Manuel Ortiz De La Rosa, Hervé Jacquier, Erick Denamur, Patrice Nordmann, Laurent Poirel
Published in:
Antimicrobial Agents and Chemotherapy, Issue 63/9, 2019, ISSN 0066-4804
Publisher:
American Society for Microbiology
DOI:
10.1128/aac.00965-19
Author(s):
Manisha Goyal, Fabien Javerliat, Mattia Palmieri, Caroline Mirande, Willem van Wamel, Mehri Tavakol, Nelianne J. Verkaik, Alex van Belkum
Published in:
Frontiers in Microbiology, Issue 10, 2019, ISSN 1664-302X
Publisher:
Frontiers Media
DOI:
10.3389/fmicb.2019.01525
Author(s):
Laurent Poirel, Mattia Palmieri, Michael Brilhante, Amandine Masseron, Vincent Perreten, Patrice Nordmann
Published in:
Antimicrobial Agents and Chemotherapy, Issue 64/2, 2020, ISSN 0066-4804
Publisher:
American Society for Microbiology
DOI:
10.1128/aac.01700-19
Author(s):
Alex van Belkum, Andreu Coello Pelegrin, Rucha Datar, Manisha Goyal, Mattia Palmieri, Caroline Mirande, Valérie Chalansonnet, Sylvain Orenga
Published in:
Medical Microbiology and Immunology, 2019, ISSN 0300-8584
Publisher:
Springer Verlag
DOI:
10.1007/s00430-019-00643-4
Author(s):
Saba Safdar, Karen Ven, Julie van Lent, Benjamin Pavie, Iene Rutten, Annelies Dillen, Sebastian Munck, Jeroen Lammertyn, Dragana Spasic
Published in:
Biosensors and Bioelectronics, Issue 152, 2020, Page(s) 112017, ISSN 0956-5663
Publisher:
Pergamon Press Ltd.
DOI:
10.1016/j.bios.2020.112017
Author(s):
Jiri Dietvorst, Jeroen Goyvaerts, Tobias Nils Ackermann, Erica Alvarez, Xavier Muñoz-Berbel, Andreu Llobera
Published in:
Lab on a Chip, Issue 19/12, 2019, Page(s) 2081-2088, ISSN 1473-0197
Publisher:
Royal Society of Chemistry
DOI:
10.1039/c9lc00143c
Author(s):
Felix Neumann, Narayanan Madaboosi, Iván Hernández-Neuta, Jeanpierre Salas, Annika Ahlford, Vasile Mecea, Mats Nilsson
Published in:
Sensors and Actuators B: Chemical, Issue 273, 2018, Page(s) 742-750, ISSN 0925-4005
Publisher:
Elsevier BV
DOI:
10.1016/j.snb.2018.06.025
Author(s):
Aida Montserrat Pagès, Saba Safdar, Karen Ven, Jeroen Lammertyn, Dragana Spasic
Published in:
Analytical and Bioanalytical Chemistry, Issue 413/20, 2021, Page(s) 4925-4937, ISSN 1618-2642
Publisher:
Springer Verlag
DOI:
10.1007/s00216-021-03458-6
Author(s):
Narayanan Madaboosi, Felix Neumann, Iván Hernández-Neuta, Jeanpierre Salas, Vasile Mecea, Mats Nilsson
Published in:
Proceedings, Issue 1/4, 2017, Page(s) 509, ISSN 2504-3900
Publisher:
Proceedings
DOI:
10.3390/proceedings1040509
Author(s):
Michael Biggel, Stefan Heytens, Katrien Latour, Robin Bruyndonckx, Herman Goossens, Pieter Moons
Published in:
BMC Geriatrics, Issue 19/1, 2019, ISSN 1471-2318
Publisher:
BioMed Central
DOI:
10.1186/s12877-019-1181-4
Author(s):
Karen Ven, Saba Safdar, Annelies Dillen, Jeroen Lammertyn, Dragana Spasic
Published in:
Analytical and Bioanalytical Chemistry, Issue 411/1, 2019, Page(s) 205-215, ISSN 1618-2642
Publisher:
Springer Verlag
DOI:
10.1007/s00216-018-1429-4
Author(s):
I. Hernández-Neuta, F. Neumann, J. Brightmeyer, T. Ba Tis, N. Madaboosi, Q. Wei, A. Ozcan, M. Nilsson
Published in:
Journal of Internal Medicine, Issue 285/1, 2019, Page(s) 19-39, ISSN 0954-6820
Publisher:
Blackwell Publishing Inc.
