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CEREALPATH - Training in innovative and integrated control of cereal diseases

Deliverables

Identification of new endophytes that show potential for disease control
Workshop 3 - Biologicals and bioactives for disease control

Training in knowledge of different biological and other alternative agents that can control diseases (month 17); Knowledge on the cutting edge literature on biological control and bioactives in relation to cereal pathology (month 17 and afterwards through the online journal club); Improved network with experts in the field (month 17).

Progress report submitted to REA

Progress report submitted to REA Other internal network reports: inception report (M4), annual progress report (M12,M24,36), and final report (M48)

Publications

Editorial: Plant Disease Management in the Post-genomic Era: From Functional Genomics to Genome Editing.

Author(s): Sabrina Sarrocco; Alfredo Herrera-Estrella; David B. Collinge
Published in: Sarrocco , S , Herrera-estrella , A & Collinge , D B 2020 , ' Plant Disease Management in the Post-genomic Era : From Functional Genomics to Genome Editing ' , Frontiers in Microbiology , vol. 11 , 107 , pp. 1-2 . https://doi.org/10.3389/fmicb.2020.00107, Issue 18, 2020, Page(s) 107, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fmicb.2020.00107

Cross-kingdom RNA trafficking and environmental RNAi — nature's blueprint for modern crop protection strategies

Author(s): Cai, Qiang; He, Baoye; Kogel, Karl-Heinz; Jin, Hailing
Published in: Current Opinion in Microbiology, Issue 7, 2018, ISSN 1369-5274
Publisher: Elsevier BV
DOI: 10.1016/j.mib.2018.02.003

Identification of two endophytic fungi that control Septoria tritici blotch in the field, using a structured screening approach

Author(s): Meike A.C. Latz, Birgit Jensen, David B. Collinge, Hans Jørgen Lyngs Jørgensen
Published in: Biological Control, Issue 141, 2020, Page(s) 104128, ISSN 1049-9644
Publisher: Academic Press
DOI: 10.1016/j.biocontrol.2019.104128

Fusarium Head Blight Modifies Fungal Endophytic Communities During Infection of Wheat Spikes

Author(s): Edward C. Rojas, Rumakanta Sapkota, Birgit Jensen, Hans J. L. Jørgensen, Tina Henriksson, Lise Nistrup Jørgensen, Mogens Nicolaisen, David B. Collinge
Published in: Microbial Ecology, 2019, ISSN 0095-3628
Publisher: Springer Verlag
DOI: 10.1007/s00248-019-01426-3

Further Elucidation of the Argonaute and Dicer Protein Families in the Model Grass Species Brachypodium distachyon

Author(s): Ena Šečić, Silvia Zanini, Karl-Heinz Kogel
Published in: Frontiers in Plant Science, Issue 10, 2019, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2019.01332

A Bioinformatics Pipeline for the Analysis and Target Prediction of RNA Effectors in Bidirectional Communication During Plant–Microbe Interactions

Author(s): Silvia Zanini, Ena Šečić, Lukas Jelonek, Karl-Heinz Kogel
Published in: Frontiers in Plant Science, Issue 9, 2018, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2018.01212

Association mapping of wheat Fusarium head blight resistance-related regions using a candidate-gene approach and their verification in a biparental population

Author(s): Karolina Maria Słomińska-Durdasiak, Sonja Kollers, Viktor Korzun, Daniela Nowara, Patrick Schweizer, Armin Djamei, Jochen Christoph Reif
Published in: Theoretical and Applied Genetics, 2019, ISSN 0040-5752
Publisher: Springer Verlag
DOI: 10.1007/s00122-019-03463-5

Endophytic fungi as biocontrol agents: elucidating mechanisms in disease suppression

Author(s): Meike A.C. Latz, Birgit Jensen, David B. Collinge, Hans J.L. Jørgensen
Published in: Plant Ecology & Diversity, Issue 11/5-6, 2018, Page(s) 555-567, ISSN 1755-0874
Publisher: Taylor & Francis
DOI: 10.1080/17550874.2018.1534146

Hidden Fungi: Combining Culture-Dependent and -Independent DNA Barcoding Reveals Inter-Plant Variation in Species Richness of Endophytic Root Fungi in Elymus repens

Author(s): Anna K. Høyer; Trevor R. Hodkinson
Published in: Issue 6, Issue 4, 2021, ISSN 2309-608X
Publisher: MDPI
DOI: 10.3390/jof7060466

Characterization of the volatilome of Lysobacter capsici AZ78 and its bioactivity against soilborne plant pathogenic fungi and oomycetes

Author(s): Vlassi, A.; Puopolo, G.; Perazzolli, M.; Nesler, A.; Parich, A.; Schuhmacher, R.
Published in: BOKU University PhD conference IFA-TULLN, Issue 17, 2018
Publisher: BOKU University

