Transmission of the human microbiome and its impact on health

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Drafting of Data Management Plan

Publicaciones

MetaPhlAn 4 profiling of unknown species-level genome bins improves the characterization of diet-associated microbiome changes in mice

Autores: Paolo Manghi, Aitor Blanco-Míguez, et al
Publicado en: Cell Reports, 2023, ISSN 2211-1247
Editor: Amsterdam Elsevier
DOI: 10.1016/j.celrep.2023.112464

The person-to-person transmission landscape of the gut and oral microbiomes

Autores: Mireia Valles-Colomer, Aitor Blanco-Míguez, Paolo Manghi, Francesco Asnicar, Leonard Dubois, Davide Golzato, Federica Armanini, Fabio Cumbo, Kun D. Huang, Serena Manara, Giulia Masetti, Federica Pinto, Elisa Piperni, Michal Punčochář, Liviana Ricci, Moren
Publicado en: Nature, 2023, ISSN 1476-4687
Editor: Springer Nature
DOI: 10.1038/s41586-022-05620-1

Extension of the Segatella copri complex to 13 species with distinct large extrachromosomal elements and associations with host conditions

Autores: Aitor Blanco-Míguez, Eric J.C. Gálvez, Edoardo Pasolli, Francesca De Filippis, Lena Amend, Kun D. Huang, Paolo Manghi, Till-Robin Lesker, Thomas Riedel, Linda Cova, Michal Punčochář, Andrew Maltez Thomas, Mireia Valles-Colomer, Isabel Schober, Thomas C.A. Hitch, Thomas Clavel, Sarah E. Berry, Richard Davies, Jonathan Wolf, Tim D. Spector, Jörg Overmann, Adrian Tett, Danilo Ercolini, Nicola Segata, Till Strowig
Publicado en: Cell Host & Microbe, Edición 31, 2024, ISSN 1931-3128
Editor: Elsevier BV
DOI: 10.1016/j.chom.2023.09.013

Draft genome sequence of a representative strain of the Catenibacterium genus isolated from human feces

Autores: Liviana Ricci, Marta Selma-Royo, Davide Golzato, Amir Nabinejad, Charlotte Servais, Federica Armanini, Francesco Asnicar, Federica Pinto, Sabrina Tamburini, Nicola Segata
Publicado en: Microbiology Resource Announcements, 2023, ISSN 2576-098X
Editor: American Society for Microbiology
DOI: 10.1128/MRA.00329-23

Gut OncoMicrobiome Signatures (GOMS) as next-generation biomarkers for cancer immunotherapy

Autores: Andrew Maltez Thomas, Marine Fidelle, Bertrand Routy, Guido Kroemer, Jennifer A. Wargo, Nicola Segata & Laurence Zitvogel
Publicado en: Nature Reviews Clinical Oncology, 2023, ISSN 1759-4782
Editor: Nature Portfolio
DOI: 10.1038/s41571-023-00785-8

Population-level impacts of antibiotic usage on the human gut microbiome

Autores: Kihyun Lee, Sebastien Raguideau, Kimmo Sirén, Francesco Asnicar, Fabio Cumbo, Falk Hildebrand, Nicola Segata, Chang-Jun Cha, Christopher Quince
Publicado en: Nature Communications, Edición 14, 2023, ISSN 2041-1723
Editor: Springer Science and Business Media LLC
DOI: 10.1038/s41467-023-36633-7

Draft genome sequences of multiple bacterial strains isolated from human feces

Autores: Marta Selma-Royo, Liviana Ricci, Davide Golzato, Charlotte Servais, Amir Nabinejad, Federica Armanini, Francesco Asnicar, Federica Pinto, Sabrina Tamburini, Nicola Segata
Publicado en: Microbiology Resource Announcements, Edición 13, 2024, ISSN 2576-098X
Editor: American Society for Microbiology
DOI: 10.1128/mra.00307-24

Favorable subgingival plaque microbiome shifts are associated with clinical treatment for peri-implant diseases

Autores: Davide Bazzani, Vitor Heidrich, Paolo Manghi, Aitor Blanco-Miguez, Francesco Asnicar, Federica Armanini, Sara Cavaliere, Alberto Bertelle, Federico Dell’Acqua, Ester Dellasega, Romina Waldner, Daniela Vicentini, Mattia Bolzan, Cristiano Tomasi, Nicola Seg
Publicado en: npj Biofilms and Microbiomes, Edición 10, 2024, ISSN 2055-5008
Editor: Springer Nature
DOI: 10.1038/s41522-024-00482-z

Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies

Autores: Katherine M. Kennedy, Marcus C. de Goffau, Maria Elisa Perez-Muñoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D. Bushman, Joel Dore, Willem M. de Vos, Ashlee M. Earl, Jonathan A. Eisen, Michal A. Elovitz, Stephanie C. Ganal-Vonarburg, Michael G. Gänzle, Wendy S. Garrett, Lindsay J. Hall, Mathias W. Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J. Macpherson, Ruth C. Massey, Alice Carolyn McHardy, Omry Koren, Trevor D. Lawley, Ruth E. Ley, Liam O’Mahony, Paul W. O’Toole, Eric G. Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M. Sloboda, Gordon C. S. Smith, Harry Sokol, Tim D. Spector, Michael G. Surette, Gerald W. Tannock, Alan W. Walker, Moran Yassour, Jens Walter
Publicado en: Nature, Edición 613, 2023, ISSN 0028-0836
Editor: Springer Science and Business Media LLC
DOI: 10.1038/s41586-022-05546-8