DOI:
10.1111/joim.12820
Author(s):
Sibel Ciftci, Rocío Cánovas, Felix Neumann, Thomas Paulraj, Mats Nilsson, Gaston A. Crespo, Narayanan Madaboosi
Published in:
Biosensors and Bioelectronics, Issue 151, 2020, Page(s) 112002, ISSN 0956-5663
Publisher:
Pergamon Press Ltd.
DOI:
10.1016/j.bios.2019.112002
Author(s):
Reza Zandi Shafagh, Alexander Vastesson, Weijin Guo, Wouter van der Wijngaart, Tommy Haraldsson
Published in:
ACS Nano, Issue 12/10, 2018, Page(s) 9940-9946, ISSN 1936-0851
Publisher:
American Chemical Society
DOI:
10.1021/acsnano.8b03709
Author(s):
Andreu Coello Pelegrin, Yulia Rosa Saharman, Aurélien Griffon, Mattia Palmieri, Caroline Mirande, Anis Karuniawati, Rudyanto Sedono, Dita Aditianingsih, Wil H. F. Goessens, Alex van Belkum, Henri A. Verbrugh, Corné H. W. Klaassen, Juliëtte A. Severin
Published in:
mBio, Issue 10/6, 2019, ISSN 2150-7511
Publisher:
mbio
DOI:
10.1128/MBIO.02384-19
Author(s):
Mattia Palmieri, Stephane Schicklin, Andreu Coello Pelegrin, Sonia Chatellier, Christine Franceschi, Caroline Mirande, Yeon-Joon Park, Alex van Belkum
Published in:
Annals of Laboratory Medicine, Issue 38/4, 2018, Page(s) 367, ISSN 2234-3806
Publisher:
Seoul National University
DOI:
10.3343/alm.2018.38.4.367
Author(s):
Mattia Palmieri, Marco Maria D’Andrea, Andreu Coello Pelegrin, Caroline Mirande, Snezana Brkic, Ivana Cirkovic, Herman Goossens, Gian Maria Rossolini, Alex van Belkum
Published in:
Frontiers in Microbiology, Issue 11, 2020, ISSN 1664-302X
Publisher:
Frontiers Media
DOI:
10.3389/fmicb.2020.00294
Author(s):
Emre Iseri, Michael Biggel, Herman Goossens, Pieter Moons, Wouter van der Wijngaart
Published in:
Lab on a Chip, Issue 20/23, 2020, Page(s) 4349-4356, ISSN 1473-0197
Publisher:
Royal Society of Chemistry
DOI:
10.1039/d0lc00793e
Author(s):
Laurent Poirel, Mattia Palmieri, Michael Brilhante, Amandine Masseron, Vincent Perreten, Patrice Nordmann
Published in:
Antimicrobial Agents and Chemotherapy, Issue 64/2, 2020, ISSN 0066-4804
Publisher:
American Society for Microbiology
DOI:
10.1128/aac.01700-19
Author(s):
Yang Liu, Thomas Lehnert, Martin A. M. Gijs
Published in:
Lab on a Chip, Issue 20/17, 2020, Page(s) 3144-3157, ISSN 1473-0197
Publisher:
Royal Society of Chemistry
DOI:
10.1039/d0lc00579g
Author(s):
Jiri Dietvorst, Lluïsa Vilaplana, Naroa Uria, Maria-Pilar Marco, Xavier Muñoz-Berbel
Published in:
TrAC Trends in Analytical Chemistry, Issue 127, 2020, Page(s) 115891, ISSN 0165-9936
Publisher:
Elsevier BV
DOI:
10.1016/j.trac.2020.115891
Author(s):
Ronan M. Doyle, Denise M. O'Sullivan, Sean D. Aller, Sebastian Bruchmann, Taane Clark, Andreu Coello Pelegrin, Martin Cormican, Ernest Diez Benavente, Matthew J. Ellington, Elaine McGrath, Yair Motro, Thi Phuong Thuy Nguyen, Jody Phelan, Liam P. Shaw, Richard A. Stabler, Alex van Belkum, Lucy van Dorp, Neil Woodford, Jacob Moran-Gilad, Jim F. Huggett, Kathryn A. Harris
Published in:
Microbial Genomics, Issue 6/2, 2020, ISSN 2057-5858
Publisher:
microbial genomics
DOI:
10.1099/mgen.0.000335
Author(s):
I. Hernández‐Neuta, F. Neumann, J. Brightmeyer, T. Ba Tis, N. Madaboosi, Q. Wei, A. Ozcan, M. Nilsson
Published in:
Journal of Internal Medicine, Issue 285/1, 2019, Page(s) 19-39, ISSN 0954-6820
Publisher:
Blackwell Publishing Inc.
