Livrables
A compound testing cascade to accelerate decision making for drug discovery
A set of emergency/additional moleculesEmergency/Preparedness set of molecules for WP2
A toolbox with at least 8 assaysA toolbox with at least 8 assays able to measure binding and/or activity of the targeted proteins listed in task 2.6
Report on set up of the non-human primate model for SARS-CoV-2 infection and Report on set up of the non-human primate model for SARS-CoV-2 infection and diseaseeaseA report or publication that summarizes the development and clinical manifestations in the NHP model. The report also will summarize various primary and secondary endpoint that will facilitate evaluation of the test compounds.
A HTS assay for the RTC under a 384 well plate formatA HTS assay for the RTC under a 384-well plate format suitable to expedite focused screening of inhibitors (M6) and hit-to-lead efforts
Harmonisation of SOP between WP6 partners and with WP1-7SOP will be developed for prioritization of assets across various WPs, submitted and endorsed by the Steering Committee.
Report on reverse genetics systemReport should detail methods, development of mouse adapted virus based on reverse genetics and evaluation of the virus in a murine model establishing, primary and secondary endpoints in a non-trangenic strain.
1-CARE Small Molecule (SM) system impact modelSM system conceptual impact model
Report on setting up of rodent modelsA report to be written related to the rodent models to be used for testing of the 35 best candidates from WP1-4. 1. imported, characterised and bred K18 and humanised ACE-2 murine models in IVI and LUMC. 2. Characterised various Syrian Gold Hamster models in KU Leuven. Report should detail methods, controls used, primary and secondary endpoints and minimum results expected to show efficacy, as well as any processes to be used for PK/PD correlationsA report to be written related to the rodent models to be used for testing of the 35 best candidates from WP1-4. 1. imported, characterised and bred K18 and humanised ACE-2 murine models in IVI and LUMC. 2. Characterised various Syrian Gold Hamster models in KU Leuven] Report should detail methods, controls used, primary and secondary endpoints and minimum results expected to show efficacy, as well as any processes to be used for PK/PD correlations.
Report on suitability of mouse adapted SARS-CoV-2 virus for lethal humanised ACE-2 modelReport will detail methods and evaluation of the mouse model, dose used, primary and secondary endpoints and minimum results expected to show efficacy.
Drive efficient compound designs for phenotypic and target-based programs
Analysis of targets for druggabilityAI-platforms will enable selection of a portfolio of tractable targets. Data from multiple databases, will be used to build predictive models for developability criteria e.g., potency, selectivity, ADME-Tox using diverse algorithms e.g., Random Forrest. Design objectives will drive the AI-design platform
Data management plan mid-term version at Month 36
Initial Data Management PlanAn initial version of Data Management Plan will be prepared
Update at Month 12 on progress to deliver optimised lead
4-Portfolio reportUpdate at Month 24 on progress to deliver optimised lead
Duo reporter HTS assayValidated HTS assay based on a reporter virus and reporter cell line
1-Portfolio reportUpdate at Month 6 on progress to deliver optimised lead
3-Portfolio reportUpdate at Month 18 on progress to deliver optimised lead
Setup of the Clinical Trial Platform: Fast track process set upSetup of a Clinical Trial platform Fast track process is set up by M18
Setup of the Clinical Trial Platform: Implementation of representation concept completedSetup of a Clinical Trial Platform Implementation concept completed by M19
Publications
Auteurs:
Craig Fenwick, Priscilla Turelli, Yoan Duhoo, Kelvin Lau, Cécile Herate, Romain Marlin, Myriam Lamrayah, Jérémy Campos, Line Esteves-Leuenberger, Alex Farina, Charlène Raclot, Vanessa Genet, Flurin Fiscalini, Julien Cesborn, Laurent Perez, Nathalie Dereuddre-Bosquet, Vanessa Contreras, Kyllian Lheureux, Francis Relouzat, Rana Abdelnabi, Pieter Leyssen, Yves Lévy, Florence Pojer, Roger Le Gran
Publié dans:
Journal of infection, 2023, ISSN 0163-4453
Éditeur:
W. B. Saunders Co., Ltd.
DOI:
10.1016/j.jinf.2023.10.008
Auteurs:
Abdelnabi R, Foo CS, Kaptein SJF, Boudewijns R, Vangeel L, de Jonghe S, Jocmans D, Weynand B, Neyts J.