Automated identification of sequence-tailored Cas9 proteins using massive metagenomic data

Autores: Matteo Ciciani, Michele Demozzi, Eleonora Pedrazzoli, Elisabetta Visentin, Laura Pezzè, Lorenzo Federico Signorini, Aitor Blanco-Miguez, Moreno Zolfo, Francesco Asnicar, Antonio Casini, Anna Cereseto & Nicola Segata
Publicado en: Nature communications, 2022, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-022-34213-9

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

Autores: Blanco-Míguez, Aitor; Beghini, Francesco; Cumbo, Fabio; Mciver, Lauren J.; Thompson, Kelsey N.; Zolfo, Moreno; Manghi, Paolo; Dubois, Leonard; Huang, Kun D.; Thomas, Andrew Maltez; Nickols, William A.; Piccinno, Gianmarco; Piperni, Elisa; Punčochář, Micha
Publicado en: NATURE BIOTECHNOLOGY, Edición 41, 2023, ISSN 1087-0156
Editor: Nature Portfolio
DOI: 10.1038/s41587-023-01688-w

Draft Genome Sequence of Neopoerus faecalis gen. nov., sp. nov., an Oscillospiraceae Strain Isolated from Human Feces

Autores: Marta Selma-Royo https://orcid.org/0000-0002-4258-947X, Liviana Ricci https://orcid.org/0000-0001-9450-9235, Davide Golzato, Charlotte Servais, Federica Armanini, Francesco Asnicar, Federica Pinto, Nicola Segata
Publicado en: Microbiology Resource Announcements, 2023, ISSN 2576-098X
Editor: American Society for Microbiology
DOI: 10.1128/mra.00330-23

Intestinal Blastocystis is linked to healthier diets and more favorable cardiometabolic outcomes in 56,989 individuals from 32 countries

Autores: Elisa Piperni, Long H. Nguyen, Paolo Manghi, Hanseul Kim, Edoardo Pasolli, Sergio Andreu-Sánchez, Alberto Arrè, Kate M. Bermingham, Aitor Blanco-Míguez, Serena Manara, Mireia Valles-Colomer, Elco Bakker, Fabio Busonero, Richard Davies, Edoardo Fiorillo, Francesca Giordano, George Hadjigeorgiou, Emily R. Leeming, Monia Lobina, Marco Masala, Andrea Maschio, Lauren J. McIver, Mauro Pala, Maristella Pitzalis, Jonathan Wolf, Jingyuan Fu, Alexandra Zhernakova, Simone M. Cacciò, Francesco Cucca, Sarah E. Berry, Danilo Ercolini, Andrew T. Chan, Curtis Huttenhower, Tim D. Spector, Nicola Segata, Francesco Asnicar
Publicado en: Cell, Edición 187, 2024, ISSN 0092-8674
Editor: Elsevier BV
DOI: 10.1016/j.cell.2024.06.018

Neuroblastoma is associated with alterations in gut microbiome composition subsequent to maternal microbial seeding

Autores: Mireia Valles-Colomer, Paolo Manghi, Fabio Cumbo, Giulia Masetti, Federica Armanini, Francesco Asnicar, Aitor Blanco-Miguez, Federica Pinto, Michal Punčochář, Alberto Garaventa, Loredana Amoroso, Mirco Ponzoni, Maria Valeria Corrias, Nicola Segata
Publicado en: eBioMedicine, Edición 99, 2024, ISSN 2352-3964
Editor: Elsevier BV
DOI: 10.1016/j.ebiom.2023.104917

Cardiometabolic health, diet and the gut microbiome: a meta-omics perspective

Autores: Mireia Valles-Colomer, Cristina Menni, Sarah E. Berry, Ana M. Valdes, Tim D. Spector, Nicola Segata
Publicado en: Nature Medicine, Edición 29, 2023, ISSN 1078-8956
Editor: Springer Science and Business Media LLC
DOI: 10.1038/s41591-023-02260-4

CoCas9 is a compact nuclease from the human microbiome for efficient and precise genome editing

Autores: Eleonora Pedrazzoli, Michele Demozzi, Elisabetta Visentin, Matteo Ciciani, Ilaria Bonuzzi, Laura Pezzè, Lorenzo Lucchetta, Giulia Maule, Simone Amistadi, Federica Esposito, Mariangela Lupo, Annarita Miccio, Alberto Auricchio, Antonio Casini, Nicola Segata, Anna Cereseto
Publicado en: Nature Communications, Edición 15, 2024, ISSN 2041-1723
Editor: Springer Science and Business Media LLC
DOI: 10.1038/s41467-024-47800-9

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