Zurich-Basel Plant Science Center: PSC Summer Schools 2014 and 2016, Agriculture in transformation – Concepts for agriculture production systems that are socially fair, environmentally safe and economically viable

Author(s): Paschke; Melanie (Ed) Kangara; N.; Marchal; C.; Ndougonna C.; and Słomińska-Durdasiak K Kolodziej; M.C.; Karki; S.J.; Malla K.B.; and Zanini; S. Soto; M.; Santos; M.; Reyhanloo; T.; and Drakopoulos; D. Hoeyer; A.J.; Ramoneda; J.; Merz; Q.; and Welker; L Deshaies; M; Gimeno; A.; Rahn; E.; and Rojas; E.C.
Published in: Agriculture in transformation – Concepts for agriculture production systems that are socially fair, environmentally safe and economically viable, Issue 4, 2017
Publisher: ETH Library

Zurich-Basel Plant Science Center: PSC Summer Schools 2014 and 2016, Agriculture in transformation – Concepts for agriculture production systems that are socially fair, environmentally safe and economically viable

Author(s): Paschke, Melanie (Ed) Kangara, N., Marchal, C., Ndougonna C., and Słomińska-Durdasiak K Kolodziej, M.C., Karki, S.J., Malla K.B., and Zanini, S. Soto, M., Santos, M., Reyhanloo, T., and Drakopoulos, D. Hoeyer, A.J., Ramoneda, J., Merz, Q., and Welker, L Deshaies, M, Gimeno, A., Rahn, E., and Rojas, E.C.
Published in: 2017
Publisher: Idea Verlag
DOI: 10.3929/ethz-b-000218321

Fusarium diseases: biology and management perspectives

Author(s): Edward C. Rojas, Hans J. L. Jørgensen, Birgit Jensen, David B. Collinge
Published in: Integrated disease management of wheat and barley, 2018, Page(s) 23-45, ISBN 9781-786762160
Publisher: Burleigh Dodds Science Publishing
DOI: 10.19103/as.2018.0039.02

Searching for Novel Fungal Biological Control Agents for Plant Disease Control Among Endophytes

Author(s): David B. Collinge, Hans J. L. Jørgensen, Meike A. C. Latz, Andrea Manzotti, Fani Ntana, Edward C. Rojas, Birgit Jensen
Published in: Endophytes for a Growing World, 2019, Page(s) 25-51, ISBN 9781-108607667
Publisher: Cambridge University Press
DOI: 10.1017/9781108607667.003

Emerging Methods for Biological Control of Barley Diseases Including the Role of Endophytes

Author(s): Anna K. Høyer, Hans J. L. Jørgensen, Birgit Jensen, Brian R. Murphy, Trevor R. Hodkinson
Published in: Endophytes for a Growing World, 2019, Page(s) 93-119, ISBN 9781-108607667
Publisher: Cambridge University Press
DOI: 10.1017/9781108607667.006

Discovery of interaction-related sRNAs and their targets in the Brachypodium distachyon and Magnaporthe oryzae pathosystem

Author(s): Silvia Zanini, Ena Šečić, Tobias Busche, Jörn Kalinowski, Karl-Heinz Kogel
Published in: 2019
Publisher: bioRxiv, Cold Spring Harbor Laboratory,
DOI: 10.1101/631945

K-PIE: using K-means algorithm for Percentage Infection symptoms Estimation

Author(s): Vanessa Bueno-Sancho; Pilar Corredor-Moreno; Ngonidzashe Kangara; Diane G.O. Saunders
Published in: 2019
Publisher: Zenodo
DOI: 10.5281/zenodo.3584148

Isolation and characterisation of novel fungal root endophytes from Elymus repens (Poaceae) for resistance to Fusarium, Gaeummanomyces and Pyrenophora

Author(s): HØYER, ANNA KAJA
Published in: 2019
Publisher: Trinity College Dublin

Identification and characterisation of effector proteins from Zymoseptoria tritici

Author(s): Sujit Jung Karki
Published in: 2019
Publisher: University College Dublin

Characterisation of genes involved in the wheat response to Fusarium head blight disease

Author(s): Malla, Keshav Bahadur
Published in: 2019
Publisher: University College Dublin

Endophytic fungi in wheat : plant-microbe interactions from molecular to community scale

Author(s): Meike Latz
Published in: 2019
Publisher: University of Copenhagen

Fungal Endophytes as Novel Biocontrol Agents of Fusarium Head Blight in Wheat

Author(s): ROJAS, EDWARD C,
Published in: 2019
Publisher: University of Copenhagen

Investigating the potential of biologically derived agents to reduce the effects of stress in wheat

Author(s): Myriam Deshaies
Published in: 2019
Publisher: University College Dublin

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