Publié dans:
Journal of virology, 2022, ISSN 0022-538x
Éditeur:
American Society for Microbiology
DOI:
10.1128/jvi.00758-22
Auteurs:
Obeid M, Suffiotti M, Pellaton C, et al.
Publié dans:
JAMA Oncol., Numéro 8/5, 2022, Page(s) e220446, ISSN 2374-2445
Éditeur:
American MEdical Association
DOI:
10.1001/jamaoncol.2022.0446
Auteurs:
Lonneke V. Nouwen, Martijn Breeuwsma, Esther A. Zaal, Chris H. A. van de Lest, Inge Buitendijk, Marleen Zwaagstra,Pascal Balić, Dmitri V. Filippov, Celia R. Berkers, Frank J. M. van Kuppeveld
Publié dans:
PloS Pathogens, 2024, ISSN 1553-7366
Éditeur:
Public Library of Science
DOI:
10.1371/journal.ppat.1012036
Auteurs:
Vito Thijssen, Daniel L Hurdiss , Oliver J Debski-Antoniak, Matthew A Spence, Charlotte Franck, Alexander Norman, Anupriya Aggarwal, Nadia J Mokiem, David A A van Dongen, Stein W Vermeir, Minglong Liu, Wentao Li, Marianthi Chatziandreou, Tim Donselaar, Wenjuan Du, Ieva Drulyte, Berend-Jan Bosch, Joost Snijder, Stuart G Turville, Richard J Payne, Colin J Jackson, Frank J M van Kuppeveld, Seino A K
Publié dans:
PNAS, 2023, ISSN 0027-8424
Éditeur:
National Academy of Sciences
DOI:
10.1073/pnas.2303292120
Auteurs:
Lalova-Spinks T, De Sutter E, VAlcke P, Kindt E, Lejeune S, Negrouk A, Verhenneman G, Derèze JJ, Storme R, Borry P, Meszaros J, Huys I.
Publié dans:
Frontiers in Medicine, 2022, ISSN 2296-858X
Éditeur:
Frontiers Media S.A
DOI:
10.3389/fmed.2022.995689
Auteurs:
LK Lie, A Synowiec, J Mazur, L Rabalski and K Pyrc
Publié dans:
Virology, 2023, ISSN 0042-6822
Éditeur:
Academic Press
DOI:
10.1016/j.virol.2023.109889
Auteurs:
Craig Fenwick, Antony Croxatto, Alix T. Coste, Florence Pojer, Cyril André, Céline Pellaton, Alex Farina, Jérémy Campos, David Hacker, Kelvin Lau, Berend-Jan Bosch, Semira Gonseth Nussle, Murielle Bochud, Valerie D’Acremont, Didier Trono, Gilbert Greub, Giuseppe Pantaleo
Publié dans:
Journal of Virology, Numéro 95/3, 2021, ISSN 0022-538X
Éditeur:
American Society for Microbiology
DOI:
10.1128/jvi.01828-20
Auteurs:
Craig Fenwick, Priscilla Turelli, Dongchun Ni, Laurent Perez, Kelvin Lau, Cécile Herate, Romain Marlin, Erica Lana, Céline Pellaton, Charlène Raclot, Line Esteves-Leuenberger, Jérémy Campos, Alex Farina, Flurin Fiscalini, Nathalie Dereuddre-Bosquet, Francis Relouzat, Rana Abdelnabi, Caroline S Foo, Johan Neyts, Pieter Leyssen, Yves Lévy, Florence Pojer, Henning Stahlberg, Roger LeGrand, Didi
Publié dans:
Nature Microbiology, Numéro 20585276, 2022, Page(s) 1376-1389, ISSN 2058-5276
Éditeur:
Nature Portfolio
DOI:
10.1038/s41564-022-01198-6
Auteurs:
Winston Chiu,Lore Verschueren,Christel Van den Eynde,Christophe Buyck,Sandra De Meyer,Dirk Jochmans,Denisa Bojkova,Sandra Ciesek,Jindrich Cinatl,Steven De Jonghe,Pieter Leyssen,Johan Neyts,Marnix Van Loock,Ellen Van Damme
Publié dans:
Journal of Medical Virology, Numéro 94/7, 2022, Page(s) 3101-3111, ISSN 1096-9071
Éditeur:
Wiley
DOI:
10.1002/jmv.27683
Auteurs:
Alex Matsuda, Jacek Plewka, Michał Rawski, André Mourão, Weronika Zajko, Till Siebenmorgen, Leanid Kresik, Kinga Lis, Alisha N Jones, Magdalena Pachota, Abdulkarim Karim, Kinga Hartman, Shivlee Nirwal, Ravi Sonani, Yuliya Chykunova, Igor Minia, Paweł Mak, Markus Landthaler, Marcin Nowotny, Grzegorz Dubin, Michael Sattler, Piotr Suder, Grzegorz M Popowicz, Krzysztof Pyrć, Anna Czarna
Publié dans:
Nucleic Acids Research, 2024, ISSN 0305-1048
Éditeur:
Oxford University Press
DOI:
10.1093/nar/gkae165
Auteurs:
Kinga Lis, Jacek Plewka, Filipe Menezes, Ewa Bielecka, Yuliya Chykunova, Katarzyna Pustelny, Stephan Niebling, Angelica Struve Garcia, Maria Garcia-Alai, Grzegorz M. Popowicz, Anna Czarna, Tomasz Kantyka, Krzysztof Pyrc
Publié dans:
International Journal of Biological Macromolecules, 2024, ISSN 0141-8130
Éditeur:
Elsevier BV
DOI:
10.1016/j.ijbiomac.2024.131392
Auteurs:
Wenjuan Du, Oliver Debski-Antoniak, Dubravka Drabek, Rien van Haperen, Melissa van Dortmondt, Joline van der Lee, Ieva Drulyte, Frank J. M. van Kuppeveld, Frank Grosveld, Daniel L. Hurdiss & Berend-Jan Bosch
Publié dans:
Nature Communications, 2024, ISSN 2041-1723
Éditeur:
Nature Publishing Group
DOI:
10.1038/s41467-024-49693-0
Auteurs:
Ashleigh Shannon, Véronique Fattorini, Bhawna Sama, Barbara Selisko, Mikael Feracci, Camille Falcou, Pierre Gauffre, Priscila El Kazzi, Adrien Delpal, Etienne Decroly, Karine Alvarez, Cécilia Eydoux, Jean-Claude Guillemot, Adel Moussa, Steven S. Good, Paolo La Colla, Kai Lin, Jean-Pierre Sommadossi, Yingxiao Zhu, Xiaodong Yan, Hui Shi, François Ferron & Bruno Canard
Publié dans:
Nature Communications, 2022, ISSN 2041-1723
Éditeur:
Nature Publishing Group
DOI:
10.1038/s41467-022-28113-1
Auteurs:
Tim S. Veth, Lonneke V. Nouwen, Marleen Zwaagstra, Heyrhyoung Lyoo, Kathryn A. Wierenga, Bart Westendorp, Maarten A.F.M. Altelaar, Celia Berkers, Frank J.M. van Kuppeveld, Albert J.R. Heck
Publié dans:
Molecular & Cellular Proteomics, 2024, ISSN 1535-9476
Éditeur:
American Society for Biochemistry and Molecular Biology Inc.
DOI:
10.1016/j.mcpro.2024.100757
Auteurs:
Craig Fenwick, Priscilla Turelli, Laurent Perez, Céline Pellaton, Line Esteves-Leuenberger, Alex Farina, Jérémy Campos, Erica Lana, Flurin Fiscalini, Charlène Raclot, Florence Pojer, Kelvin Lau, Davide Demurtas, Marc Descatoire, Victor S. Joo, Mathilde Foglierini, Alessandra Noto, Rana Abdelnabi, Caroline S. Foo, Laura Vangeel, Johan Neyts, Wenjuan Du, Berend-Jan Bosch, Geertruida Veldman, Pie
Publié dans:
Cell Reports, 2021, Page(s) 109814, ISSN 2211-1247
Éditeur:
Cell Press
DOI:
10.1016/j.celrep.2021.109814
Auteurs:
Doijen J, Temmerman K, Van der Eynde C, Diels A, Van der Broeck N, Van Gool M, Heo I, Jaensch S, Zwaagstra M, Diosa Toro M, Chiu W, de Jonghe S, Leyssen P, Bojkova D, Ciesek S, Cinati J, Verschueren L, Buyck C, Van Kupeveld F, Neyts J, Van Loock M, Van DAmme E.