DOI:
10.1111/joim.12820
Author(s):
Weijin Guo, Jonas Hansson, Wouter van der Wijngaart
Published in:
Analytical Chemistry, Issue 92/9, 2020, Page(s) 6194-6199, ISSN 0003-2700
Publisher:
American Chemical Society
DOI:
10.1021/acs.analchem.0c01474
Author(s):
Guo, Maoxiang; Hernández-Neuta, Iván; Madaboosi, Narayanan; Nilsson, Mats; van der Wijngaart, Wouter
Published in:
Issue 2, 2017
Publisher:
Academic Publishing International
Author(s):
Narayanan Madaboosi, Felix Neumann, Iván Hernández-Neuta, Jeanpierre Salas, Vasile Mecea and Mats Nilsson
Published in:
Proceedings of eurosensors 2017, Issue 1(4), 2017, Page(s) 509
Publisher:
Proceedings of eurosensors 2017
Author(s):
Tobias N. Ackermann; Jiri Dietvorst; Ana Sanchis; Juan P. Salvador; Xavier Munoz-Berbel; Erica Alvarez-Conde; Daniel Kopp; Hans Zappe; M.- Pilar Marco; Andreu Llobera;
Published in:
Proceedings Volume 10013, SPIE BioPhotonics, 2016
Publisher:
Spie
Author(s):
Guo, Weijin, Hansson, Jonas, van der Wijngaart, Wouter
Published in:
Proceeding of 2017 IEEE 30th International Conference on Micro Electro Mechanical Systems (MEMS), IEEE, 2017, 2017
Publisher:
IEEE, 2017
Author(s):
Guo, W., Hansson, J., van der Wijngaart, W.
Published in:
Proceedings of The 20th International Conference on Miniaturized Systems for Chemistry and Life Sciences, Issue MicroTAS 2016, 2016, Page(s) pp. 13-14
Publisher:
MicroTAS
Author(s):
Weijin Guo, Linnea Gustafsson, Ronnie Jansson, My Hedhammar, Wouter van der Wijngaart
Published in:
2018 IEEE Micro Electro Mechanical Systems (MEMS), 2018, Page(s) 83-85, ISBN 978-1-5386-4782-0
Publisher:
IEEE
DOI:
10.1109/memsys.2018.8346488
Author(s):
Emre Iseri, Kerem Kaya, Giacomo di Dio, Hiroki Yasuga, Norihisa Miki, Wouter van der Wijngaart
Published in:
2019 IEEE 32nd International Conference on Micro Electro Mechanical Systems (MEMS), 2019, Page(s) 290-291, ISBN 978-1-7281-1610-5
Publisher:
IEEE
DOI:
10.1109/memsys.2019.8870801
Author(s):
Hiroki Yasuga, Weijin Guo, Jonas Hansson, Tommy Haraldsson, Norihisa Miki, Wouter van der Wijngaart
Published in:
2018 IEEE Micro Electro Mechanical Systems (MEMS), 2018, Page(s) 269-271, ISBN 978-1-5386-4782-0
Publisher:
IEEE
DOI:
10.1109/memsys.2018.8346536
Author(s):
Guo, Weijin
Hansson, Jonas
van der Wijngaart, Wouter
Published in:
Proceedings of The 23rd International Conference on Miniaturized Systems for Chemistry and Life Sciences, 2019, p. 1056-1057, 2019
Publisher:
Proceedings of The 23rd International Conference on Miniaturized Systems for Chemistry and Life Sciences,
Author(s):
Emre Iseri, Seref Akay, Wouter van der Wijngaart
Published in:
2018 IEEE Micro Electro Mechanical Systems (MEMS), 2018, Page(s) 301-303, ISBN 978-1-5386-4782-0
Publisher:
IEEE
DOI:
10.1109/memsys.2018.8346545
Author(s):
Hiroki Yasuga, Toshihisa Osaki, Koki Kamiya, Emre Iseri, Wouter van der Wijngaart, Shoji Takeuchi, Norihisa Miki
Published in:
2019 IEEE 32nd International Conference on Micro Electro Mechanical Systems (MEMS), 2019, Page(s) 388-389, ISBN 978-1-7281-1610-5
Publisher:
IEEE
DOI:
10.1109/memsys.2019.8870863
Author(s):
Jolien Breukers, Caroline Struyfs, Sara Horta, Karin Thevissen, Karen Vanhoorelbeke, Bruno P. A. Cammue, Jeroen Lammertyn
Published in:
Handbook of Single Cell Technologies, 2019, Page(s) 1-32, ISBN 978-981-10-4857-9
Publisher:
Springer Singapore
DOI:
10.1007/978-981-10-4857-9_21-1
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