Publié dans:
Microorganisms, 2023, ISSN 2076-2607
Éditeur:
MDPI
DOI:
10.3390/microorganisms11030717
Auteurs:
Winston Chiu, Joost Schepers, Thibault Francken, Laura Vangeel, Kayvan Abbasi, Dirk Jochmans, Steven De Jonghe, Hendrik Jan Thibaut, Volker Thiel, Johan Neyts, Manon Laporte, Pieter Leyssen
Publié dans:
Antiviral Research, 2023, ISSN 0166-3542
Éditeur:
Elsevier BV
DOI:
10.1016/j.antiviral.2022.105506
Auteurs:
Craig Fenwick, Priscilla Turelli, Céline Pellaton, Alex Farina, Jérémy Campos, Charlène Raclot, Florence Pojer, Valeria Cagno, Semira Gonseth Nusslé, Valerie D’Acremont, Jan Fehr, Milo Puhan, Giuseppe Pantaleo, Didier Trono
Publié dans:
Science Translational Medicine, Numéro 13/605, 2021, Page(s) eabi8452, ISSN 1946-6234
Éditeur:
American Association for the Advancement of Science
DOI:
10.1126/scitranslmed.abi8452
Auteurs:
De Sutter E, Lalova-Spinks T, Borry P, Valcke P, Kindt E, Negrouk A, Verhenneman G, Derèze JJ, Storme R, Huys I
Publié dans:
Frontiers in Medicine, 2022, ISSN 2296-858X
Éditeur:
Frontiers Media S.A
DOI:
10.3389/fmed.2022.995688
Auteurs:
Thibaut Naninck, Nidhal Kahlaoui, Julien Lemaitre, Pauline Maisonnasse, Antoine De Mori,
Quentin Pascal, Vanessa Contreras, Romain Marlin, Francis Relouzat, Benoıt Delache, Cecile Herate, Yoann Aldon, Marit van Gils, Nerea Zabaleta, Raphael Ho Tsong Fang, Nathalie Bosquet,
Rogier W. Sanders, Luk H. Vandenberghe, Catherine Chapon, and Roger Le Grand
Publié dans:
IScience, Numéro 25/4, 2022, Page(s) 104101, ISSN 2589-0042
Éditeur:
Cell Press, Elsevier
DOI:
10.1016/j.isci.2022.104101
Auteurs:
Séverin Coléon, Aurélie Wiedemann, Mathieu Surénaud, Christine Lacabaratz, Sophie Hue, Mélanie Prague, Minerva Cervantes-Gonzalez, Zhiqing Wang, Jerome Ellis, Amandine Sansoni, Camille Pierini, Quentin Bardin, Manon Fabregue, Sarah Sharkaoui, Philippe Hoest, Léa Dupaty, Florence Picard, Marwa El Hajj, Mireille Centlivre, Jade Ghosn, French COVID Cohort Study Group, Rodolphe Thiébaut, Sylvai
Publié dans:
EBioMedicine, Numéro 80, 2022, Page(s) 104062, ISSN 2352-3964
Éditeur:
Elsevier BV
DOI:
10.1016/j.ebiom.2022.104062
Auteurs:
Rana Abdelnabi,Ria Lassaunière,Piet Maes,Birgit Weynand and Johan Neyts
Publié dans:
Viruses, 2024, ISSN 1999-4915
Éditeur:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/v16010122
Auteurs:
Abdelnabi R, Maes P, de Jonghe S, Weynand B, Neyts J.
Publié dans:
Frontiers in Pharmacology, 2022, ISSN 1663-9812
Éditeur:
Frontiers Media S.A.
DOI:
10.3389/fphar.2022.1072202
Auteurs:
Bojkiva D, Reus P, Panosch L, Bechtel M, Rothenburger T, Kandler JD, Pfeiffer A, Wagner JUG, Shumliakivska M, Dimmeler S, Olmer R, Martin U, Vondran FWR, Toptan T, Rothweiler F, Zehner R, Rabenau HF, Osman KL, Pullan ST, Carroll MW, Cinatl Jr J.
Publié dans:
iScience, 2023, ISSN 2589-0042
Éditeur:
Cell Press Elsevier
DOI:
10.1016/j.isci.2023.105944
Auteurs:
Marcel Hausdorff, Adrien Delpal b, Sarah Barelier, Laura Nicollet, Bruno Canard, Franck Touret, Agathe Colmant, Bruno Coutard, Jean-Jacques Vasseur, Etienne Decroly, Françoise Debart
Publié dans:
European Journal of Medecinal Chemistry, 2023, ISSN 0223-5234
Éditeur:
Elsevier BV
DOI:
10.1016/j.ejmech.2023.115474
Auteurs:
Yves Lévy, Aurélie Wiedemann, Boris P. Hejblum, Mélany Durand, Cécile Lefebvre, Mathieu Surénaud, Christine Lacabaratz, Matthieu Perreau, Emile Foucat, Marie Déchenaud, Pascaline Tisserand, Fabiola Blengio, Benjamin Hivert, Marine Gauthier, Minerva Cervantes-Gonzalez, Delphine Bachelet, Cédric Laouénan, Lila Bouadma, Jean-François Timsit, Yazdan Yazdanpanah, Giuseppe Pantaleo, Hakim Hocin
Publié dans:
iScience, Numéro 24/7, 2021, Page(s) 102711, ISSN 2589-0042
Éditeur:
Cell Press Elsevier Inc.
DOI:
10.1016/j.isci.2021.102711
Auteurs:
Hakim Hocini, Aurélie Wiedemann, Fabiola Blengio, Cécile Lefebvre, Minerva Cervantes-Gonzalez, Emile Foucat, Pascaline Tisserand, Mathieu Surenaud, Séverin Coléon, Mélanie Prague, Lydia Guillaumat, Corinne Krief, Craig Fenwick, Cédric Laouénan, Lila Bouadma, Jade Ghosn, Giuseppe Pantaleo, Rodolphe Thiébaut; French COVID cohort study group; Yves Lévy
Publié dans:
J Clin Immunol, 2023, ISSN 0271-9142
Éditeur:
Kluwer Academic/Plenum Publishers
DOI:
10.1007/s10875-023-01459-x
Auteurs:
Vangeel L, Chiu W, De Jonghe S, Maes P, Slechten B, Raymenants J, Andre E, Leyssen P, Neyts J and Jochmans D.
Publié dans:
Antiviral Research, Numéro 198, 2022, Page(s) 105252, ISSN 0166-3542
Éditeur:
Elsevier BV
DOI:
10.1016/j.antiviral.2022.105252
Auteurs:
Yuao Zhu, Joe Binder, Irina Yurgelonis, Devendra K Rai, Sarah Lazarro, Chester Costales, Keith Kobylarz, Patricia McMonagle, Claire M Steppan, Lisa Aschenbrenner, Annaliesa S Anderson, Rhonda D Cardin
Publié dans:
Antiviral Research, 2022, ISSN 0166-3542
Éditeur:
Elsevier BV
DOI:
10.1016/j.antiviral.2022.105429
Auteurs:
Anna Czarna, Jacek Plewska, Leanid Kresik, Alex Matsuda, Abdulkarim Karim, Colin Robinson, Sean O'Byrne, Fraser Cunningham, Irene Georgiou, Piotr Wilk, Magdalena PAchota, Grzegorz Popowicz, Paul Graham Wyatt, Grzegorz Dublin, Krzystof Pyrc.
Publié dans:
Structure, Numéro 09692126, 2022, Page(s) 1050-1054, ISSN 0969-2126
Éditeur:
Cell Press
DOI:
10.1016/j.str.2022.04.014
Auteurs:
Ian R. McCracken, Gaye Saginc, Liqun He, Alik Huseynov, Alison Daniels, Sarah Fletcher, Claire Peghaire, Viktoria Kalna, Maarja Andaloussi-Mäe, Lars Muhl, Nicky M. Craig, Samantha J. Griffiths, Jürgen G. Haas, Christine Tait-Burkard, Urban Lendahl, Graeme M. Birdsey, Christer Betsholtz, Michela Noseda, Andrew H. Baker, Anna M. Randi
Publié dans:
Circulation, Numéro 143/8, 2021, Page(s) 865-868, ISSN 0009-7322
Éditeur:
Lippincott Williams & Wilkins Ltd.
DOI:
10.1161/circulationaha.120.052824
Auteurs:
Teodora Lalova-Spinks, Janos Meszaros, Isabelle Huys
Publié dans:
Frontiers in Medicine, 2023, ISSN 2296-858X
Éditeur:
Lausanne Frontiers Media
DOI:
10.3389/fmed.2023.1141685
Auteurs:
Dorothée Bardiot, Laura Vangeel, Mohamed Koukni, Philippe Arzel, Marleen Zwaagstra, Heyrhyoung Lyoo, Patrick Wanninge,n Shamshad Ahmad, Linlin Zhang, Xinyuanyuan Sun, Adrien Delpal, Cecilia Eydoux, Jean-Claude Guillemot, Eveline Lescrinier, Hugo Klaassen, Pieter Leyssen, Dirk Jochmans, Karolien Castermans, Rolf Hilgenfeld, Colin Robinso,n Etienne Decroly, Bruno Canard, Eric Snijder, Martijn Hemer
Publié dans:
Molecules, Numéro 27/3, 2022, Page(s) 1052, ISSN 1420-3049
Éditeur:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/molecules27031052
Auteurs:
Panagiotis I. Koukos, Manon Réau, Alexandre M. J. J. Bonvin
Publié dans:
Journal of Chemical Information and Modeling, Numéro 61/9, 2021, Page(s) 4807-4818, ISSN 1549-9596
Éditeur:
American Chemical Society
DOI:
10.1021/acs.jcim.1c00796
Auteurs:
Jordi Doijen, Inha Heo, Koen Temmerman, Peter Vermeulen, Annick Diels, Steffen Jaensch, Mark Burcin, Nick Van den Broeck, Valerie Raeymaekers, Joren Peremans, Katrien Konings, Maxime Clement, Danielle Peeters, Marnix Van Loock, Anil Koul, Christophe Buyck, Michiel Van Gool, Ellen Van Damme
Publié dans:
Antiviral Research, 2023, ISSN 0166-3542
Éditeur:
Elsevier BV
DOI:
10.1016/j.antiviral.2023.105789
Auteurs:
Pauline Maisonnasse, Jérémie Guedj, Vanessa Contreras, Sylvie Behillil, Caroline Solas, Romain Marlin, Thibaut Naninck, Andres Pizzorno, Julien Lemaitre, Antonio Gonçalves, Nidhal Kahlaoui, Olivier Terrier, Raphael Ho Tsong Fang, Vincent Enouf, Nathalie Dereuddre-Bosquet, Angela Brisebarre, Franck Touret, Catherine Chapon, Bruno Hoen, Bruno Lina, Manuel Rosa Calatrava, Sylvie van der Werf, Xavi
Publié dans:
Nature, Numéro 585/7826, 2020, Page(s) 584-587, ISSN 0028-0836
Éditeur:
Nature Publishing Group
DOI:
10.1038/s41586-020-2558-4
Auteurs:
Z Claessens, G Beirne, C Decouttere, N Vandaele, I Huys, L Barbier
Publié dans:
Value in Health, 2022
Éditeur:
Elsevier
DOI:
10.1016/j.jval.2022.09.1333
Auteurs:
C. Verbeke, J. Cuppens, I. Huys, L. Barbier, R. Janssens
Publié dans:
Value in Health, 2023
Éditeur:
Elsevier
DOI:
10.1016/j.jval.2023.09.1456
Auteurs:
Ieva Drulyte, Stefan Koester, Dianna Lundberg, Kurt Eng, Andrey Malyutin, Aaron McGrath, Chunyan Wang, Frank van Kuppeveld, Berend-Jan Bosch, Mazdak Radjainia, Jerry Thomas, Maureen Magnay and Daniel Hurdiss
Publié dans:
2022
Éditeur:
ThermoFischer
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